dpm3 (dpm3,LOC107693280,LOC107678800)


Basic Information

Item Value
gene id dpm3
gene name dpm3,LOC107693280,LOC107678800
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13389916 ~ 13392833 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU480639
TGCGCGCACATTACAAGTGGTGAGCTGGCTTAGAGTTCTCCAATTTTCTTCATCATGACCAAACTTCTGGAGTGGCTTCTGGGTGTGTCGCTGGTTGCTGTTGCCTGGGGActtgtgacctttgaccttctTGGCTTGCAGTTGCCCGCTGTGTACAAGGAGGTGGCTTGGCCCATGCCTGTGTACCTGCTGGTGGTGTTTGGGTGTTATTCTCTGGCAACAGTCGGTTACAGAGTAGCCACGTTTAACGACTGCGAAGATGCAGCCAGAGAGCTGAAGGCGCAGATACAAGAGGCTAAAGAGGACTTAAAGAAGAAGGGCCTGAAGATGTGAGGACTTTGTTGGAAATGGTGGACGTTGCTGGACTGTAATAGACCCCCTTTCTGACTCAGCTATGCTCtttttttgtgtctctgtgaCTTTCTCCTGTTTGTTATACATTTCTGACTTGAGACACTGAGAGATCACTATGGAACCGGGAACCATCCTAAAATGTCAGTACCTGAAATCAGATGTAGATGTTCTTTTGAATTTTTCTTCAAATGCAGTGCACATCATTATAGCAGTccatataaaattatataaacaaatgtCTAGAATGGAAATGTAGAATGTGCTGAACTGGCTTCTCCAAATGGAGACGtctctgtgatttattattattttttttatgtatttttggtGTCCCAGAAGTCAGAAGAATCAGAATTTGGAGTCAGACTAACTAACAACGTGGTTGCACAGCGTCATGCTTGTGTGAGATGACTGTGGCGTACGCTCGGCCCTAGCAGCACTCGATACAGGGTTGATTTTTAACAAGCTTGATAATAGGATACTATTGTTctagaaatacacacactgggGCACAGGAATGTCTGCAGCAGAAAAAAGTCAGCGCCATGTTACTGTTTTAAGTTACTGCAGCTGATTGTGTAATCCATATACATGAACTAGTGCCTGTATTCACAAAGCATCTTAACATGGGAGGGAGTGCTGATTTCAGATCCTGTGTTTTACTACATGGGGAAGGGAACCTGGTCCGGTCACTAAAAGGTTTTATGAATATTACCTCTtgcatgggtttttttttttgggttgttgCTTTCTGTTGGAAACTGTTAGAAGAGTCTCCTAATTTCCctaatggctgtttttttttgtcactgtatTGAATGGGTAAAATCTGAGTGGAAAACTAGACTGCATTCCATATGTAACTACA
>XM_026927904.2
TTGggagtaatagtagtagtaggagtagttgTAGTGTCGCGTGTCTGAAATGCACTACGACTCCCAGCAGCCTTCGCGAGTTATTGACGTCATAACTCTGCGCGCACATTACAAGTGGTGAGCTGGCTTAGAGTTCTCCAATTTTCTTCATCATGACCAAACTTCTGGAGTGGCTTCTGGGTGTGTCGCTGGTTGCTGTTGCCTGGGGActtgtgacctttgaccttctTGGCTTGCAGTTGCCCGCTGTGTACAAGGAGGTGGCTTGGCCCATGCCTGTGTACCTGCTGGTGGTGTTTGGGTGTTATTCTCTGGCAACAGTCGGTTACAGAGTAGCCACGTTTAACGACTGCGAAGATGCAGCCAGAGAGCTGAAGGCGCAGATACAAGAGGCTAAAGAGGACTTAAAGAAGAAGGGCCTGAAGATGTGAGGACTTTGTTGGAAATGGTGGACGTTGCTGGACTGTAATAGACCCCCTTTCTGACTCAGCTATGCTCtttttttgtgtctctgtgaCTTTCTCCTGTTTGTTATACATTTCTGACTTGAGACACTGAGAGATCACTATGGAACCGGGAACCATCCTAAAATGTCAGTACCTGAAATCAGATGTAGATGTTCTTTTGAATTTTTCTTCAAATGCAGTGCACATCATTATAGCAGTccatataaaattatataaacaaatgtCTAGAATGGAAATGTAGAATGTGCTGAACTGGCTTCTCCAAATGGAGACGtctctgtgatttattattattttttttatgtatttttggtGTCCCAGAAGTCAGAAGAATCAGAATTTGGAGTCAGACTAACTAACAACGTGGTTGCACAGCGTCATGCTTGTGTGAGATGACTGTGGCGTACGCTCGGCCCTAGCAGCACTCGATACAGGGTTGATTTTTAACAAGCTTGATAATAGGATACTATTGTTctagaaatacacacactgggGCACAGGAATGTCTGCAGCAGAAAAAAGTCAGCGCCATGTTACTGTTTTAAGTTACTGCAGCTGATTGTGTAATCCATATACATGAACTAGTGCCTGTATTCACAAAGCATCTTAACATGGGAGGGAGTGCTGATTTCAGATCCTGTGTTTTACTACATGGGGAAGGGAACCTGGTCCGGTCACTAAAAGGTTTTATGAATATTACCTCTtgcatgggtttttttttttgggttgttgCTTTCTGTTGGAAACTGTTAGAAGAGTCTCCTAATTTCCctaatggctgtttttttttgtcactgtatTGAATGGGTAAAATCTGAGTGGAAAACTAGACTGCATTCCATATGTAACTACACTGTGTTCTAAATTTAGTCCAAATGTTTAATACAGATTATTTACGATG

