tmem100a (tmem100)


Basic Information

Item Value
gene id tmem100a
gene name tmem100
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 2397416 ~ 2402161 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910059.2
tctctctctctctctgtgcaggaGGGTCACTCAGCGCGCGCAGTCGAGGCGACTCTGACTTTGTCCGGATTATTACAatcatcttcttctttctcAGCAGCATTAATCACTTCtctgattaaaataataataataataataaaaataataagtcCACATTTATTCCAACTTCACGAGTCGGGATGGACAATGAGCGCAAGGTGTAGCCTATTGAAGGCGAAACTGTGGAAACTGCGATGCCCGAAGATACTCTGAAAGACACCATGACGGTCCCCGAGTGTCCTTCTCTCACCGTTAaagccaacaacaacaacaaatacgATCCACCACCTTCAGTATCCATCCCTCTGGTGAACGACGGTCCTCTGACGGCAGCGACGGGCGGCACGGAGCTCTCGTGCTTCCGCTGTACTCTTCCCTTTGGCGTGGTGGTGCTGATTGCAGGCATCGTGGTCACAGCCGTCGCCTATAGTCTTAACTCTCATGGCTCCACCATCTCCCACTTCGGCCTGGCACTGCTGTCGGCCGGCGTCGCTCTGCTCGGCCTCAGCGCCGCCTGCTGGAAGCTCCgcagtgagaaaaagaaagaggagcGGAGACGGGAGAGCCAGGCTGCACTAGTCACCAACCACAGGATCGTCTAAAGACTGGTGGATGTTTAGAACCTCTTGgaattttcagaaatgtgaCTGCTGGTCTAGAAAAACTCTGGAAAAGACAGAAGCAGAAACATCTTCACATCTTCAGCCTCTTTGGATTTCTTGCTTAACTTACAACATCTTCCCAAAGCAACTCACTAAAACCACAAAGGATTGGATATTGGAGTTTCACTAGTGGTCTTTGCCTCATGTCTTCAGACTATTCCGAGTGACAGGAATGTGTGCCTGGTACTCTGGATAAGTCTGACCTCAATAAAGGAATTATTCGGGTCAGATTTATCCAGAGTACCAGGAACATCATCCCCTGATGTCTACAGACTCAGAGAGTCAGGAAAAGGTTCAAAAACCACAGGAGCATCTTTACCTGGCTGATGTCTTAGGATTCAGACAAGCACTCTATAAATTCAGTCTTCTTGCTTAATATCCAACGTGTTTCCAATTGCAACTGCACCCTAAGGAAACTCATAAAACCAGAGGACTCCTTGGACCTTTTGGATTTCAAACCTTCTGacttttcactagtggtctttACGTCGTGTCTTCTATTCCAAGAATCAGGAATGGGTTCCCTTAAAAGGGTCAGACTTATCCAGAGTACCAGAAGCACCTTCCCCTGATGATTTTAGATTTCTCAAAGTGTCTGGAATATCTTCTTCCAATGATTACAAACCCAAGGCATCAGGAAAAAGACTCTTGAAAACCACAGGAGCATCTTCTCACTGATGTCTTAGGATTCAAACTCTCCAGAATCTCCAGACTTACAGCTTCTTACCAGGTGCAACTTCTTCACAAAACCCACAGAACAGTTGGAACTCAGACTCCTCAGTctttttggatttggatttcTCACTTGTCTTCAGACTAGTCAGAGTATTAGGAATTGGTTCCCTTAATGTGGTCAGACTCTCCGGAGTAACAGGAGCATGTTCCTATGATGACTTCAGGCCAGAGAGTCAGGAAAAGACTCAAAAATCACAGGAGCATGAAACATGAGCCCaaattttctgaattttttttcatacatccTATACCATCCTTGCCTGGATTTTTTATGCCAAGGGGAAACTATGAACCCTTGAGGGGAACCAAGCCTTAAAAGGGGGACACACATCATCCTCTGGACAATACTGGATAATGGGATTACACTAGGAACTCAGAGTCTTCAGCTTTGAACTTTTTGCATTTGGACTTGTTGCTAATGGACACTGTTTTTAAGGTGATCAACTCTGAATAAAGATTgtgttctttttcattaaagtaATCATGTGCACCAGTGGAGATTGATAGGTTCAGCGTAGATCCTGTAGCCTGCTCAATGATCCATAACAAGCCACAGGAAGATTACTCATGACGTTCAGAAAGAAACACCTCATTTCACTTGGGCTCTGTGCAGCGGAACTGTGTTTTATCCCTGTTTCCCTGATGGGCATGAAATATCCAGACAAGAACAAAACCAGCAGGGAAGGGAGGGAGGTGAAGAAGGCATTTCTGGACATGCACAGCTGTTTTCAGATGATCAGGACTTGAAGGATGCTGACCTGAAGGTCCCTCATCACAAACCTTTCTTAAAGTGACTGACTGCCATCCTTTTTGCTTTGAAGTTGACCTGCAGGATTTTcaggatttttatttcttccttccCCCCACTCTTCTTCCCTCttctcaccttctctctctctctttctctctctctctctctctctcttgctctctcgtATTGCAGATTGTTTGCATCTGTTTAGCCAGGCAGCGAGCCAAACTGTGAGCGTCAGGATGAAGACAAATAGCTGCACTACAATcccagagagaggaagaaacacATTAATTCatctctccttcctcctctctttctttctttctttctttcttcctcttgttctctttttctctccttcagaTTGGATATCTCTCGCActtttttcagtaaaaataCATGGTACTTATAAACACTATCGTATGATGGTATGTAAACTTCAGTATGAGTGACTGAAGGACTTCATTTGCTACATTTATCATTAAGACTCTATAACCATGTGACTTGGGGCACAAAACTAGTGCCCTCCAGAGCCGTAGTGACTCATAGGACATGACAATAACTTATGAGGATGAATATAACTATAGATAACTCATGCTATATGATATCAGTATTGTATTTGTAACTGTCTTACTGCACTTTGCTGTATGGATATAAACAGTGTTTGGTTGATGTGGGGTTCCGCTGAACCTCCAAACAGTGTTTATCTTctgaacaattaaaaaaaattaaataaaattaatcagttGACACGA

