rps27.1 (rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547)


Basic Information

Item Value
gene id rps27.1
gene name rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13542003 ~ 13544505 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU480772
TCCTTTCCGGCAGCGGCTAACTCTTCGCCAACATGCCTCGCAAAAGACTTGCTGCACCCCACCCctgaggaggagagaaggaggcACAAGAAGAAGCGTCTCGTACAGAGCCCTAATTCCTACTTCATGGACGTCAAGTGTCCAGGATGTTCCTTCAGGAGGAAGCAGCATTAAGCTGTACACTAGATGCTCCAGTATGGAGGAAGGGAGAGGGGGGTTGGACTCGCCCTCCAAAGACCTCTCGGCTACGATCGCTGATCTTTCAACTTGAGAGAAAGGAACAGAAGCAAACACCTCCACCATCAGTTGCTTGAAAAACTAGTAAAGATGGCTCTCCAacccagtctctctctttcaataaaatgttttggctAAAATAgtgctcaggtgtgtgttctTTGAAAAACATGA
>XM_026928592.2
GGACCTTACTAAGATGTCTTCGCTTCATTTCCTCCAAAGTCCTACTTCCGGAATGCCCACGTGCTCTGTGAATAATATCGCGCCGCTTCCGCTGTGTACTTCCTTTCCGGCAGCGGCTAACTCTTCGCCAACATGCCACTCGCAAAAGACTTGCTGCACCCCACCCctgaggaggagagaaggaggcACAAGAAGAAGCGTCTCGTACAGAGCCCTAATTCCTACTTCATGGACGTCAAGTGTCCAGGATGCTATAAGATCACCACAGTCTTCAGCCATGCTCAGACagtagtgttgtgtgttggttGTTCCACTGTGCTGTGTCAACCCACTGGAGGCAAAGCACGTCTCACAGAAGGATGTTCCTTCAGGAGGAAGCAGCATTAAGCTGTACACTAGATGCTCCAGTATGGAGGAAGGGAGAGGGGGGTTGGACTCGCCCTCCAAAGACCTCTCGGCTACGATCGCTGATCTTTCAACTTGAGAGAAAGGAACAGAAGCAAACACCTCCACCATCAGTTGCTTGAAAAACTAGTAAAGATGGCTCTCCAacccagtctctctctttcaataaaatgttttggctAAAATA

Function

symbol description
rps27.2 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit assembly. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 17. Orthologous to human RPS27 (ribosomal protein S27).

NR:

description
40S ribosomal protein S27-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02978 RP-S27e, RPS27; small subunit ribosomal protein S27e

RNA

RNA id representative length rna type GC content exon number start site end site
TU480772 False 411 lncRNA 0.49 3 13542003 13544405
XM_026928592.2 True 592 mRNA 0.50 4 13542035 13544505

Neighbor

gene id symbol gene type direction distance location
chrna11 si:ch211-39a7.1,LOC108273254,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611 coding downstream 15903 13489949 ~ 13526100 (-)
trim46b LOC108272350,LOC108437912,LOC107589413,LOC107693334,LOC107750805 coding downstream 98917 13409057 ~ 13443086 (-)
LOC117596411 LOC101068103,LOC105418166,LOC108412963,LOC106522608,LOC105419408,LOC108431938,LOC106674638,LOC108415995 coding downstream 450257 13087487 ~ 13091746 (-)
crabp2b crabp2,crabp2b,LOC107656471 coding downstream 595626 12937224 ~ 12946377 (-)
scamp3 scamp3,LOC106588184 coding downstream 615739 12915978 ~ 12926264 (-)
LOC113535306 NA coding upstream 3912 13548417 ~ 13549215 (-)
aqp10b LOC108272648,LOC108433769,LOC107599561 coding upstream 31179 13575684 ~ 13586550 (-)
hax1 hax1 coding upstream 46534 13591039 ~ 13599620 (-)
ubap2l ubap2l,LOC107599491 coding upstream 58822 13603327 ~ 13638125 (-)
tuft1b LOC108272645 coding upstream 101762 13646267 ~ 13678291 (-)
G405206 LOC108273195,LOC108437913,LOC103394518,LOC103356295 non-coding downstream 87206 13452399 ~ 13454797 (-)
G405144 NA non-coding downstream 175227 13366437 ~ 13366776 (-)
G405032 NA non-coding downstream 323523 13218279 ~ 13218480 (-)
G404997 NA non-coding downstream 401348 13140420 ~ 13140655 (-)
G404982 NA non-coding downstream 414347 13127399 ~ 13127656 (-)
LOC113535067 NA non-coding upstream 15384 13559889 ~ 13563949 (-)
G405353 NA non-coding upstream 56522 13601027 ~ 13605892 (-)
G405368 NA non-coding upstream 110900 13655405 ~ 13706542 (-)
G405386 NA non-coding upstream 191031 13735536 ~ 13735748 (-)
G405419 NA non-coding upstream 263978 13808483 ~ 13814892 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other downstream 149170 13389916 ~ 13392833 (-)
G404999 NA other downstream 400888 13140694 ~ 13141115 (-)
trnav-cac_26 NA other downstream 962352 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 963202 12578729 ~ 12578801 (-)
trnav-cac_25 NA other downstream 964343 12577588 ~ 12577660 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 11651 13556156 ~ 13558631 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 215256 13759761 ~ 13761557 (-)
npy npy other upstream 536867 14081372 ~ 14083846 (-)
G405588 NA other upstream 570114 14114619 ~ 14119658 (-)
tpbga LOC108272337 other upstream 930971 14475476 ~ 14479077 (-)

Expression


Co-expression Network