G405900


Basic Information

Item Value
gene id G405900
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14618649 ~ 14686310 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU481546
gttgttcttccttggaccacttttggtaggtactaaccactgcacaccgggaacaccccacaaggcctgctgctttaaagatgctctgacccagtcgtctagacatcacaatatggccgttgtcaaagtcgctcagatccttacgcttgcccatttttcctgcttccaacacatcaacttcgagaactgactgttcacttgctgcctaatatatccctcacctttacaggtgccactgtaacgagataatcagtgttattcacttcatctgtcagtgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU481546 True 278 lncRNA 0.47 2 14618649 14686310

Neighbor

gene id symbol gene type direction distance location
zbtb22b zbtb22b,LOC108272665,LOC101073910,LOC103355711,LOC104955937,LOC101155366 coding downstream 3888 14598495 ~ 14614761 (-)
epb41a epb41,LOC107712606 coding downstream 32407 14552044 ~ 14586242 (-)
trnat-ugu_15 NA coding downstream 72471 14546106 ~ 14546178 (-)
trnat-ugu_14 NA coding downstream 75360 14543217 ~ 14543289 (-)
tmem222b tmem222,tmem222b,LOC108273317,LOC103043641,LOC105903612,LOC107550652,LOC107754919 coding downstream 127386 14481937 ~ 14491263 (-)
gnb3b gnb3b,LOC108433753,LOC107666347,LOC107665150,LOC107753988,LOC107727720,LOC107563025 coding upstream 173944 14860254 ~ 14867598 (-)
si:ch211-264f5.6 NA coding upstream 211300 14897610 ~ 14917917 (-)
cica LOC108272903,LOC108433746 coding upstream 244833 14931143 ~ 14964811 (-)
LOC113534955 LOC108272455,LOC108433744,LOC107753802 coding upstream 387359 15073669 ~ 15136790 (-)
atp1a3a LOC108433742,LOC108272709,LOC102313318,LOC102779181,LOC103362864,LOC100707930 coding upstream 478878 15165188 ~ 15206951 (-)
G405707 NA non-coding downstream 232999 14378892 ~ 14385650 (-)
G405681 NA non-coding downstream 289449 14256524 ~ 14329200 (-)
G405701 NA non-coding downstream 303815 14313739 ~ 14314834 (-)
LOC117596429 NA non-coding downstream 426894 14183486 ~ 14191755 (-)
G405575 NA non-coding downstream 541499 14076442 ~ 14077150 (-)
G405909 NA non-coding upstream 1713 14688023 ~ 14720906 (-)
G405917 NA non-coding upstream 13958 14700268 ~ 14704312 (-)
G405929 NA non-coding upstream 60538 14746848 ~ 14748447 (-)
G405930 LOC108272765,LOC107694750,LOC107751686,LOC107577321,LOC107694162 non-coding upstream 63444 14749754 ~ 14753292 (-)
G405924 LOC108272765 non-coding upstream 118871 14805181 ~ 14806859 (-)
tpbga LOC108272337 other downstream 139572 14475476 ~ 14479077 (-)
G405588 NA other downstream 498991 14114619 ~ 14119658 (-)
npy npy other downstream 534803 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 857092 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 1060018 13556156 ~ 13558631 (-)
G405961 NA other upstream 281166 14967476 ~ 15013988 (-)

Expression


Co-expression Network