cks1b (cks1b,LOC108433716,LOC107753514,LOC106570108)


Basic Information

Item Value
gene id cks1b
gene name cks1b,LOC108433716,LOC107753514,LOC106570108
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13556156 ~ 13558631 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU480779
GGCGGGGCCATGTGATCTGAGAGGGAAATTTGTCAGGAAGGCAGAGGAACGTTAGAGAAACAGCGCAGTTTATTTGATACAACTCCAGCTAAATATTAACGTTTTACTGAATATATTTGTTGGGAACAAACCAGGTGAACTAACTGCCACGCCATGTCACACAAGCAGATCTATTATTCAGACAAATACGACGACGAAAAGTTTGAGTACAGGCACGTCATGTTACCCAAGGACATAGCTAAACGTGTGCCTAAAACACACCTGATGTCGGAGACGGAGTGGCGCAACCTGGGCGTTCAGCAGAGCCAGGGCTGGGTGCACTACATGATCCAtcagccagAACCTCACATCCTGCTGTTCCGCCGTCCTCTGCCCGCGACCAAACCCCAGTGATGGAAAGCAGGCGGAGAAGGACTCGATACACACTGCAGAAGGATGACAGAGAAAGATGGAAAACAAAGTGCCGATGAAATTTGGTGTCAGTTCCTTTTGATTATAAGTGGAATATGTTCTGCTTATAAAGGTTTTCCAAAAATGTTCTTATTGTTCCACACCTCTTTgcataaaaagaaaattcagaCTGTTCTCCTTTTCACTGCATAATTTAggtgagagaatgtgtgtttagAAAATGCAGCCTGAGGAAAAGCAGTCATAAAGTATGCTTTGCATTTAAACAGCGATTGaaccttctttttctttgtgtcaTTACAGAACACTTTGCATGTTGTTTATAGTACTGTGAATGTTGGTCATCTTCCACTTATTatttatgatc
>XM_026928305.2
TGAACGCTGGGGGCGGGGCCATGTGATCTGAGAGGGAAATTTGTCAGGAAGGCAGAGGAACGTTAGAGAAACAGCGCAGTTTATTTGATACAACTCCAGCTAAATATTAACGTTTTACTGAATATATTTGTTGGGAACAAACCAGGTGAACTAACTGCCACGCCATGTCACACAAGCAGATCTATTATTCAGACAAATACGACGACGAAAAGTTTGAGTACAGGCACGTCATGTTACCCAAGGACATAGCTAAACGTGTGCCTAAAACACACCTGATGTCGGAGACGGAGTGGCGCAACCTGGGCGTTCAGCAGAGCCAGGGCTGGGTGCACTACATGATCCAtcagccagAACCTCACATCCTGCTGTTCCGCCGTCCTCTGCCCGCGACCAAACCCCAGTGATGGAAAGCAGGCGGAGAAGGACTCGATACACACTGCAGAAGGATGACAGAGAAAGATGGAAAACAAAGTGCCGATGAAATTTGGTGTCAGTTCCTTTTGATTATAAGTGGAATATGTTCTGCTTATAAAGGTTTTCCAAAAATGTTCTTATTGTTCCACACCTCTTTgcataaaaagaaaattcagaCTGTTCTCCTTTTCACTGCATAATTTAggtgagagaatgtgtgtttagAAAATGCAGCCTGAGGAAAAGCAGTCATAAAGTATGCTTTGCATTTAAACAGCGATTGaaccttctttttctttgtgtcaTTACAGAACACTTTGCATGTTGTTTATAGTACTGTGAATGTTGGTCATCTTCCACTTATTatttatga

Function

symbol description
cks1b Predicted to enable several functions, including cyclin-dependent protein serine/threonine kinase activator activity; histone binding activity; and ubiquitin binding activity. Predicted to be involved in regulation of mitotic cell cycle. Predicted to act upstream of or within cell division. Predicted to be part of SCF ubiquitin ligase complex and cyclin-dependent protein kinase holoenzyme complex. Orthologous to human CKS1B (CDC28 protein kinase regulatory subunit 1B).

NR:

description
PREDICTED: cyclin-dependent kinases regulatory subunit 1

GO:

id name namespace
GO:0045859 regulation of protein kinase activity biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K02219 CKS1; cyclin-dependent kinase regulatory subunit CKS1

RNA

RNA id representative length rna type GC content exon number start site end site
TU480779 False 778 TUCP 0.43 4 13556156 13558620
XM_026928305.2 True 787 mRNA 0.43 4 13556158 13558631

Neighbor

gene id symbol gene type direction distance location
LOC113535306 NA coding downstream 6941 13548417 ~ 13549215 (-)
chrna11 si:ch211-39a7.1,LOC108273254,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611 coding downstream 30056 13489949 ~ 13526100 (-)
trim46b LOC108272350,LOC108437912,LOC107589413,LOC107693334,LOC107750805 coding downstream 113070 13409057 ~ 13443086 (-)
LOC117596411 LOC101068103,LOC105418166,LOC108412963,LOC106522608,LOC105419408,LOC108431938,LOC106674638,LOC108415995 coding downstream 464410 13087487 ~ 13091746 (-)
crabp2b crabp2,crabp2b,LOC107656471 coding downstream 609779 12937224 ~ 12946377 (-)
aqp10b LOC108272648,LOC108433769,LOC107599561 coding upstream 17053 13575684 ~ 13586550 (-)
hax1 hax1 coding upstream 32408 13591039 ~ 13599620 (-)
ubap2l ubap2l,LOC107599491 coding upstream 44696 13603327 ~ 13638125 (-)
tuft1b LOC108272645 coding upstream 87636 13646267 ~ 13678291 (-)
cgnb LOC108272895 coding upstream 130491 13689122 ~ 13726155 (-)
G405206 LOC108273195,LOC108437913,LOC103394518,LOC103356295 non-coding downstream 101359 13452399 ~ 13454797 (-)
G405144 NA non-coding downstream 189380 13366437 ~ 13366776 (-)
G405032 NA non-coding downstream 337676 13218279 ~ 13218480 (-)
G404997 NA non-coding downstream 415501 13140420 ~ 13140655 (-)
G404982 NA non-coding downstream 428500 13127399 ~ 13127656 (-)
LOC113535067 NA non-coding upstream 1258 13559889 ~ 13563949 (-)
G405353 NA non-coding upstream 42396 13601027 ~ 13605892 (-)
G405368 NA non-coding upstream 96774 13655405 ~ 13706542 (-)
G405386 NA non-coding upstream 176905 13735536 ~ 13735748 (-)
G405419 NA non-coding upstream 249852 13808483 ~ 13814892 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 11651 13542003 ~ 13544505 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other downstream 163323 13389916 ~ 13392833 (-)
G404999 NA other downstream 415041 13140694 ~ 13141115 (-)
trnav-cac_26 NA other downstream 976505 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 977355 12578729 ~ 12578801 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 201130 13759761 ~ 13761557 (-)
npy npy other upstream 522741 14081372 ~ 14083846 (-)
G405588 NA other upstream 555988 14114619 ~ 14119658 (-)
tpbga LOC108272337 other upstream 916845 14475476 ~ 14479077 (-)
G405961 NA other upstream 1408845 14967476 ~ 15013988 (-)

Expression


Co-expression Network