tpbga (LOC108272337)


Basic Information

Item Value
gene id tpbga
gene name LOC108272337
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14475476 ~ 14479077 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU481349
AGATGGTTCTCTTTCTCATGTTAATCAGCTCCTGCCTCTCACTGCTCTACACGTGGCTTGTGTGAGATGCAGAGGGAGCTGAGCGCGCGGAGAGGTCATTCCTGAGTTCCCCGGTTCTCCCTGAGAGCAGCAGGGTGCTAGCTCCCAGCTCCAGCAGTCCAGCTCCAGCAGTCCAGCTCCATCCCACCACATTTTCCCAATTATACCCTGTATCCCCGGAGTACAGGGTCAAAGTAACTTGGTTTAGGATGGGTCTAAGACCATTCTGCTGTTTCATTCAGACCTAGTAGGCATTTACTGCTTTGAGGGGAAGTAATTGTCATACTAAATCTGTTATATTGCATGCTGTGGCTGTATTTCTCCCTGAAGTTCATTGAATCAAAGAGCTGGGCCACAATCAGCAAGGATACGGAGCCCACTCTGCCTCTCTACCCACAGGGAGCTTGTGAAGAATGTGGTTGCCTTTCTCTACAAAGCATTCCAGTGCGAGGATAACCTCCTCTAAGCTTACCACGGAGCCACCGAGAAATGCACTTCCTTTGTGCCAGataaacagaatgaaagaatgaaaagggGGATCTTTCGAGAAAGGAGACCAGCTGTGGAAATCTCTGGTCCTCTTCTCCTTCCTTTTTTCGGAAGAAactttactgtgtttttattcctctcatttTTATTGTCAGAATGATGAAAACCAGCCCTGCGAGAGGGTTGCTGAAGACAGCAGTGCGCCTGTTGGCTGTGTGAAGGCACAGCCTGGCTCAGCTCCTAGTAACTTCAGCAGCTTTTTGTGTTTAGGAGATTTTTACAGTGATAAGATGCAGATGAACCTGGGATGGATTTGGTTCAGATGTTTTATGTGTATGGGACAGAATTCGCCAAACGTTCTTTGTGTACTAGAACCCAAAGGCATGGGCTTGGATGTCATGGTTTTGTacttattttataaaaacaaatccagTGGATATGCATAGTCAAGACATTTTAAACCTGAAACTATTACTTGGTCTGCTCTAAACCACTTTGGTCATGTaacttcatttaaaagtagGATTAGTCTGTATCTCGGAAACTGACCTGGCTCCATAAACCATTACAGTACATTCACTAGTACAACATTTGCTGATTTTgactttaaatattcatttgtgCCTGAAGCTCCTCATTGTCATAAAAGCTTTTGTCATCCAAAGTGGTTTAACGTTTCTCTGTTCTTGACGACTTATTTAACAAGTACATGCCATGCTGTCAAACTGCAGTTCATTAACCAAATATGAAAGTCTCCAAAAGAGAAATTATGACttgaaatatggaaatatggaaattttgaaatccaaaatatttttggaGTCTCTATGTATGTGATGCATTGAATGAACAAATTGGATGGCTTCCACAAAGGCAGTTTCATCTGCAttcttaataaaatgttgtaataAGTGTCCC
>XM_026927974.2
gaacgTGAGAGAAGGGAAGAGTAGAAGAGAGTAGTTCTTTGTGATTACTTGTAGTTTATTAGGACTACAGAGCCATCAGGTGCCAATAATAATATTGTGCGAAATATTTGAATCCATTTGAATCATTGTACCCCAGagatttgcttttaaaatgtgtagCTAGTCCAGTCCAGGCTTCAGCAACAgactgaggaggaggaagagcagcTGTCTGCTGTGCTCAGAAATCATGGTACTGATCTGAGTCCTGAACAGCACGCGGATTAAAGCCTGCACTTTGAGTTAATTTGCATTTAGTTGCTGTGATTTGTGGATTTTGGACTTGTGTTTCTCTCAGACATGAGTAggtccccctcctcctcctcctcctcctcctctcccctcCTCCAAGCGTGGGTCCAGCGCTGCTGCTTTCATTGCATTGTTCCAGAGGAGTTCAGATGGTTCTCTTTCTCATGTTAATCAGCTCCTGCCTCTCACTGCTCTACACGTGGCTTGTGTGAGATGCAGAGGGAGCTGAGCGCGCGGAGAGGTCATTCCTGAGTTCCCCGGTTCTCCCTGAGAGCAGCAGGGTGCTAGCTCCCAGCTCCAGCAGTCCAGCTCCAGCAGACCCCCGCGTTTGGAGAGGCTGTGCGTGTTTGGAGGAACGCGTGCACTCCGGGACCCGCAACTTTTCCTggatttgttttactttttaaaaggAAGTCATAGGCAGCCGGTCCCGAGcgagtttttttaaacaagcatgTTTGTTCATTCTGTTTAAGCCACTCGATCGAGGTGAACTGAGAGAAGGGCATTTACCTGCTTAATTTTCAGACTTTCCGACATGTTGGTCTTCGTGCTGCGCGTCGCGTTCGCGCTGCTGTGCGTCCACGCTACGCGCTCTGCGTTGTGTCCCGCTGGCTGCGAATGTTCCGAAGCTGCACACACtgtgaaatgtgtttctaaagacCTTCAGGACATACCGACCGGCATTCCTGCTTACACGAGGAATCTGTTCATCACGGGCAACCACATTAGACGAATTGGTCCAGAGTGTTTCAAGGGGCTGGACAATGTGACCACCTTATCACTCAGCAacaacagAATATCTGAGGTGGAGTCTCACACCTTCTCCAGCCTGCGTAACCTCAGATCACTGGACCTGAGCAGCAACCAGCTGGTGCTGATTCACCCAGAGGCCTTCACAATGCACAACCACACGCTGAGAGAGCTGAATTTCAGCCGAGCGCTCTATAACCACTCCTCAGTCACTAACCTGGCCACAGCTCTGCGCTGGAGCAGCCTGGACACGCTGCTTGGGCTGGACCTGTCCAGCAATGGCCTGATCTTCCTACCCCCTCACATGTTCTTTCACATGAGCAGTCTGCGCCGACTGCATCTGGCCAACAACTCCATAGTAGCTATTACCAATGAGACGTTGCTGGGTTTGGAGCACTTAGAAGAGCTAGATCTCAGCCATAACGCCCTTAAAACCTTCAACAAGGAAGGCTTGATGGAGTTGGAGCGCATTCCAAAAGCAAAGTTACACCTTGGGCAGAACCCATACACGTGTACCTGTGGAATTGAGTCGTTCATCACCTTGCTAAACACCTCGTGGGACCGTGTCGTAGATGTGGAGCATCTGGTCTGTGTGTTCCCTGTTGAACTGCGCAACATTTCTTTACTGCTTGTAAGGAAGATGGTGCTGGGATGCCATCACGTAGAGGAGAGCAACAACCTGGCTCTCCAAACATCCTATGTCTTCCTAGGCATAGTGCTGGGTTTTGTGGGCCTAATGTTCCTCTTTGTGCTGTATCTGAATCGGAAGGGTATCAAGAAGCGCATCTATGAAATGCGTGACACCTGCAGAGAGATGTGGGAGGGGTATCATTACCGATATGAGATTGACTCTGATCCCAGGTTGTCACAATTGTCCACCAGTGCAGATGTGTAATTTGGACTACTGGTAGTTTGACCCAAGTTCTTCCAACCCAGTGTCTTTATCTGAAATTGATTTCTAgcaaatttatacataaaggaATTTATGACAAACTCTACATGTGTTTTGTAAATCTATTGTTTTATGTTTTCAGGCACCATTAATACTAGCAACCTGCACACCCATTCTTTTTCATACATCCACCATCTGCTCCAGCTCCATCCCACCACATTTTCCCAATTATACCCTGTATCCCCGGAGTACAGGGTCAAAGTAACTTGGTTTAGGATGGGTCTAAGACCATTCTGCTGTTTCATTCAGACCTAGTAGGCATTTACTGCTTTGAGGGGAAGTAATTGTCATACTAAATCTGTTATATTGCATGCTGTGGCTGTATTTCTCCCTGAAGTTCATTGAATCAAAGAGCTGGGCCACAATCAGCAAGGATACGGAGCCCACTCTGCCTCTCTACCCACAGGGAGCTTGTGAAGAATGTGGTTGCCTTTCTCTACAAAGCATTCCAGTGCGAGGATAACCTCCTCTAAGCTTACCACGGAGCCACCGAGAAATGCACTTCCTTTGTGCCAGataaacagaatgaaagaatgaaaagggGGATCTTTCGAGAAAGGAGACCAGCTGTGGAAATCTCTGGTCCTCTTCTCCTTCCTTTTTTCGGAAGAAactttactgtgtttttattcctctcatttTTATTGTCAGAATGATGAAAACCAGCCCTGCGAGAGGGTTGCTGAAGACAGCAGTGCGCCTGTTGGCTGTGTGAAGGCACAGCCTGGCTCAGCTCCTAGTAACTTCAGCAGCTTTTTGTGTTTAGGAGATTTTTACAGTGATAAGATGCAGATGAACCTGGGATGGATTTGGTTCAGATGTTTTATGTGTATGGGACAGAATTCGCCAAACGTTCTTTGTGTACTAGAACCCAAAGGCATGGGCTTGGATGTCATGGTTTTGTacttattttataaaaacaaatccagTGGATATGCATAGTCAAGACATTTTAAACCTGAAACTATTACTTGGTCTGCTCTAAACCACTTTGGTCATGTaacttcatttaaaagtagGATTAGTCTGTATCTCGGAAACTGACCTGGCTCCATAAACCATTACAGTACATTCACTAGTACAACATTTGCTGATTTTgactttaaatattcatttgtgCCTGAAGCTCCTCATTGTCATAAAAGCTTTTGTCATCCAAAGTGGTTTAACGTTTCTCTGTTCTTGACGACTTATTTAACAAGTACATGCCATGCTGTCAAACTGCAGTTCATTAACCAAATATGAAAGTCTCCAAAAGAGAAATTATGACttgaaatatggaaatatggaaattttgaaatccaaaatatttttggaGTCTCTATGTATGTGATGCATTGAATGAACAAATTGGATGGCTTCCACAAAGGCAGTTTCATCTGCAttcttaataaaatgttgtaataAGTGTCCCTTTA

