G404799


Basic Information

Item Value
gene id G404799
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12817584 ~ 12942105 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU480264
AGTAACTTTATAAAATAAGTTCaacatttggattttttttttatactgttctTTGTTTGGTCTTTCACATCTACAAACCATTTAACTAAGCagttagtgtttgtgttacttGTTTGTAATAATTATAGTACTCAAGTAAACTTTATGACCTTCCTGCAGTGGATGTGGTAGATGGGCCTGGGAGAGAAGGAGTTAAGCATTCAAAGACAGCATTTTTGGAGGCTTAATATTATGCTTGGTTGACAGGTGTTTTGCTAAAAACATCTTCAGAAGCAAAGGTTTTATTGCACAGTGAGTGGTCTTATATCTACTTGACAAAAGGTATGAAAAGCCTCCTGTTCTGCTCCTTGCTGCACTGTCTCTGGATCAGTCTGGAGCTAAAAGTGCTTCACTGTTTGACTCATGGAGGAGGTGAGAGACATTGTCCGTCATGAGCAACAGTTTAGCCAGTTTAGCATCCTCTCTTAAACAGTCAATTCCAAGGAGTCCAGGTTGGTCCCAAGGACCTCTGTAGTCTTCCTAATTAGTTTCCTGCCTTCATGCCACTGTGTATCATCTTGCTACATATATTAAAGGACCAGAGCTTCCTCAAAATGTAGTTGTTTTTCCTCTGTCCTTTACTGTATACTGTCTTCTCCACAGTGTCTCCCAGGAGATAGGGGTCAGTGGGGTCTTAGTATTCCTAAAGTCCATCACCATCTCCTTTGTCTTGTCCACATTGTGCTTTATGTCGTTTATTCCACAGTACTCAATgaagctgtcaatcacagccCTATATTCTGACTTCTTCTCAGCACTGACGCTCCACTACGGCAGTGTGATCAGATGGCACCAATCCAAATTGTGCTTGAaatctgaaaaagaaaggagaCAGAACTGTCCCCTGTGGAGTGCCTTCGCACGCTCACTGCCTGGTCCGAGACACAGTTCTGCAAACGCGTCTGGTTGTCATATAGTCAGTGATTAAGGGGAATGTGGTAGTGTCCTCCAGCATCTCCCTTAGATTCTTGCCAAGTAAAGAGGGCTGTTCGGTGTTAAAAGCACAGGAgggctcccaagtggtgcaaGAGAAAAGCGTACGCCTTATCGCTGGGAGAtcacgagtttgaatcccgatgatgccGTAGCCATCTGCAAAACTGGCCCTGCTCTCAGGGTTGGAGgttctctcttccctgtcagtcacagcaacactagaCAATCATGGGCGTCATGCATGCAGAATAGGGCAGAGTGCGCTGTGCTGCCAGTTCTAAAGGATGCAGACGTTGGTTTGACATGACTCAGAGAAAACACAGGCTTGCCCCACCCTCCCTGGTTGATCATGGTTGATCACACACCCTCATGTGATAAGACTTAGCTGGTGGGTGGGATTTAGCAAGACCAAATTAGCGGAGAAAATAGGGGAACACTGGAGAATCAAAATATGTGACACTCACAGGGGCCTCTGCAGAAGACAACAAGGTTTAAAGCTGTGTTCCCAGTTAATAAAAGGTGTCCTAGGTGGTGACAAAATGAATGTAAAGTATTTTAGCATGGAGTTGGACCTCCAAGACGTGCCAGAATAGATGAAGTGTGCCTtgacatacagtggatataaaaagtctacacacccctgttaaaatgccaggcttctgtgaccacattattttgtttttttatgtttactcGCCCCctctaaaagatttcagtttgtttttcggatgagttgtacaggttataggtcacattaaaggtggaaaaagttctgaaatgatttatctttcttttaaacctggcattttaacaggggtgtgtagagtttttatatccactgtagattCTACatgtctctggaactgtactgagccatgccagcaaaatgtccTGACTTCATGGGCACACGTTGCAATCAGAAGGTAATCAGCTCAGTGAGGCCAGATCCAGAAGATACACGTATCCATCAGATCCATCTGAGGCAGatgtaaacacaatctgtacaCTGTACTTTGTTCAGCCTGGCTTTATGGAGAAAATTCCTGCTGACAAGATACAGGGAGTcggaaaagtcaggaaccaatgggaatatGCTGAGCAAATATGTCCATTCGaaatgttgagcaaaatccgcaaaaaaaaaatgatacactGGCTGAGAAAATGCGTAAAATGATACGCTGAGAAAATGCGTAGAGCATAAGGGTGACCATGTAGCACATAcgcagtaaataataaatacaaaattaagtgtatgtagttttactctcattggttcctgactttttggacaccttgtattatgtttttttttttgttgttttttttttttaaat
>TU480265
tttttttttgttgttttttttttttttaaatctgcaaaACGTTAAACATCACTGTTTCATCATCCCTAGTGTCAAGGATCGATATAGTAACATCTTGTTCCTGCAGACACAGTGGATATTTAATTGTTTCCTAACAGACAGCTGTTGAAGATGACCCTTTCCTCTGCACAGACGAGAACTTGTTTGATTTGATAaagttttgtttgattttgataCGAAGTAGAGGATCACAATTCTCAACAATAGTATATCTTAGATTAATCTGGATTTGGGGGTGTGAGTTGCAGTTTCGGACCGTAAATGAAGATCTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480264 True 2312 lncRNA 0.42 2 12817584 12877390
TU480265 False 313 lncRNA 0.35 2 12874811 12942105

