G405588


Basic Information

Item Value
gene id G405588
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14114619 ~ 14119658 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU481171
actttattaggaacacctgtacacctgctcatttatgtagCTATActtgtggcagcagcacaatgcataagtTCAGGCAgatggtgccagatgggctggtttgagtatgaatatcaaaaactgctgatctcctgggattttcacacacaacagtctctgaaactctgtgaaaatcccaggatatcagcagtttctgaaatactcaatccagctCTTCTGGCAGCAGCAACCATgccagagatcacactttttccccatttcgatgtttgatgtgaacattatctgaagctcctgacctgtatctgcatgattttatgcattgtgctgctgccatatgattggttgatttgtcttgctacgatggcttaggagTACAATTGCTGTGATAgttttaggactgcaattgccatgaacagtttgcactcaggtctctatcagtgaacagtggataagttcaacaaaacagacttcatgtgaaaactgtaatgaatttactggttacacatttgcactatttgtccatatagtacacagttatgaagggatttatttataatcgcactatcgggtgtcacccagatgaggatggttccctgtggagtctggttcctctcaagttttcttcctcatatcatctcagggagtttttcactgccactgtcacctctggctcactcattagggataaattcatacatttaaaatttatatcctgaatgtatttatttttgtaaagctgctttgtgacaatgtccatcgttaaaagcgctatacaaataaaagaaaattgaattgaattaaatattcattatgagcTCTACCACTTCTTACACACCAGATACAGGAAGTGCATTTATTGTCTCAAAAGGTTGTGCTACAAAGTATTTGGTTAAAGGTCCCAGTATTTGCccatgccattttcatttgttctattatttaaaataacatctTCAGTAaaacacgtgtgtgtgcgtgtgtgtgttctcttctCACCCTGCCAAAGTGTGAAGTTTTTGGATTCGCAGTGGCATGCAGACACAGGAGGGTGGTGGCTTACCTGAGGAATGGGGAAACGCAGTGTGCATGAGCGAATACTTctgtgagGTTGCTCATATTGGGACAAGTCAAGAAGATCAGCGATTCACAAACCTAGTTCGTATGTTTtgtattcagaccccttcagtaCTTTGTAGAAGCTCCTTTGGCAGCAGTTACAGCTTTGAGTCTTCTTGGAGAAAAAACGACAGGACTCACCAGTACTGGCCAACCTGCAGAAGTCCTCCTGCAACTGCGAGGCATCAGTGGGTGAGTCTGGCGTGTCTAGATGTGACTCTGGACAGCAAGGCTCAGAATATGTCAGGTTTGGGTTTGAAACATGTAGATGAGCAGATGAAGTTGAGCCAGAAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU481171 True 1409 TUCP 0.42 4 14114619 14119658

Neighbor

gene id symbol gene type direction distance location
ccdc126 ccdc126 coding downstream 40444 14067317 ~ 14074175 (-)
igf2bp3 igf2bp3,LOC108273237,LOC107748676,LOC107592016 coding downstream 68576 14016688 ~ 14046043 (-)
oxnad1 oxnad1 coding downstream 113954 13925835 ~ 14000665 (-)
LOC113535216 LOC108272677,LOC108433755,LOC107727734,LOC103040142,LOC107754022,LOC107549876,LOC107563022,LOC107666341,LOC107665170 coding downstream 310031 13782962 ~ 13804588 (-)
pbxip1a LOC108273227 coding downstream 343086 13761655 ~ 13771533 (-)
mpp6b mpp6,LOC108272353,LOC107592011 coding upstream 20286 14139944 ~ 14168596 (-)
dazl dazl coding upstream 53176 14172834 ~ 14195466 (-)
tbc1d5 tbc1d5,LOC107592018,LOC107739565,LOC107748680 coding upstream 76297 14195955 ~ 14218170 (-)
arid1ab LOC108272722,LOC108415569 coding upstream 201207 14320865 ~ 14388466 (-)
nudc nudc,LOC107689540,LOC107700719 coding upstream 321142 14440800 ~ 14452371 (-)
G405575 NA non-coding downstream 37469 14076442 ~ 14077150 (-)
G405420 NA non-coding downstream 242191 13815898 ~ 13872428 (-)
G405419 NA non-coding downstream 299727 13808483 ~ 13814892 (-)
G405386 NA non-coding downstream 378871 13735536 ~ 13735748 (-)
G405368 NA non-coding downstream 408077 13655405 ~ 13706542 (-)
LOC117596429 NA non-coding upstream 63828 14183486 ~ 14191755 (-)
G405681 NA non-coding upstream 136866 14256524 ~ 14329200 (-)
G405701 NA non-coding upstream 194081 14313739 ~ 14314834 (-)
G405707 NA non-coding upstream 259234 14378892 ~ 14385650 (-)
G405900 NA non-coding upstream 498991 14618649 ~ 14686310 (-)
npy npy other downstream 30773 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 353062 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 555988 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 570114 13542003 ~ 13544505 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other downstream 721786 13389916 ~ 13392833 (-)
tpbga LOC108272337 other upstream 355818 14475476 ~ 14479077 (-)
G405961 NA other upstream 847818 14967476 ~ 15013988 (-)

Expression


Co-expression Network