s100a11 (s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111)


Basic Information

Item Value
gene id s100a11
gene name s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13759761 ~ 13761557 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU480964
AAAGTGGaggtgaaaatgaaatgaaacattagTTTGCTTGCTTCTGCTACCAATACAACACTCCTCAGTGTAACCTCCCATTCCGATTAGACATGGAGACTGCCATTAATGTCCTTGTGGCCCAGTTCAAGACTTTTGCTGCTAAAGATGGCAGCTCACACACCCTGAGCAAAGAAGAATTCCAGACCCTTGTGGCATCCCAGCTACCAAACCTTGTCAAGAATGCCAGTGATCCTGGTGTGATCGACCATCTCATGAGCTCCTTAGATGAGAACAATGATGGGGAACTGACATTTCAGGAATTCTGGCAGCTCATTGGCAAACTGGCAAGCAAACATGGTGGCTTCAGCCAATAGCTTTAAAGGCAAACAATTTGAAATATCTCAGTGATACACTTGCAAGCAATTCAGGTCAAATAGAACCATGAGACCTTCCCATCTAGCTCTAACACAAAAGAGTGTAAGTTAACCATTGACAAAGACAAGAggtgtaaaataaaaagctattgTTGTAGTCATAGGTTTTATGGACCTTATGGACCTTGTAATAAAAGATTACATATATGTGGTATATTCAGCTGATTCTCTTCCTATCTTTGTTTTCCTAAATCAGTAGAGGGCTACCTTACTTTATATCAAAGctacaaatgacaaaaacacatcttGTTGCAAATGAATAGGCCTACAGCCAAAGCCACATTCTTTCAGCTGTGTTATGACTTACTGATGGAAGAATTCTTTACACACTGGTCTTTAAAGTTAAGTTAAAGCAGATCTGCTTAGCCATCATTCTATTCACTCATAATACATGTACATTTACTAAAGAAATGCTTGCACATATGTATGGTCCTATAACAATCACCATAATATTCCAGTTGGATGCTTTGAAACCGGAGGAGTCATATGAAAGATGGAGgcagattaaaaacaaataaagatgtCAATGTTATAATAGTAGTTGCAATGTAGTATCAATT
>TU480965
TCGTTTTCCGCTGAGCTGTGCTTTAGGGTGAAGGGAATAAAAGTGGaggtgaaaatgaaatgaaacattagTTTGCTTGCTTCTGCTACCAATACAACACTCCTCAGTGTAACCTCCCATTCCGATTAGACATGGAGACTGCCATTAATGTCCTTGTGGCCCAGTTCAAGACTTTTGCTGCTAAAGATGGCAGCTCACACACCCTGAGCAAAGAAGAATTCCAGACCCTTGTGGCATCCCAGCTACCAAACCTTGTCAAGAATGCCAGTGATCCTGGTGTGATCGACCATCTCATGAGCTCCTTAGATGAGAACAATGATGGGGAACTGACATTTCAGGAATTCTGGCAGCTCATTGGCAAACTGGCAAGCAAACATGGTGGCTTCAGCCAATAGCTTTAAAGGCAAACAATTTGAAATATCTCAGTGATACACTTGCAAGCAATTCAGGTCAAATAGAACCATGAGACCTTCCCATCTAGCTCTAACACAAAAGAGTGTAAGTTAACCATTGACAAAGACAAGAggtgtaaaataaaaagctattgTTGTAGTCATAGGTTTTATGGACCTTATGGACCTTGTAATAAAAGATTACATATATGTGGTATATTCAGCTGATTCTCTTCCTATCTTTGTTTTCCTAAATCAGTAGAGGGCTACCTTACTTTATATCAAAGctacaaatgacaaaaacacatcttGTTGCAAATGAATAGGCCTACAGCCAAAGCCACATTCTTTCAGCTGTGTTATGACTTACTGATGGAAGAATTCTTTACACACTGGTCTTTAAAGTTAAGTTAAAGCAGATCTGCTTAGCCATCATTCTATTCACTCATAATACATGTACATTTACTAAAGAAATGCTTGCACATATGTATGGTCCTATAACAATCACCATAATATTCCAGTTGGATGCTTTGAAACCGGAGGAGTCATATGAAAGATGGAGgcagattaaaaacaaataaagatgtCAATGTTATAATAGTAGTTGCAATGTAGTATCAATT
>XM_026927989.2
TCTCGTTTTCCGCTGAGCTGTGCTTTAGGGTGAAGGGAATAAAAGTGGaggtgaaaatgaaatgaaacattagTTTGCTTGCTTCTGCTACCAATACAACACTCCTCAGTGTAACCTCCCATTCCGATTAGACATGGAGACTGCCATTAATGTCCTTGTGGCCCAGTTCAAGACTTTTGCTGCTAAAGATGGCAGCTCACACACCCTGAGCAAAGAAGAATTCCAGACCCTTGTGGCATCCCAGCTACCAAACCTTGTCAAGAATGCCAGTGATCCTGGTGTGATCGACCATCTCATGAGCTCCTTAGATGAGAACAATGATGGGGAACTGACATTTCAGGAATTCTGGCAGCTCATTGGCAAACTGGCAAGCAAACATGGTGGCTTCAGCCAATAGCTTTAAAGGCAAACAATTTGAAATATCTCAGTGATACACTTGCAAGCAATTCAGGTCAAATAGAACCATGAGACCTTCCCATCTAGCTCTAACACAAAAGAGTGTAAGTTAACCATTGACAAAGACAAGAggtgtaaaataaaaagctattgTTGTAGTCATAGGTTTTATGGACCTTATGGACCTTGTAATAAAAGATTACATATATGTGGTATA

