G405681


Basic Information

Item Value
gene id G405681
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14256524 ~ 14329200 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU481287
gctgttataataagctccactcttctgggaagctttccacttggagcgtggctgtggggatttgtgttcattcagctacaagagcattagtgaggtcaggcactgatgttgggatgtcgaggaggtctggggttcagtcggtgttccagttcatcccaaaggtgttcagtggggttgaggtcagggctctgtgcaggacactcgagttcttccactccaaccttcacacaccatgtcttcatggagctcgctttgtgcacaggggcat
>TU481288
gctgttataataagctccactcttctgggaagctttccactagtggctgtggggatttgtgttcattcagctacaagagcattagtgaggtcaggcgctgatgttgggatgtcgaggaggtctggggttcagtcggtgttccagttcatcccaaaggtgttcagtggggttgaggtcagggctctgtgcaggacactcgagttcttccactccaaccttcacacaccatgtcttcatggagctcgctttgtgcacaggagcattgtcatgctggaacaggtttgagtctcttagttccagtgaagggaaactgtaatgttacaacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU481287 False 268 lncRNA 0.52 2 14304939 14329200
TU481288 True 330 lncRNA 0.50 2 14256524 14329200

Neighbor

gene id symbol gene type direction distance location
tbc1d5 tbc1d5,LOC107592018,LOC107739565,LOC107748680 coding downstream 38354 14195955 ~ 14218170 (-)
dazl dazl coding downstream 61058 14172834 ~ 14195466 (-)
mpp6b mpp6,LOC108272353,LOC107592011 coding downstream 87928 14139944 ~ 14168596 (-)
ccdc126 ccdc126 coding downstream 182349 14067317 ~ 14074175 (-)
igf2bp3 igf2bp3,LOC108273237,LOC107748676,LOC107592016 coding downstream 210481 14016688 ~ 14046043 (-)
nudc nudc,LOC107689540,LOC107700719 coding upstream 111600 14440800 ~ 14452371 (-)
kdf1b LOC108273298 coding upstream 131192 14460392 ~ 14470818 (-)
tmem222b tmem222,tmem222b,LOC108273317,LOC103043641,LOC105903612,LOC107550652,LOC107754919 coding upstream 152737 14481937 ~ 14491263 (-)
trnat-ugu_14 NA coding upstream 214017 14543217 ~ 14543289 (-)
trnat-ugu_15 NA coding upstream 216906 14546106 ~ 14546178 (-)
LOC117596429 NA non-coding downstream 64769 14183486 ~ 14191755 (-)
G405575 NA non-coding downstream 179374 14076442 ~ 14077150 (-)
G405420 NA non-coding downstream 384096 13815898 ~ 13872428 (-)
G405419 NA non-coding downstream 441632 13808483 ~ 13814892 (-)
G405386 NA non-coding downstream 520776 13735536 ~ 13735748 (-)
G405707 NA non-coding upstream 49692 14378892 ~ 14385650 (-)
G405900 NA non-coding upstream 289449 14618649 ~ 14686310 (-)
G405901 NA non-coding upstream 290138 14619338 ~ 14654751 (-)
G405906 NA non-coding upstream 315653 14644853 ~ 14966111 (-)
G405909 NA non-coding upstream 358823 14688023 ~ 14720906 (-)
G405588 NA other downstream 136866 14114619 ~ 14119658 (-)
npy npy other downstream 172678 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 494967 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 697893 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 712019 13542003 ~ 13544505 (-)
tpbga LOC108272337 other upstream 146276 14475476 ~ 14479077 (-)
G405961 NA other upstream 638276 14967476 ~ 15013988 (-)

Expression


Co-expression Network