G405144


Basic Information

Item Value
gene id G405144
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13366437 ~ 13366776 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU480641
ggctgcttctggaacagactcactcatctttactgatgatggaactcatgatggtagcagcagaatgaattcagagtctacagaaacattctcactgccaatttacagagaaattcaTCCAAACTAATTGggaagaacttcatcatgcagctagacaatgacccaaaacacactgccaacacaacagaggacttcatcaggggaaaaagtggaagattttaaactggccaagtccatcatcagaccttaacccacctgagcagcatttcacctcctggagactgaagagagaaacccccaaaacaaacaacctcTGAAAGAAGCTACattacaagcctgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480641 True 340 lncRNA 0.44 1 13366437 13366776

Neighbor

gene id symbol gene type direction distance location
LOC117596411 LOC101068103,LOC105418166,LOC108412963,LOC106522608,LOC105419408,LOC108431938,LOC106674638,LOC108415995 coding downstream 274691 13087487 ~ 13091746 (-)
crabp2b crabp2,crabp2b,LOC107656471 coding downstream 420060 12937224 ~ 12946377 (-)
scamp3 scamp3,LOC106588184 coding downstream 440173 12915978 ~ 12926264 (-)
ash1l LOC108272684,LOC108437921,LOC106588182 coding downstream 466477 12860573 ~ 12899960 (-)
lrrc71 lrrc71 coding downstream 510945 12838204 ~ 12855492 (-)
trim46b LOC108272350,LOC108437912,LOC107589413,LOC107693334,LOC107750805 coding upstream 42281 13409057 ~ 13443086 (-)
chrna11 si:ch211-39a7.1,LOC108273254,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611 coding upstream 123173 13489949 ~ 13526100 (-)
LOC113535306 NA coding upstream 181641 13548417 ~ 13549215 (-)
aqp10b LOC108272648,LOC108433769,LOC107599561 coding upstream 208908 13575684 ~ 13586550 (-)
hax1 hax1 coding upstream 224263 13591039 ~ 13599620 (-)
G405032 NA non-coding downstream 147957 13218279 ~ 13218480 (-)
G404997 NA non-coding downstream 225782 13140420 ~ 13140655 (-)
G404982 NA non-coding downstream 238781 13127399 ~ 13127656 (-)
G404959 NA non-coding downstream 253796 13112433 ~ 13112641 (-)
G404956 NA non-coding downstream 259480 13106733 ~ 13106957 (-)
G405206 LOC108273195,LOC108437913,LOC103394518,LOC103356295 non-coding upstream 85623 13452399 ~ 13454797 (-)
LOC113535067 NA non-coding upstream 193113 13559889 ~ 13563949 (-)
G405353 NA non-coding upstream 234251 13601027 ~ 13605892 (-)
G405368 NA non-coding upstream 288629 13655405 ~ 13706542 (-)
G405386 NA non-coding upstream 368760 13735536 ~ 13735748 (-)
G404999 NA other downstream 225322 13140694 ~ 13141115 (-)
trnav-cac_26 NA other downstream 786786 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 787636 12578729 ~ 12578801 (-)
trnav-cac_25 NA other downstream 788777 12577588 ~ 12577660 (-)
trnav-aac_25 NA other downstream 789633 12576732 ~ 12576804 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other upstream 23140 13389916 ~ 13392833 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other upstream 175227 13542003 ~ 13544505 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 189380 13556156 ~ 13558631 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 392985 13759761 ~ 13761557 (-)
npy npy other upstream 714596 14081372 ~ 14083846 (-)

Expression


Co-expression Network