Function

symbol description
tmem100 Involved in BMP signaling pathway. Located in several cellular components, including endoplasmic reticulum; perikaryon; and perinuclear region of cytoplasm.

NR:

description
transmembrane protein 100-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910059.2 True 2948 mRNA 0.44 2 2397416 2402161

Neighbor

gene id symbol gene type direction distance location
tmem220 tmem220 coding downstream 385424 2008006 ~ 2011992 (-)
mrps7 mrps7,LOC108262546,LOC107724659,LOC107579769 coding downstream 390139 2003622 ~ 2007277 (-)
jmjd8 jmjd8 coding downstream 414860 1979258 ~ 1982556 (-)
LOC117596454 LOC108273013 coding downstream 426984 1962730 ~ 1970432 (-)
hspbp1 hspbp1,LOC107550267 coding downstream 446320 1934506 ~ 1951096 (-)
cbx2 cbx2 coding upstream 96818 2498979 ~ 2507141 (-)
LOC113523971 LOC108272994 coding upstream 115630 2517791 ~ 2524179 (-)
LOC113523961 LOC108272987,LOC106591917 coding upstream 511873 2914034 ~ 3079229 (-)
si:ch211-108d22.2 LOC108272973 coding upstream 677073 3079234 ~ 3112252 (-)
LOC113525116 LOC100526730,LOC108272815,LOC108280069,LOC108279574,LOC108280065 coding upstream 716174 3118335 ~ 3295290 (-)
G399016 LOC102218968 non-coding downstream 49604 2262604 ~ 2347812 (-)
G399054 hlf,LOC102226672,LOC103365050,LOC103481883,LOC107089311 non-coding downstream 52374 2343971 ~ 2345042 (-)
trnad-guc_31 NA non-coding downstream 149185 2248160 ~ 2248231 (-)
G398953 NA non-coding downstream 356493 2040301 ~ 2040923 (-)
G398935 NA non-coding downstream 364784 2031168 ~ 2032632 (-)
G399118 NA non-coding upstream 144303 2546464 ~ 2547110 (-)
G399245 NA non-coding upstream 306796 2708957 ~ 2709168 (-)
G399252 NA non-coding upstream 321160 2723321 ~ 2723543 (-)
G399300 NA non-coding upstream 400252 2802413 ~ 2802629 (-)
G399316 NA non-coding upstream 423671 2825832 ~ 2826047 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other downstream 19785 2354909 ~ 2377631 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 516358 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 805682 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 881102 1462119 ~ 1516314 (-)
LOC117596459 NA other downstream 935346 1457832 ~ 1462070 (-)
G399490 nup85,LOC106601803 other upstream 559552 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 615129 3017290 ~ 3295273 (-)
LOC113525117 NA other upstream 745138 3147299 ~ 3196563 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other upstream 821904 3224065 ~ 3234324 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 1718236 4120397 ~ 4132922 (-)

Expression


Co-expression Network