G405707


Basic Information

Item Value
gene id G405707
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14378892 ~ 14385650 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU481315
CTTTACTCTCCTCAACATGAGGAGACGTCTGCGTAGAAAATCACAGACACGTATCAGACTAAACTGATCAAACGAGTGCTGAGTTACAGTAGTTAATTCAGCGTGAAATTCTCTCAGAGGAGGACGGAGACAAACAGCGACATGGCCGAGGAATAAAATCAGAGAGGAGCTCCTGCACAATAAGAAATGACCCCAGGACCCCGTGTACATTTAATCCTGTCCGAATACGGCTCATGTTTCCACTGATTCTGTGCACACTTTGATTGGACAACACTTTACATATATAGTAGCATCTTTTAGGAAGTGTTTTATAAAGTGTACCAGATTGAGTTTACGGTGTCCAGTCTTAGGAAAACCTGCAGTATGTGGCTGATGTTTGCAGCAAATAGCTAAACAGGCTGTTGGAAGTTGGCTGTAAAAAATCTCTGGACATGTGATGAGATTGAAACGATGCAGTCCGCTCTAACAGGCTGCTTTGAGAGTGTACAAGGCAATTTTTGGTTACACATATAGAGTAAATGACAAGTTCATTAGCTAGGCTACTGGGTAAGCTCGAGCGTGCTGTGCAGTCCCATGTTTACGTGGCCCACAAACTTTACTGACTAGGCTACAAAGTGGTAGCTAACAAACGTATGGCAAGCTAGTTATTAATGAAGTAAGGGAAACATGACTATATGAATTTCCAAAGCAGGGAAATTTGTGTTTCCATACTCTATATCCTGTCCTGATAAAGTTTTATCACAAGTACACGTGTGTGTCCTCGATGGAAAGTCACTCGGTCGTTGGCAGGCTCCAGCTGCGGTGTTCTCGTGTTATTTTCTCTCCGTATGTTTAACTGTGCAGTGGTTATATGACTGCATTGCACTGCACTTTAGTTTGCTCGGTCTCCTGAGTGTTTCCACGTACTCGCGTGTCTCTGATTCTCAAAAGATCATCGGTCATCCGCGCACACTGAGTAATCCAGCTAGTGAAACCCGTCAGACGGACTGTGCCTCGgccgatgtgtgtagtgcagcaggcggaGAGATCCGCACGCATGcgttatagttacagcattgagGTGCGTCACACAATCGTGAACtgcattacatttaaacatacacGCCAGTGGAAAACTtctgttttgcaaaagtcagtAAGGAGattgtttcatttataaatgtaagcGTAGCTACTTGTTACCTCGGCTTGTgtagggttgcagtggagaaGAGCAGGTTTGTTTCACTTCGGGAAAGCTCTTCTCTACAGCTGTTTTCATTGTCTAAGACTGATGGTGGCTTATTTTCACTCAGCTAGGGCTGTCTCGAGACCAGAGGTATTCAGACTTCTTCACCATAAGCCCACTTCCCAGTTTTTTTTGAGAACTCGCCCCGTCCCCAGGCccaaaaataaattcagtgaaCAGGAAGGTAAATGCAGTGAACAGTGAGAAACATAACCGTACATTTCAGTATAATCCTTTTGCAAATCTCTGGTCTGATGTTGCTCCTGAAAGCGGAATGGTTTGTGACCATCATGGGAGAGTAAAGTTTTATAATTCtcatcagcactttgtaaagtcttaaattttacactttattgtaggcctacttttttttttgagttaaacttttcagccttttttctcttttgggcaaaaagaaaagagatttTGACTAAAATATTCCACTGGCCTCCCTcttatagttaactgatgttgtATACTTATTTAACAATCGTTATGTCAGACACACATTGATAGACTTTATTTAACCTTCATAATAAACTAAAAGCGAGTGTGAGAAATGAGAAAGCAGGAGCGCCGCCTCAGCGTATGTTTTCCAGctcaactgtcagtcattctgGATTCACATGCTGATTGTctcatctgctgttttaatTAGAGGCAAAAAAGAAGACGTACTTTATTTGGGCatacttttgtgttttgttgttaaaatgcgCGGGTCCTGTGTGAAATGGCAGGCCTTAAACAGTcaattaaatctttattttttggtattttcatCTCCCCGTGAACACCTGCTAGTCAGTGTTTGCTACTGTGTTGGTTGCTGTCGTGTACTACTAATAACGAACTCCTCACACTGAGACTTgcatttaagatgttttatcagattACTTGCCATTTTCACAGAGTACAGTTTGCAGTTGCTTTATTTGctatcattaatcatgaaataagTCCAGATCTGTCATTTCGTGTCACATAGGCTTACATGGCATAGTATCACACTGTATTGGATGTTGGTATCGGAGCAAGTGTGAGTAAATGAGCTCAGTATCGGACCTGGACCAGACTCTGTTTTCAGTTGTGTAGTTGTGAGATTTGTTTGGTGGCTGAAAATGATAAGCACAATTAGCTGAGAAAAAGCTGCACAGTCAGATGACGGTATTAGTAGCACTATAGATTTTATCGATTTTATTGATCTGAGTGCTGATTGGTTTAATTGGAAAAGTGCCGTCTGAtggctaaataaatgttttggtATTTGCTGGTATTTTTGGGTTTGATTTTTAAGAGTGAACGACCAcaggttgtttttattttcctgtgcTTCCTATATTTTTTCCTGTAATGACGTAAAATgcacatgacatttttttctgtctggccacgccccttcTTTTCCCACCTCAGCGTCGCAGCAGCAGTACCCTGATCATACACATTGGCTTCATCCGACATGCCTCCAAAGCCACGGCCGATACGGTCGTCAGTCAGCGATGGTTAGGAGGAACCAcaggaaaatgacattttgcaCACAATCTCACAAGCCTAGCGTTCACCTTACGCCAGTACAGTAGCAAAAAACCACCGGAACCTGGTTACAAGTCAGCTGTAGCTGCTAGTTTCTACAATTAGCATTtagttttagtcttttttttaattaattgccTATTAACAAGATATGCAATGTTTACAAAAGTGGAGATGTAATGAGTATTAGCTGTAAACGTAACGAGTTATTGGCTGTAACTGAGCTCGTTATGAAATGATATAAACTACACATGCATGtgctctgttctgtttttttctttaaatatctgttcATGTTTTGTGACTGAAGACGTTCAGCAGCACAGACATGGGAAGCGAAGACgcatcagagaaagatgttttgctGCTCTGCTCTGAGGACAAGCAGCAGGTTATTAAAGGTTATATAGTATACAGAAGTATAGGCTAAAGATAGGTGAAAAGCTTAAAGCTGCAGACGCTACGCTTTCCCACAGACAGTTAAGTCGTCTGACTTAATAGCCTTCATGACAGTTGGAATCTATGATAGTTGGCAGTAGTGATACTATCGTCAGTCGTCCTGAGCCCAGCCAATAGTTCTGGGAAAAAACAAGCCTTTACTGATCTGTCAGTTCAGTAAGCAGAAACTTCAGGGGCGTATTTGTGCCAATTGCTGAAACCTTGAGTTCTGTCGCTAGCTAATAACTTTGTGAAAAAGTGAATAAGCAGTGGTGTATTAGGGGTTATCCAAATTCACAGAGCAACTCTAACATGAACTGATGTGTTAAATGAAACAGTAGCTGGCTATTAGTAGTCACACAGCACACACGATTTGAGTGAATGTCCTATTGCCTATAAACGTGGTGAAATTGAGAGCGCTGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU481315 True 3627 lncRNA 0.41 3 14378892 14385650

