G405924 (LOC108272765)


Basic Information

Item Value
gene id G405924
gene name LOC108272765
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14805181 ~ 14806859 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU481572
ATCTTTGTAGTCTGATTGACTGAGACGGAGGTCGTGGCATGTGCGGGCCGGGCTTTCCTTAGTTCCAAGTGGGAATCGCATGCTCTCAATCTCAATATGAAGGGAGTTCAGAGAGCCCAAAATCTCCTCCATGTCTTCGTTGCCAGTCAGAAATCCGGTACCTGTGGCATCGGCTGGGGAAGCCTCGTCATCCTGAGAGAGCATCTTACTGCCATCAATGGAACGCTTGGACTTTTTCGGGATTGTATAGGGCAGGGGCTGGATGACATCACCAGGAGGTCCCTGGGGGTCCTGGAGGCCCTTGTACACCTTTCTCTCCTTTGGGACCAGCTCCGCCCTGTAACACAGCAACAGCTTCATGACATTACCTGATGTATCACAACTTTGAAGATGTTTGTAGTATTTGTAACTGTTGATGTTATATCTGCCATAACGGTTAATAGCTACTCACCATAGCACCCTTTGCTCCCTTAACACCTCTTGGGCCCtgtgaaaatgtgcaaaattgGAAAATTTAACCTTACACCAATTTATGTATCGACTATAAACAAAGTTTTGCTAACAGATACTCACAGGCAAACCAGGAGGACCAGTAGGGCCCAGAGGGCCAGTTCCACCAGACATACCCTGGAACGCAGCACAGCGTATGAATTGCAACATGTGCATACTGAGTAAAACTTATACTCCTCTGTATTAGATGTATGGTCAGGTCTATGTATTCAAATAAAACTAGTCACATTAGGCTGTATTCAGCGGTGGCAATGGAATATGGGATTTACTCCAAaagttatattaatatttacatggggaaagttcctcgtattcagaatTGATTTATGCacgtatttttattttctgagcaGCCCATgaagattatgcaaatcacctgcaTTTGGTTCCTGCCTACATCATGCAAGAAAACATTGAGGTAAATGAGGTATATGAGGCCGTATAAATGACACTTACAGTTTCTCCCTTGGGCCCAGAAGATCCTTGAGGGCCAGGCAATCCTCTGTCTCCCTTTTCTCCCTGCTCACCTGGAGGTCCAATCAGACCAATCATACCTGAATGTCCCTTTTCACCCTTATCACCAAATTCACCACGCAAACCTGGCAAACCTAAAGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU481572 True 1127 lncRNA 0.45 2 14805181 14806859

Neighbor

gene id symbol gene type direction distance location
daxx daxx coding downstream 135141 14652344 ~ 14670040 (-)
ctdp1 ctdp1,LOC107552301,LOC107550068 coding downstream 167848 14622681 ~ 14637333 (-)
zbtb22b zbtb22b,LOC108272665,LOC101073910,LOC103355711,LOC104955937,LOC101155366 coding downstream 190420 14598495 ~ 14614761 (-)
epb41a epb41,LOC107712606 coding downstream 218939 14552044 ~ 14586242 (-)
trnat-ugu_15 NA coding downstream 259003 14546106 ~ 14546178 (-)
gnb3b gnb3b,LOC108433753,LOC107666347,LOC107665150,LOC107753988,LOC107727720,LOC107563025 coding upstream 53395 14860254 ~ 14867598 (-)
si:ch211-264f5.6 NA coding upstream 90751 14897610 ~ 14917917 (-)
cica LOC108272903,LOC108433746 coding upstream 124284 14931143 ~ 14964811 (-)
LOC113534955 LOC108272455,LOC108433744,LOC107753802 coding upstream 266810 15073669 ~ 15136790 (-)
atp1a3a LOC108433742,LOC108272709,LOC102313318,LOC102779181,LOC103362864,LOC100707930 coding upstream 358329 15165188 ~ 15206951 (-)
G405930 LOC108272765,LOC107694750,LOC107751686,LOC107577321,LOC107694162 non-coding downstream 51889 14749754 ~ 14753292 (-)
G405929 NA non-coding downstream 56734 14746848 ~ 14748447 (-)
G405909 NA non-coding downstream 84275 14688023 ~ 14720906 (-)
G405917 NA non-coding downstream 100869 14700268 ~ 14704312 (-)
G405900 NA non-coding downstream 118871 14618649 ~ 14686310 (-)
G405967 NA non-coding upstream 211827 15018686 ~ 15019240 (-)
G405976 NA non-coding upstream 241862 15048721 ~ 15049178 (-)
G405981 NA non-coding upstream 244830 15051689 ~ 15051897 (-)
G405982 NA non-coding upstream 245096 15051955 ~ 15052188 (-)
G405983 NA non-coding upstream 245728 15052587 ~ 15052844 (-)
tpbga LOC108272337 other downstream 326104 14475476 ~ 14479077 (-)
G405588 NA other downstream 685523 14114619 ~ 14119658 (-)
npy npy other downstream 721335 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 1043624 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 1246550 13556156 ~ 13558631 (-)
G405961 NA other upstream 160617 14967476 ~ 15013988 (-)

Expression


Co-expression Network