G405930 (LOC108272765,LOC107694750,LOC107751686,LOC107577321,LOC107694162)


Basic Information

Item Value
gene id G405930
gene name LOC108272765,LOC107694750,LOC107751686,LOC107577321,LOC107694162
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14749754 ~ 14753292 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU481579
CAAATATATGTAACTTGTGGTTGTGGTCTGAATGGTTTGGTTACTGACTTGCCATCAGCCAGGTTGACGCCTTTGAATAACGGGTAGTTCTCTGGGGTGGGCAAGCGGCTCTGGTCCTCATACAGGAAGACGGGTGAGCGGCCCAGCTCCAGCCCCAGCTGCTGCACCCCCTGCTCACTGTAGATGGACAACAGGAAGGCTTGAAGCCCAGCCTTGGCCTTCACTGTGGTCATGATGGAGAAGTTCTCTGGGAAACACCTGGGAAGAGTTGCTTGGTTGGAGCAGAGATTTGGGCCTTCTTACTGATGCGGTAGGCATGATCAGTACCAGAACGCTGCGAGACACAAAAGCCTGGAACCTTCTGTACACcttcagggagggagggaagctGGAGAACCCGCAAAACATCAACAGGATCTATCAACAcagagaaggaaagaatgaataaaattcacTCCAATCACAGGTGACATTAAAAGAACGCATGGCAAAGACCTTTGGGCAGGACCATGATGCTTCAAACGCACTTCACGCCACCTGGACCATTAGGATAAAGTTTTGATGCTTTACTGATGCTAAACCCTGTGTAGAGGTGTGAAGGAATCCGcgatctgtatctgtatctgtttagtgcccAAAATGTTCGtttctgttttcatattcaAATTTAAAGCAAAAGTGGAAATACCAGAAATTGctggaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU481579 True 706 lncRNA 0.48 2 14749754 14753292

Neighbor

gene id symbol gene type direction distance location
daxx daxx coding downstream 79714 14652344 ~ 14670040 (-)
ctdp1 ctdp1,LOC107552301,LOC107550068 coding downstream 112421 14622681 ~ 14637333 (-)
zbtb22b zbtb22b,LOC108272665,LOC101073910,LOC103355711,LOC104955937,LOC101155366 coding downstream 134993 14598495 ~ 14614761 (-)
epb41a epb41,LOC107712606 coding downstream 163512 14552044 ~ 14586242 (-)
trnat-ugu_15 NA coding downstream 203576 14546106 ~ 14546178 (-)
gnb3b gnb3b,LOC108433753,LOC107666347,LOC107665150,LOC107753988,LOC107727720,LOC107563025 coding upstream 106962 14860254 ~ 14867598 (-)
si:ch211-264f5.6 NA coding upstream 144318 14897610 ~ 14917917 (-)
cica LOC108272903,LOC108433746 coding upstream 177851 14931143 ~ 14964811 (-)
LOC113534955 LOC108272455,LOC108433744,LOC107753802 coding upstream 320377 15073669 ~ 15136790 (-)
atp1a3a LOC108433742,LOC108272709,LOC102313318,LOC102779181,LOC103362864,LOC100707930 coding upstream 411896 15165188 ~ 15206951 (-)
G405929 NA non-coding downstream 1307 14746848 ~ 14748447 (-)
G405909 NA non-coding downstream 28848 14688023 ~ 14720906 (-)
G405917 NA non-coding downstream 45442 14700268 ~ 14704312 (-)
G405900 NA non-coding downstream 63444 14618649 ~ 14686310 (-)
G405901 NA non-coding downstream 95003 14619338 ~ 14654751 (-)
G405924 LOC108272765 non-coding upstream 51889 14805181 ~ 14806859 (-)
G405967 NA non-coding upstream 265394 15018686 ~ 15019240 (-)
G405976 NA non-coding upstream 295429 15048721 ~ 15049178 (-)
G405981 NA non-coding upstream 298397 15051689 ~ 15051897 (-)
G405982 NA non-coding upstream 298663 15051955 ~ 15052188 (-)
tpbga LOC108272337 other downstream 270677 14475476 ~ 14479077 (-)
G405588 NA other downstream 630096 14114619 ~ 14119658 (-)
npy npy other downstream 665908 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 988197 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 1191123 13556156 ~ 13558631 (-)
G405961 NA other upstream 214184 14967476 ~ 15013988 (-)

Expression


Co-expression Network