Function

NR:

description
PREDICTED: protein S100-A13-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480964 False 976 TUCP 0.38 3 13759761 13761516
TU480965 True 1015 TUCP 0.39 3 13759761 13761555
XM_026927989.2 False 613 mRNA 0.42 3 13760165 13761557

Neighbor

gene id symbol gene type direction distance location
s100u LOC108272971,LOC108433761 coding downstream 1333 13752813 ~ 13758428 (-)
s100s s100s,LOC108272970,LOC108433762,LOC103039105,LOC107716593,LOC107670010,LOC107559723 coding downstream 9259 13746878 ~ 13750502 (-)
pygo2 LOC108273220,LOC108433763,LOC103036475,LOC107693316,LOC107729895 coding downstream 25000 13729127 ~ 13734761 (-)
cgnb LOC108272895 coding downstream 33606 13689122 ~ 13726155 (-)
tuft1b LOC108272645 coding downstream 81470 13646267 ~ 13678291 (-)
pbxip1a LOC108273227 coding upstream 98 13761655 ~ 13771533 (-)
LOC113535216 LOC108272677,LOC108433755,LOC107727734,LOC103040142,LOC107754022,LOC107549876,LOC107563022,LOC107666341,LOC107665170 coding upstream 21405 13782962 ~ 13804588 (-)
oxnad1 oxnad1 coding upstream 164278 13925835 ~ 14000665 (-)
igf2bp3 igf2bp3,LOC108273237,LOC107748676,LOC107592016 coding upstream 255131 14016688 ~ 14046043 (-)
ccdc126 ccdc126 coding upstream 305760 14067317 ~ 14074175 (-)
G405386 NA non-coding downstream 24013 13735536 ~ 13735748 (-)
G405368 NA non-coding downstream 53219 13655405 ~ 13706542 (-)
G405353 NA non-coding downstream 153869 13601027 ~ 13605892 (-)
LOC113535067 NA non-coding downstream 195812 13559889 ~ 13563949 (-)
G405206 LOC108273195,LOC108437913,LOC103394518,LOC103356295 non-coding downstream 304964 13452399 ~ 13454797 (-)
G405419 NA non-coding upstream 46926 13808483 ~ 13814892 (-)
G405420 NA non-coding upstream 54341 13815898 ~ 13872428 (-)
G405575 NA non-coding upstream 314885 14076442 ~ 14077150 (-)
LOC117596429 NA non-coding upstream 421929 14183486 ~ 14191755 (-)
G405681 NA non-coding upstream 494967 14256524 ~ 14329200 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 201130 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 215256 13542003 ~ 13544505 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other downstream 366928 13389916 ~ 13392833 (-)
G404999 NA other downstream 618646 13140694 ~ 13141115 (-)
trnav-cac_26 NA other downstream 1180110 12579580 ~ 12579651 (-)
npy npy other upstream 319815 14081372 ~ 14083846 (-)
G405588 NA other upstream 353062 14114619 ~ 14119658 (-)
tpbga LOC108272337 other upstream 713919 14475476 ~ 14479077 (-)
G405961 NA other upstream 1205919 14967476 ~ 15013988 (-)

Expression


Co-expression Network