G405420


Basic Information

Item Value
gene id G405420
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13815898 ~ 13872428 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU480986
tttttttaagAGGATCAAAATACCACATCTTTAATGTCGATCACTTAGTAATAATGAAAGAATGCCTACTGATTTTTTTGATACAAAATGAATATTTGTATATTGGTGGTAAAAATCCACACCCTGTGCACgcggagcttgcatgttctcgccgtgcttcgggggttcttccccagtccaaagacgtgttgtaggctgactggcattacCAAAtcgtccatagtgtgtgaatgggtgtgtgagtgtgtgcacaatTGTGCCCTGCTCCGAGTCCTCTGGGATatgctccaggctccccattaCCCTATGATAAGCGGTACAGAcaagtgatggatggatggatttctaCTATGAGTGTAGGTCAAATAAGCGGACATCAAAATCAATTCCCTGAGAAATAAAGACCATTTCTGTATTAGATTtgaagaaaatgtgtaaatgcataaaatatgaCAAAGGTCTCCTTacaattcatgtttttttttttatattacagttacaCATAAAATCTACTCCCACATCAGTTCCACATcctgcatttttattacttgtaaattaTTATTGCTTTAATTACCATGGCTACCAATGTAGAGACCAGCTAATGTAATAgattataatgcatttttctttaaaagtcaAAAAGACCAACCAAGGTGATAAAGTGGCACctaaaaaaacagcacaaaagaaatcaaacaatattaaaaaaaattgcactaaAATCTCCAAGTCCTAACTGTTAAACACCCACtcaccaaaataaaaacaaaaataatcatacaATACTTGTGTCATTATTAATACGccacaatcattaaaaaaaattcagtttaagtCCTGCAGAGGGCAGAGGTGGTAAGAAACACTTGGAGTTCCAATTGCCTCAAtgaaaaggaatgaaagaaggaaaacaaCTGATTGCTTTAgcatggtctttttttttttttaaagactgctGAGGCTAAACAAAGTCAAAGTGAGGGatgtgaaaaacacatttaagtgGTTGTTTGTTTAAGTAATGGCAGACttgtagaaagaaaaaaaaaaacgccagtCATCCATTTCCATGTTTTGaacgcattttttttttgtgtataggTAGGTCTTGTATAGAAAGACTGGCTATTAGTCAGGAAGAGAGATGTCAGCATATTACCACACAAACCACTCTTAATTTTGTAAAACTAAAGGCACTGTCTGAATGCctcacatttttctccccatCAACTTGTTCCCAAATTTCTTTTATAAGAGAATGCAGCGTTTCTTGGGTTTGGTCTCAGGAGGCTCCAGGGCAGCCAAGATGGCTTCATCAAAGACATTCTTTAATCCTCT
>TU480987
cttttttttttttttttttttaaagactgctGAGGCTAAACAAAGTCAAAGTGAGGGatgtgaaaaacacatttaagtgGTTGTTTGTTTAAGTAATGGCAGACttgtagaaagaaaaaaaaaaacgccagtCATCCATTTCCATGTTTTGaacgcattttttttttgtgtataggTAGGTCTTGTATAGAAAGACTGGCTATTAGTCAGGAAGAGAGATGTCAGCATATTACCACACAAACCACTCTTAATTTTGTAAAACTAAAGGCACTGTCTGAATGCctcacatttttctccccatCAACTTGTTCCCAAATTTCTTTTATAAGAGAATGCAGCGTTTCTTGGGTTTGGTCTCAGGAGGCTCCAGGGCAGCCAAGATGGCTTCATCAAAGACATTCTTTAATCCTCT
>TU480988
cacgtACGCAGTtgtgcagttatctaatcagccaataatatggcagcagtgcaatgcaaaaaaaatcatgccgatacaggtcaagagtttcagttaatgttcacacatcaaacatcagtatGTGTGATCCCTGTGACATTTtattgtggcatggttgctggtatcagatgggctggtttgagtatttcagaaactgcagatctctggaatttcacacacaacagtctctatagtttatacagaatgctgaaaaaaacaaaaaacatggagCAACATTTGTgtgtggaaacgccttgttgataaagGTCAGACGAAAattggccagattggtttgagctgtgtgcgtgtgtatgtgtgtaatgaatTATGACTAagcagatttgagaattcaaccacgctgtggtataaatatatataaaaatcttcAAAACATACCTGTAAAGCCAACTCACATGACCACGTATAGTCTTTATATACATGAAATACTGTGTTCAAAGAGTGACTGATGCCTGAACATACCGCACCTGACAAATTGACTGAAGGCCTTGTAGTTGGTAAGAGATCTGTAGTCCTCTTCAGTAAAGACATGGTCAATGTCCTCCATGCCCCAGGTATCCAGCAGCTGGGAGGAGGTCTTCGGCTCCTGGAAAAAGTTTTAcagaatatgtttttttttttttttttttttttatAAATAAAGACCATTTCTGTATTAGATTtgaagaaaatgtgtaaatgcataaaatatgaCAAAGGTCTCCTTacaattcatgtttttttttttatattacagttacaCATAAAATCTACTCCCACATCAGTTCCACATcctgcatttttattacttgtaaattaTTATTGCTTTAATTACCATGGCTACCAATGTAGAGACCAGCTAATGTAATAgattataatgcatttttctttaaaagtcaAAAAGACCAACCAAGGTGATAAAGTGGCACctaaaaaaacagcacaaaagaaatcaaacaatattaaaaaaaattgcactaaAATCTCCAAGTCCTAACTGTTAAACACCCACtcaccaaaataaaaacaaaaataatcatacaATACTTGTGTCATTATTAATACGccacaatcattaaaaaaaattcagtttaagtCCTGCAGAGGGCAGAGGTGGTAAGAAACACTTGGAGTTCCAATTGCCTCAAtgaaaaggaatgaaagaaggaaaacaaCTGATTGCTTTAgcatggtctttttttttttttaaagactgctGAGGCTAAACAAAGTCAAAGTGAGGGatgtgaaaaacacatttaagtgGTTGTTTGTTTAAGTAATGGCAGACttgtagaaagaaaaaaaaaaacgccagtCATCCATTTCCATGTTTTGaacgcattttttttttgtgtataggTAGGTCTTGTATAGAAAGACTGGCTATTAGTCAGGAAGAGAGATGTCAGCATATTACCACACAAACCACTCTTAATTTTGTAAAACTAAAGGCACTGTCTGAATGCctcacatttttctccccatCAACTTGTTCCCAAATTTCTTTTATAAGAGAATGCAGCGTTTCTTGGGTTTGGTCTCAGGAGGCTCCAGGGCAGCCAAGATGGCTTCATCAAAGACATTCTTTAATCCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480986 False 1338 lncRNA 0.36 2 13815898 13872428
TU480987 False 412 lncRNA 0.36 2 13815898 13869755
TU480988 True 1635 lncRNA 0.36 2 13815898 13839833

