G405353


Basic Information

Item Value
gene id G405353
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13601027 ~ 13605892 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU480893
gtttttttaagctGTGCTTGGAGGATTTAACACAACTGACACtgttaaaaatgcacattttgcTGTAACATTTTGTCCTCCTGACTGTGTGATCAGCTTGTTAAAGGCCATAGGGGTTTCTGTATCAAAAATGGAGCTCTAATTACACtacatgaccaaaagtatgtggacacttgactaGCACATACCTGTGGTTCTTCcccacacaattgtatagagtgtctctgtgtgctgtagcattacagtttcccttcactggaactaagaggcccaaacctgttccagcatgacaatgcccctgtgcacaaagcgagctccatgaagacatggtgtgtgaaggttggagtggaagaactcgagtgtcctgcacagagccctgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480893 True 381 lncRNA 0.45 2 13601027 13605892

Neighbor

gene id symbol gene type direction distance location
hax1 hax1 coding downstream 1407 13591039 ~ 13599620 (-)
aqp10b LOC108272648,LOC108433769,LOC107599561 coding downstream 14477 13575684 ~ 13586550 (-)
LOC113535306 NA coding downstream 51812 13548417 ~ 13549215 (-)
chrna11 si:ch211-39a7.1,LOC108273254,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611 coding downstream 74927 13489949 ~ 13526100 (-)
trim46b LOC108272350,LOC108437912,LOC107589413,LOC107693334,LOC107750805 coding downstream 157941 13409057 ~ 13443086 (-)
tuft1b LOC108272645 coding upstream 40375 13646267 ~ 13678291 (-)
cgnb LOC108272895 coding upstream 83230 13689122 ~ 13726155 (-)
pygo2 LOC108273220,LOC108433763,LOC103036475,LOC107693316,LOC107729895 coding upstream 123235 13729127 ~ 13734761 (-)
s100s s100s,LOC108272970,LOC108433762,LOC103039105,LOC107716593,LOC107670010,LOC107559723 coding upstream 140986 13746878 ~ 13750502 (-)
s100u LOC108272971,LOC108433761 coding upstream 146921 13752813 ~ 13758428 (-)
LOC113535067 NA non-coding downstream 37078 13559889 ~ 13563949 (-)
G405206 LOC108273195,LOC108437913,LOC103394518,LOC103356295 non-coding downstream 146230 13452399 ~ 13454797 (-)
G405144 NA non-coding downstream 234251 13366437 ~ 13366776 (-)
G405032 NA non-coding downstream 382547 13218279 ~ 13218480 (-)
G404997 NA non-coding downstream 460372 13140420 ~ 13140655 (-)
G405368 NA non-coding upstream 49513 13655405 ~ 13706542 (-)
G405386 NA non-coding upstream 129644 13735536 ~ 13735748 (-)
G405419 NA non-coding upstream 202591 13808483 ~ 13814892 (-)
G405420 NA non-coding upstream 210006 13815898 ~ 13872428 (-)
G405575 NA non-coding upstream 470550 14076442 ~ 14077150 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 42396 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 56522 13542003 ~ 13544505 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other downstream 208194 13389916 ~ 13392833 (-)
G404999 NA other downstream 459912 13140694 ~ 13141115 (-)
trnav-cac_26 NA other downstream 1021376 12579580 ~ 12579651 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 153869 13759761 ~ 13761557 (-)
npy npy other upstream 475480 14081372 ~ 14083846 (-)
G405588 NA other upstream 508727 14114619 ~ 14119658 (-)
tpbga LOC108272337 other upstream 869584 14475476 ~ 14479077 (-)
G405961 NA other upstream 1361584 14967476 ~ 15013988 (-)

Expression


Co-expression Network