Function

NR:

description
PREDICTED: trophoblast glycoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU481349 False 1446 lncRNA 0.42 2 14475480 14478639
XM_026927974.2 True 3414 mRNA 0.46 2 14475476 14479077

Neighbor

gene id symbol gene type direction distance location
kdf1b LOC108273298 coding downstream 4658 14460392 ~ 14470818 (-)
nudc nudc,LOC107689540,LOC107700719 coding downstream 23105 14440800 ~ 14452371 (-)
arid1ab LOC108272722,LOC108415569 coding downstream 87010 14320865 ~ 14388466 (-)
tbc1d5 tbc1d5,LOC107592018,LOC107739565,LOC107748680 coding downstream 257306 14195955 ~ 14218170 (-)
dazl dazl coding downstream 280010 14172834 ~ 14195466 (-)
tmem222b tmem222,tmem222b,LOC108273317,LOC103043641,LOC105903612,LOC107550652,LOC107754919 coding upstream 2860 14481937 ~ 14491263 (-)
trnat-ugu_14 NA coding upstream 64140 14543217 ~ 14543289 (-)
trnat-ugu_15 NA coding upstream 67029 14546106 ~ 14546178 (-)
epb41a epb41,LOC107712606 coding upstream 72967 14552044 ~ 14586242 (-)
zbtb22b zbtb22b,LOC108272665,LOC101073910,LOC103355711,LOC104955937,LOC101155366 coding upstream 119418 14598495 ~ 14614761 (-)
G405707 NA non-coding downstream 89826 14378892 ~ 14385650 (-)
G405681 NA non-coding downstream 146276 14256524 ~ 14329200 (-)
G405701 NA non-coding downstream 160642 14313739 ~ 14314834 (-)
LOC117596429 NA non-coding downstream 283721 14183486 ~ 14191755 (-)
G405575 NA non-coding downstream 398326 14076442 ~ 14077150 (-)
G405900 NA non-coding upstream 139572 14618649 ~ 14686310 (-)
G405901 NA non-coding upstream 140261 14619338 ~ 14654751 (-)
G405906 NA non-coding upstream 165776 14644853 ~ 14966111 (-)
G405909 NA non-coding upstream 208946 14688023 ~ 14720906 (-)
G405917 NA non-coding upstream 221191 14700268 ~ 14704312 (-)
G405588 NA other downstream 355818 14114619 ~ 14119658 (-)
npy npy other downstream 391630 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 713919 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 916845 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 930971 13542003 ~ 13544505 (-)
G405961 NA other upstream 488399 14967476 ~ 15013988 (-)

Expression


Co-expression Network