Neighbor

gene id symbol gene type direction distance location
LOC113535216 LOC108272677,LOC108433755,LOC107727734,LOC103040142,LOC107754022,LOC107549876,LOC107563022,LOC107666341,LOC107665170 coding downstream 11310 13782962 ~ 13804588 (-)
pbxip1a LOC108273227 coding downstream 44365 13761655 ~ 13771533 (-)
s100u LOC108272971,LOC108433761 coding downstream 57470 13752813 ~ 13758428 (-)
s100s s100s,LOC108272970,LOC108433762,LOC103039105,LOC107716593,LOC107670010,LOC107559723 coding downstream 65396 13746878 ~ 13750502 (-)
pygo2 LOC108273220,LOC108433763,LOC103036475,LOC107693316,LOC107729895 coding downstream 81137 13729127 ~ 13734761 (-)
oxnad1 oxnad1 coding upstream 53407 13925835 ~ 14000665 (-)
igf2bp3 igf2bp3,LOC108273237,LOC107748676,LOC107592016 coding upstream 144260 14016688 ~ 14046043 (-)
ccdc126 ccdc126 coding upstream 194889 14067317 ~ 14074175 (-)
mpp6b mpp6,LOC108272353,LOC107592011 coding upstream 267516 14139944 ~ 14168596 (-)
dazl dazl coding upstream 300406 14172834 ~ 14195466 (-)
G405419 NA non-coding downstream 1006 13808483 ~ 13814892 (-)
G405386 NA non-coding downstream 80150 13735536 ~ 13735748 (-)
G405368 NA non-coding downstream 109356 13655405 ~ 13706542 (-)
G405353 NA non-coding downstream 210006 13601027 ~ 13605892 (-)
LOC113535067 NA non-coding downstream 251949 13559889 ~ 13563949 (-)
G405575 NA non-coding upstream 204014 14076442 ~ 14077150 (-)
LOC117596429 NA non-coding upstream 311058 14183486 ~ 14191755 (-)
G405681 NA non-coding upstream 384096 14256524 ~ 14329200 (-)
G405701 NA non-coding upstream 441311 14313739 ~ 14314834 (-)
G405707 NA non-coding upstream 506464 14378892 ~ 14385650 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 54341 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 257267 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 271393 13542003 ~ 13544505 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other downstream 423065 13389916 ~ 13392833 (-)
G404999 NA other downstream 674783 13140694 ~ 13141115 (-)
npy npy other upstream 208944 14081372 ~ 14083846 (-)
G405588 NA other upstream 242191 14114619 ~ 14119658 (-)
tpbga LOC108272337 other upstream 603048 14475476 ~ 14479077 (-)
G405961 NA other upstream 1095048 14967476 ~ 15013988 (-)

Expression


Co-expression Network