Neighbor

gene id symbol gene type direction distance location
clk2a clk2,LOC108437923,LOC107724099,LOC107599513,LOC107656479,LOC107589405 coding downstream 4155 12795731 ~ 12813429 (-)
si:ch211-81a5.8 NA coding downstream 24269 12790796 ~ 12793315 (-)
hcn3 hcn3,LOC108437924,LOC107739502,LOC102783101,LOC103358769,LOC102202422 coding downstream 33718 12771921 ~ 12783866 (-)
ndufv1 ndufv1,LOC108437925,LOC103023083,LOC107693353,LOC107589403,LOC107101109 coding downstream 46903 12761712 ~ 12770681 (-)
kmt2ba LOC108272954,LOC107701550 coding downstream 93069 12687762 ~ 12724515 (-)
LOC117596411 LOC101068103,LOC105418166,LOC108412963,LOC106522608,LOC105419408,LOC108431938,LOC106674638,LOC108415995 coding upstream 145382 13087487 ~ 13091746 (-)
trim46b LOC108272350,LOC108437912,LOC107589413,LOC107693334,LOC107750805 coding upstream 466952 13409057 ~ 13443086 (-)
chrna11 si:ch211-39a7.1,LOC108273254,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611 coding upstream 547844 13489949 ~ 13526100 (-)
LOC113535306 NA coding upstream 606312 13548417 ~ 13549215 (-)
aqp10b LOC108272648,LOC108433769,LOC107599561 coding upstream 633579 13575684 ~ 13586550 (-)
G404719 NA non-coding downstream 131116 12686190 ~ 12686468 (-)
LOC113535190 NA non-coding downstream 139938 12663011 ~ 12677646 (-)
G404692 NA non-coding downstream 182371 12601632 ~ 12635213 (-)
G404687 NA non-coding downstream 226051 12589272 ~ 12591533 (-)
G404682 NA non-coding downstream 238778 12576532 ~ 12578806 (-)
G404896 rprd2 non-coding upstream 41608 12983713 ~ 12984373 (-)
G404900 NA non-coding upstream 50096 12992201 ~ 12993258 (-)
G404904 NA non-coding upstream 57138 12999243 ~ 13002077 (-)
G404916 NA non-coding upstream 76488 13018593 ~ 13021304 (-)
G404899 NA non-coding upstream 80639 13022744 ~ 13025118 (-)
trnav-cac_26 NA other downstream 237933 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 238783 12578729 ~ 12578801 (-)
trnav-cac_25 NA other downstream 239924 12577588 ~ 12577660 (-)
trnav-aac_25 NA other downstream 240780 12576732 ~ 12576804 (-)
trnav-aac_24 NA other downstream 242769 12574740 ~ 12574815 (-)
G404999 NA other upstream 198589 13140694 ~ 13141115 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other upstream 447811 13389916 ~ 13392833 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other upstream 599898 13542003 ~ 13544505 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 614051 13556156 ~ 13558631 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 817656 13759761 ~ 13761557 (-)

Expression


Co-expression Network