G405419


Basic Information

Item Value
gene id G405419
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13808483 ~ 13814892 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU480985
CTTTTCTCTGACGTTCTCAAAAGAGGAAGGTGAGACAACGGAGAAGCACACAAGAAAAACATCTGTCTGAGGGTAACTCAGGGGCCGTAGCCTGTCATAGTCCTCTTGACCTAAACAGCAAAAATGTTAATGACAAAGCAGTAATTAAGACATTTTGAAGGTTGTTGGGATTGTAGCCAACTACCTTAAAATCTGTAGTTTGTACATcagaagtaaataaagtagAGGCTCAGATTTCAAAACTAACATGGTAGAGACTCCCATGATGGTGAACAACCTGAAGAGAACCAGTCATGTATAACCTGGGGCCATATTACAGAAacatcataaatttaaaatcctATCCTATCTGTTTAGTAACCACAACAACTACAGTTATGCTCTAATTTACGACAGCAACTATTATAGAACAACGAGCTATACTTTCTACTGTAGGTAGAAAAATAGGATTATAGAAGCCTAACCTGAAATGTCCTCTAACTTTAGGACAACCCTAacggtgttgtttttttttcccctaaccATTTTTACTGTGAGACCAATATGATTTTTTCCTTGATTGATATAAAATTGTGTAGCACACAACAACTTTTGATTGTTTATTAAGGAACTGTCTGTAATTTGACTGAGATAAAGTAACTGCTGACTCATACACCTAATTACAGAATCATATGTActtaccatccactttattaggaagtacaagaatggggaaaaatgtgatctcagtgactttcagATAcattcccccattctgatgctgGATGTTAActttatctgaagctcttgacctgtatctgcatgatttaataCACTGTgctgcttccacatgattggctgactggataattcataaatgagcaggtgtacaggtattcctattaaagtgttgTACCTAAATTAggtcatttaatttaatttaatttaatttaaaactttaCAGCCTTGGTCTAATTCTTCTTGACAGAAAGTTTGAATTGATTTGGTGAACCATATGTAGTATTTACAGCTCACTGGGCTAACTCCGTGGACAAACAAAATTTTGTCCCTTTGCAGTGTAATTAGTAGTCAAGTTCTGGGATTAATTAGGGGCAGTTATTTATCTTTAACCTGATTCATTGTACCTGCTGTGTCAAAAAGTCCAAGTGTGTATGGCTCTCCTCCAATCATTACAGTGACTGCATAGTTATCAAACCGTAGGCACGTATTCTGAAGGGAACTTGTTGGTTGTGTAGGAGATCAATAAACATGTCTTTCCCACCGCACCATCTCCCACCACCACACATTTTATGGTCTGCATCTGagggaaacagaaaaaagtgcaTACGGGACAGAATGCAAATATTTAAGAATgaatctgtttatgtttttactTGTACTGTTACAAAAACTTTGGTACATATGTGGTTAAAGTGCTGTGCATGTTAAAAGCTGAAGAATGGAGAATGAGAATGAATTAAACAGATGAACAGCGTTACTGTGTTTATGTGTCCTGTGACCAGTGAGGACATTAACGCCACACATGCTGATGAAACCTGCTATACAGCTGGGCCTACTGTTGACCACACCACTGCCATGAATCATagtgtttataatataaattcTGCTGTGTTGATGCCAAGTTAAGCTGAAACACAAACGCCTGTCTGACTTCAAccaatctctctttttcagttctatcatcataaatataattcaatacatcatacataaacacagtcACATATAAACATGCCAAAAATAGATGGACCTTAAATCAAGttgaaaagaacaaaatttaGTCGTCTCTCTCTTCCCAAAACACCATGGGACGACAGAAAATATTGAAATGTAGTGGATCCATGAATGTCACAGCTGTGTCCTGCACCGTGCTGCTATCTGATCAGACACACAGGAGTCTGCACTTCCGCATAACTAGCCAGGCTCCTTCACAGTCTATAGGAAAGACCCGGCAAACGTAtggctttacagaacataatataaatataacaaataaaactgtCCACAAATTCAGATCACAGGATTTTTGCGAAATGCGGAATTCTTTAGTCTCAGAACAATTTCTCTGAGTTAGAACAAACTGCTGATGAAGTCAGCGCGCGAGGCAGCTTCCTCCACTCCCAGCGCCTCGGCTTCCTCCCCAGCGTTACACCAGCACAGGGCAGCGTTAGAGTCAAAATAATGCACACTGCCTCTTCACTTCTTCgaagataaattaaaaaaatatatatgtatatataaatatcgtGGTTTACGGGAGTAACAGATTTAGTTTCATTAGGAGAGAGTTAGCTGTTAGACAGGAAGTAAAGCAGGCCAATACATAACTTATCATTAGCTAAGCGTCAAATCCTAGCTAACCGTCTTATTTAAGCGTATTTAACTTTTCTCAGAGTGGTCCTgtaaagtgtgttagtgttcaggcCCAAAGCCAAAGAGTCTCGTTAACTCCTAGAGGGTCAGTTTTAGACTTTTCAGGGTTTCAGGTGTTGACAGCGCAAGGCAAGTTGTCACACTCAGCCAGAGAgcgttagcaagctagctaatccGCGAGGGAAAGGAAACAAGCCGACTAAACCGACCCACTAAATGAAGCACATCGTTAGACTAAGTCAGCCTAATTACTACGCAACGATATTCTTATTACAGTTTTCCCATTACAAACTAGGTATAATGTGGGTCTAACTAAATGAAGCGATTTAAATCTCAGCAGCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480985 True 2717 lncRNA 0.39 2 13808483 13814892