Function

symbol description
dpm3 Acts upstream of or within muscle structure development. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of dolichol-phosphate-mannose synthase complex. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in brain; cloaca; pronephric duct; solid lens vesicle; and vertical myoseptum. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation and muscular dystrophy-dystroglycanopathy. Orthologous to human DPM3 (dolichyl-phosphate mannosyltransferase subunit 3, regulatory).

NR:

description
dolichol-phosphate mannosyltransferase subunit 3

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K09659 DPM3; dolichol-phosphate mannosyltransferase subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU480639 False 1222 TUCP 0.43 2 13389964 13392735
XM_026927904.2 True 1368 mRNA 0.42 2 13389916 13392833

Neighbor

gene id symbol gene type direction distance location
LOC117596411 LOC101068103,LOC105418166,LOC108412963,LOC106522608,LOC105419408,LOC108431938,LOC106674638,LOC108415995 coding downstream 298170 13087487 ~ 13091746 (-)
crabp2b crabp2,crabp2b,LOC107656471 coding downstream 443539 12937224 ~ 12946377 (-)
scamp3 scamp3,LOC106588184 coding downstream 463652 12915978 ~ 12926264 (-)
ash1l LOC108272684,LOC108437921,LOC106588182 coding downstream 489956 12860573 ~ 12899960 (-)
lrrc71 lrrc71 coding downstream 534424 12838204 ~ 12855492 (-)
trim46b LOC108272350,LOC108437912,LOC107589413,LOC107693334,LOC107750805 coding upstream 16224 13409057 ~ 13443086 (-)
chrna11 si:ch211-39a7.1,LOC108273254,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611 coding upstream 97116 13489949 ~ 13526100 (-)
LOC113535306 NA coding upstream 155584 13548417 ~ 13549215 (-)
aqp10b LOC108272648,LOC108433769,LOC107599561 coding upstream 182851 13575684 ~ 13586550 (-)
hax1 hax1 coding upstream 198206 13591039 ~ 13599620 (-)
G405144 NA non-coding downstream 23140 13366437 ~ 13366776 (-)
G405032 NA non-coding downstream 171436 13218279 ~ 13218480 (-)
G404997 NA non-coding downstream 249261 13140420 ~ 13140655 (-)
G404982 NA non-coding downstream 262260 13127399 ~ 13127656 (-)
G404959 NA non-coding downstream 277275 13112433 ~ 13112641 (-)
G405206 LOC108273195,LOC108437913,LOC103394518,LOC103356295 non-coding upstream 59566 13452399 ~ 13454797 (-)
LOC113535067 NA non-coding upstream 167056 13559889 ~ 13563949 (-)
G405353 NA non-coding upstream 208194 13601027 ~ 13605892 (-)
G405368 NA non-coding upstream 262572 13655405 ~ 13706542 (-)
G405386 NA non-coding upstream 342703 13735536 ~ 13735748 (-)
G404999 NA other downstream 248801 13140694 ~ 13141115 (-)
trnav-cac_26 NA other downstream 810265 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 811115 12578729 ~ 12578801 (-)
trnav-cac_25 NA other downstream 812256 12577588 ~ 12577660 (-)
trnav-aac_25 NA other downstream 813112 12576732 ~ 12576804 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other upstream 149170 13542003 ~ 13544505 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 163323 13556156 ~ 13558631 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 366928 13759761 ~ 13761557 (-)
npy npy other upstream 688539 14081372 ~ 14083846 (-)
G405588 NA other upstream 721786 14114619 ~ 14119658 (-)

Expression


Co-expression Network