G405701


Basic Information

Item Value
gene id G405701
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14313739 ~ 14314834 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU481309
TTTCATCAACCTGGGGTAAACGGATGAATCGATTGCATTACTCACACATGACTTTACCAGTGTTCTATACTAATGACTAGAAGGTCACAAGTTCAGTTTCCCAGAGCTTTGGTTGATCTAAAGTTTTAATAATCCTATAAAATGACATAATACAAAGTCCATCTCTtcctaaatatttaaaagtacaaacattttacaaaacaacaaatctACGAGTTAttgcacatttttcttttgttgttgccTTTAACTACAaggttgtatttttttcatcacttgtATAGAAGTTAAGACCAAACACAGTAAGACTTTCCAAATCCTGTACCATGCAGAGCAACAACCACTCAGCACGTTTTCTTACCATGGACCTTCATCTTACAAATGCTTGTATTTATCACAATTTGTTTAAATAAGTGCAGATTTTTACATAGAAAATGTAGCAGAAGTATGTGGCTTTTTTGAGTAATGTCACTTGCATGACGTATAAAGTATGTTCATCTACATGAGGCCAAACTCTACCATAGAAAATATACAGCTATTATTTAAAGTTGGTTTACGTACACAGGTTCTCACTCAGACAtgtgaaatgttatttttttttggcagggGTAATGTTTAAGAAACATGAGGGACACTATGTACACTCCAAGATGTCCTTGtgcagattacacacacatacccatgTCTCTCTAAGATCATCTACACTATCAGAGAGTTTTGAAGCTCTGCTGATGTACAGTTTTTGTGCTACAACCAATTTTATGGAAACAGTTTCCGGACTGCAAAAACTTTCATGTTGGAAAGAGCTCATGCCAATAAAGTCTGACAAGTGCCATTGGAGAAAAAAGTGCAAGAAAAGggattagggtgaggACGATTCCCTCAGACTGTTCTACTTGTCGATAAGGCCAGCCTCTTTAATCTTAATGTAGAAGTACTTCTCCAGCAGGTTCGCACACTTGTAGTACTCGCTCTCGGGAGGGTTGTACTCCCGACAGTTAGTGAAGATCCGCTGCATGTCCGCCATGAACAGCTTCCTTGTGGTGTAGTAGCGACTCTTTAGGCGCTCACTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU481309 True 1074 lncRNA 0.38 2 14313739 14314834

Neighbor

gene id symbol gene type direction distance location
tbc1d5 tbc1d5,LOC107592018,LOC107739565,LOC107748680 coding downstream 95569 14195955 ~ 14218170 (-)
dazl dazl coding downstream 118273 14172834 ~ 14195466 (-)
mpp6b mpp6,LOC108272353,LOC107592011 coding downstream 145143 14139944 ~ 14168596 (-)
ccdc126 ccdc126 coding downstream 239564 14067317 ~ 14074175 (-)
igf2bp3 igf2bp3,LOC108273237,LOC107748676,LOC107592016 coding downstream 267696 14016688 ~ 14046043 (-)
arid1ab LOC108272722,LOC108415569 coding upstream 6031 14320865 ~ 14388466 (-)
nudc nudc,LOC107689540,LOC107700719 coding upstream 125966 14440800 ~ 14452371 (-)
kdf1b LOC108273298 coding upstream 145558 14460392 ~ 14470818 (-)
tmem222b tmem222,tmem222b,LOC108273317,LOC103043641,LOC105903612,LOC107550652,LOC107754919 coding upstream 167103 14481937 ~ 14491263 (-)
trnat-ugu_14 NA coding upstream 228383 14543217 ~ 14543289 (-)
LOC117596429 NA non-coding downstream 121984 14183486 ~ 14191755 (-)
G405575 NA non-coding downstream 236589 14076442 ~ 14077150 (-)
G405420 NA non-coding downstream 441311 13815898 ~ 13872428 (-)
G405419 NA non-coding downstream 498847 13808483 ~ 13814892 (-)
G405386 NA non-coding downstream 577991 13735536 ~ 13735748 (-)
G405707 NA non-coding upstream 64058 14378892 ~ 14385650 (-)
G405900 NA non-coding upstream 303815 14618649 ~ 14686310 (-)
G405901 NA non-coding upstream 304504 14619338 ~ 14654751 (-)
G405906 NA non-coding upstream 330019 14644853 ~ 14966111 (-)
G405909 NA non-coding upstream 373189 14688023 ~ 14720906 (-)
G405588 NA other downstream 194081 14114619 ~ 14119658 (-)
npy npy other downstream 229893 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 552182 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 755108 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 769234 13542003 ~ 13544505 (-)
tpbga LOC108272337 other upstream 160642 14475476 ~ 14479077 (-)
G405961 NA other upstream 652642 14967476 ~ 15013988 (-)

Expression


Co-expression Network