G404719


Basic Information

Item Value
gene id G404719
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12686190 ~ 12686468 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU480163
CTGTTATGCATTAGTGTTCTCTATTTGTGTCCTGTGAATCAGTGTGTTCCTCAGGCAGCCACTTAAGTGGGACAACTTTCCACAAGCCACAATGAACAGTGAAGGCTGTCAAGATCAGGATGTGAACAGAGAAGGCTGTGAAGGTGGCGTTTAGTATTTCCATTAATGATCCTTTGACGGATTAAGATGAAGCATATGTGTGGTTAACTCTGGGATACTGCTTGGGCTGTTTTTACTCGGGATAAATATGGCATTAATTTTTGCAGTAGAGAATTTCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480163 True 279 lncRNA 0.42 1 12686190 12686468

Neighbor

gene id symbol gene type direction distance location
si:ch211-288g17.3 LOC108273223 coding downstream 36871 12636850 ~ 12649319 (-)
styk1a LOC108273367 coding downstream 204048 12465737 ~ 12482142 (-)
zgc:194578 LOC108273361 coding downstream 223834 12447738 ~ 12462356 (-)
si:ch211-232m10.6 LOC108272566,LOC108439912,LOC101076817 coding downstream 245843 12434972 ~ 12440347 (-)
ccdc106b cc106,LOC108273335 coding downstream 258801 12420503 ~ 12427389 (-)
kmt2ba LOC108272954,LOC107701550 coding upstream 1294 12687762 ~ 12724515 (-)
ndufv1 ndufv1,LOC108437925,LOC103023083,LOC107693353,LOC107589403,LOC107101109 coding upstream 75244 12761712 ~ 12770681 (-)
hcn3 hcn3,LOC108437924,LOC107739502,LOC102783101,LOC103358769,LOC102202422 coding upstream 85453 12771921 ~ 12783866 (-)
si:ch211-81a5.8 NA coding upstream 104328 12790796 ~ 12793315 (-)
clk2a clk2,LOC108437923,LOC107724099,LOC107599513,LOC107656479,LOC107589405 coding upstream 109263 12795731 ~ 12813429 (-)
LOC113535190 NA non-coding downstream 8544 12663011 ~ 12677646 (-)
G404692 NA non-coding downstream 50977 12601632 ~ 12635213 (-)
G404687 NA non-coding downstream 94657 12589272 ~ 12591533 (-)
G404682 NA non-coding downstream 107384 12576532 ~ 12578806 (-)
G404681 NA non-coding downstream 108906 12575080 ~ 12577284 (-)
G404799 NA non-coding upstream 131116 12817584 ~ 12942105 (-)
G404818 NA non-coding upstream 227473 12913941 ~ 12923945 (-)
G404896 rprd2 non-coding upstream 297245 12983713 ~ 12984373 (-)
G404900 NA non-coding upstream 305733 12992201 ~ 12993258 (-)
G404904 NA non-coding upstream 312775 12999243 ~ 13002077 (-)
trnav-cac_26 NA other downstream 106539 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 107389 12578729 ~ 12578801 (-)
trnav-cac_25 NA other downstream 108530 12577588 ~ 12577660 (-)
trnav-aac_25 NA other downstream 109386 12576732 ~ 12576804 (-)
trnav-aac_24 NA other downstream 111375 12574740 ~ 12574815 (-)
G404999 NA other upstream 454226 13140694 ~ 13141115 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other upstream 703448 13389916 ~ 13392833 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other upstream 855535 13542003 ~ 13544505 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 869688 13556156 ~ 13558631 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 1073293 13759761 ~ 13761557 (-)

Expression


Co-expression Network