Neighbor

gene id symbol gene type direction distance location
tbc1d5 tbc1d5,LOC107592018,LOC107739565,LOC107748680 coding downstream 160722 14195955 ~ 14218170 (-)
dazl dazl coding downstream 183426 14172834 ~ 14195466 (-)
mpp6b mpp6,LOC108272353,LOC107592011 coding downstream 210296 14139944 ~ 14168596 (-)
ccdc126 ccdc126 coding downstream 304717 14067317 ~ 14074175 (-)
igf2bp3 igf2bp3,LOC108273237,LOC107748676,LOC107592016 coding downstream 332849 14016688 ~ 14046043 (-)
nudc nudc,LOC107689540,LOC107700719 coding upstream 55150 14440800 ~ 14452371 (-)
kdf1b LOC108273298 coding upstream 74742 14460392 ~ 14470818 (-)
tmem222b tmem222,tmem222b,LOC108273317,LOC103043641,LOC105903612,LOC107550652,LOC107754919 coding upstream 96287 14481937 ~ 14491263 (-)
trnat-ugu_14 NA coding upstream 157567 14543217 ~ 14543289 (-)
trnat-ugu_15 NA coding upstream 160456 14546106 ~ 14546178 (-)
G405681 NA non-coding downstream 49692 14256524 ~ 14329200 (-)
G405701 NA non-coding downstream 64058 14313739 ~ 14314834 (-)
LOC117596429 NA non-coding downstream 187137 14183486 ~ 14191755 (-)
G405575 NA non-coding downstream 301742 14076442 ~ 14077150 (-)
G405420 NA non-coding downstream 506464 13815898 ~ 13872428 (-)
G405900 NA non-coding upstream 232999 14618649 ~ 14686310 (-)
G405901 NA non-coding upstream 233688 14619338 ~ 14654751 (-)
G405906 NA non-coding upstream 259203 14644853 ~ 14966111 (-)
G405909 NA non-coding upstream 302373 14688023 ~ 14720906 (-)
G405917 NA non-coding upstream 314618 14700268 ~ 14704312 (-)
G405588 NA other downstream 259234 14114619 ~ 14119658 (-)
npy npy other downstream 295046 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 617335 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 820261 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 834387 13542003 ~ 13544505 (-)
tpbga LOC108272337 other upstream 89826 14475476 ~ 14479077 (-)
G405961 NA other upstream 581826 14967476 ~ 15013988 (-)

Expression


Co-expression Network