Neighbor

gene id symbol gene type direction distance location
LOC113535216 LOC108272677,LOC108433755,LOC107727734,LOC103040142,LOC107754022,LOC107549876,LOC107563022,LOC107666341,LOC107665170 coding downstream 3895 13782962 ~ 13804588 (-)
pbxip1a LOC108273227 coding downstream 36950 13761655 ~ 13771533 (-)
s100u LOC108272971,LOC108433761 coding downstream 50055 13752813 ~ 13758428 (-)
s100s s100s,LOC108272970,LOC108433762,LOC103039105,LOC107716593,LOC107670010,LOC107559723 coding downstream 57981 13746878 ~ 13750502 (-)
pygo2 LOC108273220,LOC108433763,LOC103036475,LOC107693316,LOC107729895 coding downstream 73722 13729127 ~ 13734761 (-)
oxnad1 oxnad1 coding upstream 110943 13925835 ~ 14000665 (-)
igf2bp3 igf2bp3,LOC108273237,LOC107748676,LOC107592016 coding upstream 201796 14016688 ~ 14046043 (-)
ccdc126 ccdc126 coding upstream 252425 14067317 ~ 14074175 (-)
mpp6b mpp6,LOC108272353,LOC107592011 coding upstream 325052 14139944 ~ 14168596 (-)
dazl dazl coding upstream 357942 14172834 ~ 14195466 (-)
G405386 NA non-coding downstream 72735 13735536 ~ 13735748 (-)
G405368 NA non-coding downstream 101941 13655405 ~ 13706542 (-)
G405353 NA non-coding downstream 202591 13601027 ~ 13605892 (-)
LOC113535067 NA non-coding downstream 244534 13559889 ~ 13563949 (-)
G405206 LOC108273195,LOC108437913,LOC103394518,LOC103356295 non-coding downstream 353686 13452399 ~ 13454797 (-)
G405420 NA non-coding upstream 1006 13815898 ~ 13872428 (-)
G405575 NA non-coding upstream 261550 14076442 ~ 14077150 (-)
LOC117596429 NA non-coding upstream 368594 14183486 ~ 14191755 (-)
G405681 NA non-coding upstream 441632 14256524 ~ 14329200 (-)
G405701 NA non-coding upstream 498847 14313739 ~ 14314834 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 46926 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 249852 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 263978 13542003 ~ 13544505 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other downstream 415650 13389916 ~ 13392833 (-)
G404999 NA other downstream 667368 13140694 ~ 13141115 (-)
npy npy other upstream 266480 14081372 ~ 14083846 (-)
G405588 NA other upstream 299727 14114619 ~ 14119658 (-)
tpbga LOC108272337 other upstream 660584 14475476 ~ 14479077 (-)
G405961 NA other upstream 1152584 14967476 ~ 15013988 (-)

Expression


Co-expression Network