G404999


Basic Information

Item Value
gene id G404999
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13140694 ~ 13141115 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU480489
TTCGATCCTGCTTTGCTGCTTCCCAGAAGTTACTCAATATGAGGTCGAAGACACCATCAGGGGGATGAGATCCTCCACATGTGCCCTCGACCCTTTTCCTACACCTCTGTTGAAAGCAAATATTTCTGCCATCAGTCCCCTTATCACCATGATAATAAACCAATCCCTTCAGACTGGCCATGTACCGTCTGCCTTGAAAACGGCCATAATCAGACCATTACTTAAGAAACCCTCAATTGATCCTCAAATCTTTGCTAACTATAGGCCCATATCCAACCTGCCATTTCTCTCTAAGGTTCTGGAGAAAGTAGTTGCCAGCCACCTTCAAGACCACCtcaaacacaataacatttttgaaaagtttCAGTCTGGTTTCCGTTCCGCTCACAGCACGGAAACAGCCTTAGTGAGAGTCACAAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480489 True 422 TUCP 0.45 1 13140694 13141115

Neighbor

gene id symbol gene type direction distance location
LOC117596411 LOC101068103,LOC105418166,LOC108412963,LOC106522608,LOC105419408,LOC108431938,LOC106674638,LOC108415995 coding downstream 48948 13087487 ~ 13091746 (-)
crabp2b crabp2,crabp2b,LOC107656471 coding downstream 194317 12937224 ~ 12946377 (-)
scamp3 scamp3,LOC106588184 coding downstream 214430 12915978 ~ 12926264 (-)
ash1l LOC108272684,LOC108437921,LOC106588182 coding downstream 240734 12860573 ~ 12899960 (-)
lrrc71 lrrc71 coding downstream 285202 12838204 ~ 12855492 (-)
trim46b LOC108272350,LOC108437912,LOC107589413,LOC107693334,LOC107750805 coding upstream 267942 13409057 ~ 13443086 (-)
chrna11 si:ch211-39a7.1,LOC108273254,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611 coding upstream 348834 13489949 ~ 13526100 (-)
LOC113535306 NA coding upstream 407302 13548417 ~ 13549215 (-)
aqp10b LOC108272648,LOC108433769,LOC107599561 coding upstream 434569 13575684 ~ 13586550 (-)
hax1 hax1 coding upstream 449924 13591039 ~ 13599620 (-)
G404997 NA non-coding downstream 39 13140420 ~ 13140655 (-)
G404982 NA non-coding downstream 13038 13127399 ~ 13127656 (-)
G404959 NA non-coding downstream 28053 13112433 ~ 13112641 (-)
G404956 NA non-coding downstream 33737 13106733 ~ 13106957 (-)
G404943 NA non-coding downstream 53495 13086961 ~ 13087199 (-)
G405032 NA non-coding upstream 77164 13218279 ~ 13218480 (-)
G405144 NA non-coding upstream 225322 13366437 ~ 13366776 (-)
G405206 LOC108273195,LOC108437913,LOC103394518,LOC103356295 non-coding upstream 311284 13452399 ~ 13454797 (-)
LOC113535067 NA non-coding upstream 418774 13559889 ~ 13563949 (-)
G405353 NA non-coding upstream 459912 13601027 ~ 13605892 (-)
trnav-cac_26 NA other downstream 561043 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 561893 12578729 ~ 12578801 (-)
trnav-cac_25 NA other downstream 563034 12577588 ~ 12577660 (-)
trnav-aac_25 NA other downstream 563890 12576732 ~ 12576804 (-)
trnav-aac_24 NA other downstream 565879 12574740 ~ 12574815 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other upstream 248801 13389916 ~ 13392833 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other upstream 400888 13542003 ~ 13544505 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 415041 13556156 ~ 13558631 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 618646 13759761 ~ 13761557 (-)
npy npy other upstream 940257 14081372 ~ 14083846 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_04352938_04393125 CNNM4B, CNNM4 coding CI01000071 null 4352058 ~ 4393125 (-)