G405976


Basic Information

Item Value
gene id G405976
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 15048721 ~ 15049178 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU481636
ctctgactctctgatcagcaaggtgtttccacccacagaactgtctctcactcagtgtttttgtttttcgcaccattctgtgtaaactctagagactgctgtgtgtgaaaatcccaggagatcagcagtttctgaaaacctcaaaccagcccatctgacaccaacatccatgccacagttaaagtcacagagatcacactttttcttcattctgatgtttgatgtgaacattaactgaagctcttgacctgcatctgcaagagtttatgcactgtgctgtgACATCCAACAAATGCCTCAATGTGACCAAATAAACAAAGACTTGGCATCTTCTCTGCATGGTTCTGCCTCTGGTTTTGGCCGTGACCAGCAGAGCCGACCCGAGACCGAGTTCACTTCGGCCTTAACGGAGGCAGAGCATCTGTGGTCCTGAGGAATTTACCTTTCAGAGACCCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU481636 True 458 lncRNA 0.47 1 15048721 15049178

Neighbor

gene id symbol gene type direction distance location
cica LOC108272903,LOC108433746 coding downstream 83910 14931143 ~ 14964811 (-)
si:ch211-264f5.6 NA coding downstream 130804 14897610 ~ 14917917 (-)
gnb3b gnb3b,LOC108433753,LOC107666347,LOC107665150,LOC107753988,LOC107727720,LOC107563025 coding downstream 181123 14860254 ~ 14867598 (-)
daxx daxx coding downstream 378681 14652344 ~ 14670040 (-)
ctdp1 ctdp1,LOC107552301,LOC107550068 coding downstream 411388 14622681 ~ 14637333 (-)
LOC113534955 LOC108272455,LOC108433744,LOC107753802 coding upstream 24491 15073669 ~ 15136790 (-)
atp1a3a LOC108433742,LOC108272709,LOC102313318,LOC102779181,LOC103362864,LOC100707930 coding upstream 116010 15165188 ~ 15206951 (-)
G405967 NA non-coding downstream 29481 15018686 ~ 15019240 (-)
G405906 NA non-coding downstream 82610 14644853 ~ 14966111 (-)
G405924 LOC108272765 non-coding downstream 241862 14805181 ~ 14806859 (-)
G405930 LOC108272765,LOC107694750,LOC107751686,LOC107577321,LOC107694162 non-coding downstream 295429 14749754 ~ 14753292 (-)
G405929 NA non-coding downstream 300274 14746848 ~ 14748447 (-)
G405981 NA non-coding upstream 2511 15051689 ~ 15051897 (-)
G405982 NA non-coding upstream 2777 15051955 ~ 15052188 (-)
G405983 NA non-coding upstream 3409 15052587 ~ 15052844 (-)
G406054 NA non-coding upstream 158023 15207201 ~ 15207531 (-)
G406078 NA non-coding upstream 207624 15256802 ~ 15257054 (-)
G405961 NA other downstream 34733 14967476 ~ 15013988 (-)
tpbga LOC108272337 other downstream 569644 14475476 ~ 14479077 (-)
G405588 NA other downstream 929063 14114619 ~ 14119658 (-)
npy npy other downstream 964875 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 1287164 13759761 ~ 13761557 (-)

Expression


Co-expression Network