G404687


Basic Information

Item Value
gene id G404687
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12589272 ~ 12591533 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU480131
TGCAATATTCTCATGTTCAACTCAGAAAAGATTACAataaagaccacacacacacacaaatccattCCAGACATCAGGCGTTGTTCAGTCAACATGGAAGACACTAAACAGAGTATCTGACATTAGTATAAACTTCTGTAACAATCAAATTACAATCAAAGTACCTTCACTAACACTTCATGCAAATTCCACCTTAAGGCTGATATCATAttctaataacacacacacaatgctttgTGATAGTAAATCAGCCTAAATAAGCACACTTAATTAAAGATATACTACAAACTatgggtaacactttattttaggATGGGATAAATCTTTTACAAAGCAATACTAGAGGATTTAGGTCAAAACCTGTAAGATAAAAAGTTTTTGTGAAACATATTGCTTTGTCTTtacatgaaagagaaaagaggccTCAGTTGTCATTATGGGTTGACTGTGAAATCTGTACTTTTTATCTTGGAAATTATTCTGTTGTCTTATTTAGTGTCCACCtttcatctgtccttttgttaggagtatgtactgtatctacTTCTTACAGGAGCATGGAATCGAATGCTGTTCAAGTGAAGTGTTTCATGTGTGGTTCAATTTGTTTTGAAAACTATTATAAAGAATCATTCCAACacaactttacatttttatgacaACCTTGtcaaaaaatgaatgattttaatgctCTGTAGAACATCTACACCTTTTTCAATGTTCCATTagtaaaaacaataatgtgctataataggataaaaaaaattacagcaacaAGTGTTGTGTCTACACATAATAATTAAAGATGAGGAAATGTtagtctctcttctctcttataTGTAAAGACAGAGTCACACGAAACCTCTGTAAGCTCACGAGTTTTGACATAAGCCTTTCATAAGCTCCCCACCCAGCactgctttataaaatatttatgcatagCTTATGGATGTGTTAAAGACCCTATGTAGGTacccttcaaataaagtgttagcaaaatatgtattaaatattgaaGCCAAGTTTTAAATAGAAGTTGTGATCTATGGACAACAGCACCTTAACCTCTGGCACCAGCCATGTGATGGAGAGATTAACATGAGTGTAATATTTACTTTCATGCCCTTTAAGCAATCACCTATTATTTAATATCCGCAAGAGCACCAAAATCCAGTCAAACAGAATATAAAAGTCGATATTAGAGGTCAAATACAACCGTTTTTGTTCGCAGCTTGTATTGTAATACAGCGGGATTAATACACAAAGGAACTTATAAGCATTGTTACATGAATGCAACATCACAATGTAAAACCATTCTATCCAGCACTTCGTCACTGTTTTGTGTTAATGCTATCCATTAGATTCTGGAAAGTTCAGTTCATTGAATAGTGAACCATTATGAGCACCAGAGGAAATTTCCTTCACAGCAGCTAGTTGTGGAATAAACCTGAAATGTGGGTTAGCAACCTACAAGTGAAAGTCCTGGTTTATGTGCATTGTGTGCAAGTATCAAACTCGCTGTGAAGCTCAGCTTATCCCCAAATACTTTTTCCAAGGTACCCAAGTGGGGAAAGGTAGCTAAAGTGGACGCACATATCCAGTACTGAGAAAACGATCCCAaaggaatgaaaaatgaaatgagaatGTCAGAGTTTTAAAAACAGTCTCTAAGATGAACTACGTTTGTATAGGATCACTTTGTGCCAGTGTTTGACTTGAAACCGTTTGGTAAAGAACAGCAAGTAAGGACGCCTAGTAGATACCATACTTAAGGACTGAGTGTCATGCTCCCTGATTTAtctactgctgtgtttgtgtaactatacaaagaaaagaatattttaaaaaagcaaccaAACAATATAACAACCTTTCAAAACCAAAGtaaacatgtatataaaaagcaaagtaacaaaaatacaaGTAACGGTCATTACTGGAACCATAAATTAAGCTACAGTCATAACTACAGCTCCTTCGTCCATCCGTCATCCCTACTTTCTGTTGTacagagagaagaaagtgaGGATAGAAGGGAGGAGGACAAGCACCAGATTAAGCAGAGCATGAATCTATATTAGTGTCTATAGAGAGTTTGGGGGGAGGCGCTTTGCAcctcatttccttttctttctaccTCATTCTCTGCCATATTCCAtatctctctcattttttttttcaaagaatgtTCACTTTTTCTTACGCTCCTGTGAACATCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480131 True 2220 lncRNA 0.35 2 12589272 12591533

Neighbor

gene id symbol gene type direction distance location
styk1a LOC108273367 coding downstream 107130 12465737 ~ 12482142 (-)
zgc:194578 LOC108273361 coding downstream 126916 12447738 ~ 12462356 (-)
si:ch211-232m10.6 LOC108272566,LOC108439912,LOC101076817 coding downstream 148925 12434972 ~ 12440347 (-)
ccdc106b cc106,LOC108273335 coding downstream 161883 12420503 ~ 12427389 (-)
u2af2b u2af2,u2af2b,LOC103026862,LOC107656609,LOC108439900 coding downstream 174480 12399540 ~ 12414792 (-)
si:ch211-288g17.3 LOC108273223 coding upstream 45317 12636850 ~ 12649319 (-)
kmt2ba LOC108272954,LOC107701550 coding upstream 96229 12687762 ~ 12724515 (-)
ndufv1 ndufv1,LOC108437925,LOC103023083,LOC107693353,LOC107589403,LOC107101109 coding upstream 170179 12761712 ~ 12770681 (-)
hcn3 hcn3,LOC108437924,LOC107739502,LOC102783101,LOC103358769,LOC102202422 coding upstream 180388 12771921 ~ 12783866 (-)
si:ch211-81a5.8 NA coding upstream 199263 12790796 ~ 12793315 (-)
G404682 NA non-coding downstream 10466 12576532 ~ 12578806 (-)
G404681 NA non-coding downstream 11988 12575080 ~ 12577284 (-)
G404667 NA non-coding downstream 74062 12514471 ~ 12515210 (-)
G404421 NA non-coding downstream 313770 12275268 ~ 12275502 (-)
G404282 NA non-coding downstream 463432 12125457 ~ 12125840 (-)
G404692 NA non-coding upstream 10099 12601632 ~ 12635213 (-)
LOC113535190 NA non-coding upstream 71478 12663011 ~ 12677646 (-)
G404719 NA non-coding upstream 94657 12686190 ~ 12686468 (-)
G404799 NA non-coding upstream 226051 12817584 ~ 12942105 (-)
G404818 NA non-coding upstream 322408 12913941 ~ 12923945 (-)
trnav-cac_26 NA other downstream 9621 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 10471 12578729 ~ 12578801 (-)
trnav-cac_25 NA other downstream 11612 12577588 ~ 12577660 (-)
trnav-aac_25 NA other downstream 12468 12576732 ~ 12576804 (-)
trnav-aac_24 NA other downstream 14457 12574740 ~ 12574815 (-)
G404999 NA other upstream 549161 13140694 ~ 13141115 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other upstream 798383 13389916 ~ 13392833 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other upstream 950470 13542003 ~ 13544505 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 964623 13556156 ~ 13558631 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 1168228 13759761 ~ 13761557 (-)

Expression


Co-expression Network