LOC113523971 (LOC108272994)


Basic Information

Item Value
gene id LOC113523971
gene name LOC108272994
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 2517791 ~ 2524179 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910075.2
TTCCCAGACCtgacagagggagagactgagagaagctGCTCAGGATTTCAGGAGGAGAAATCTGAACAACAAAAGTCAAGATCATCCCTAAGCTGGTCACAGAGCTGATCTGTGTGTAAGAGACGACTGAACAGATACAGTCATgtggaatttgtgtgtgtgtctgtgtgtgtttgcgtgctCTTTGCAGGCCATGCCTCTCAGCAAAAATAACTGCTTAGATCGCAGCAAGGTGCTGCTGGTCTCCTTTGATGGCTTCAGGTGGGATTATGACAGGGATGTGGACACACCTCACCTGGACCAAATGGCCGTAGATGGGGTGAAAGCGCCTTACGTGACACCGGCCTTCTTTACCATGACCAGTCCTACTCATTTCACACTACTTACAgGTAAATATATTGAGAATCATGGTGTGATACACAACATGTGGTTCAACACCAGCACGTCTGAGAAGAAGCCGTACTACCAGACGCAGTTTGTGAACGAGTGGTGGGATAACGGCAGCCTTCCCATCTGGATCAGTGCTCAAAGACAgggTCTCCGAGCTGGCTCACTTCACTTCCCCGGCACAGCTTCAACCTACGATGGTGAGACAGCATTGGTGTCTGAAGTGGAGCCTCGCCTCTATAACTACAGCAATGAGACAGCATGGCGCCAGAACATTGACAAGATCATGGGTGTCTGGTTCGAAGAAAAAGACCTGGACTTTGTGGCCTTGTATTTTGGAGAGCCAGACAGCACAGGCCACAAATACGGTCCAGACTCTGAACAGCGCAGGGAGATGGTGAGACAGGTGGACCGAACGGTGGGCTACCTAAGAGCTTCTGTCGAGCGCAACGGCCTCAGCCAGTGCCTCAATATCATCATCACTGCTGACCATGGCATGACCACAGTGTTACGTGGTGGCGTGGTGAACGAGATTGTACTCTCCAAAATCCCGGGATTCTCTTTCCAAGATCTAGACTTCCATCTGGTCGACTATGGGCCATCTGGTTTGCTCCTCCCTAAAACAGGAAGGCTTGAAAAAGTGTACAATGCCCTGAAGGGTGCTCATCCTCACCTCCATGTCTACAAGAAAGAGGAAATGCCCCCCAGGCTGCACTTTGCCCAAAATGACCGCATATTGCCCATCATCCTATGGGCCGATTTGGGATACGTCATTAATGGGTACATCCCAGTGCAGTTCAACAAAGGAGAGCATGGCTTTGACAATGACGATTTGGACATGAAGCCATTCTTCCGTGCAGTGGGACCTGCCTTCCGGAAGAATTTTACAGTGGAGCCATTTGAGACAGTCCACATATACTCACTGATGTGCCACCTCTTGGGCATCACACCTGAACCCAATGACGGACACCTGGACGCCACACGCGCCATGCTGCTCTCCTCTGAGCAACCGCACGaAAAAAACTCTGTCATGTCCAGAGTGTTCATTGGCCTCGGGGCTGTGGCTGGTTTCCTGCTGATCGTgtttgttgtcatggtgacCCACAGCGTCCTTAAGCACACAAGGAAAAAGCAGAGagcTGGTAGTTGCGAAAAATCTGAAGGTgatgacaaaaaacaaacatcatttTAGCCTGGTGTTGCATTCGTACCTTTTGCCCAATTCACTGGACAGAAAATGAGGAAATTTCAGTCTATGTATGAAACAGtacaaaccaataaacaaaacaaacaaacaaaacaaagaaattctCCTCTGCCATACAGCAAAAAAATGCTACATTTATTTAGCGTAAACATATAATGGTTAATTTATTGTGTGCATGTTATTGtaagttaaataataatgattttaaaaaatatataaatggcAAAGTTCCTTTACCTGCCAAGatggt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K12354 ENPP7; ectonucleotide pyrophosphatase/phosphodiesterase family member 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910075.2 True 1844 mRNA 0.47 7 2517791 2524179

Neighbor

gene id symbol gene type direction distance location
cbx2 cbx2 coding downstream 10650 2498979 ~ 2507141 (-)
tmem100a tmem100 coding downstream 115630 2397416 ~ 2402161 (-)
tmem220 tmem220 coding downstream 505799 2008006 ~ 2011992 (-)
mrps7 mrps7,LOC108262546,LOC107724659,LOC107579769 coding downstream 510514 2003622 ~ 2007277 (-)
jmjd8 jmjd8 coding downstream 535235 1979258 ~ 1982556 (-)
LOC113523961 LOC108272987,LOC106591917 coding upstream 389855 2914034 ~ 3079229 (-)
si:ch211-108d22.2 LOC108272973 coding upstream 555055 3079234 ~ 3112252 (-)
LOC113525116 LOC100526730,LOC108272815,LOC108280069,LOC108279574,LOC108280065 coding upstream 594156 3118335 ~ 3295290 (-)
trnay-gua_7 NA coding upstream 645155 3169334 ~ 3169421 (-)
LOC117595704 NA coding upstream 654338 3178517 ~ 3188087 (-)
G399016 LOC102218968 non-coding downstream 169979 2262604 ~ 2347812 (-)
G399054 hlf,LOC102226672,LOC103365050,LOC103481883,LOC107089311 non-coding downstream 172749 2343971 ~ 2345042 (-)
trnad-guc_31 NA non-coding downstream 269560 2248160 ~ 2248231 (-)
G398953 NA non-coding downstream 476868 2040301 ~ 2040923 (-)
G398935 NA non-coding downstream 485159 2031168 ~ 2032632 (-)
G399118 NA non-coding upstream 22285 2546464 ~ 2547110 (-)
G399245 NA non-coding upstream 184778 2708957 ~ 2709168 (-)
G399252 NA non-coding upstream 199142 2723321 ~ 2723543 (-)
G399300 NA non-coding upstream 278234 2802413 ~ 2802629 (-)
G399316 NA non-coding upstream 301653 2825832 ~ 2826047 (-)
G399028 NA other downstream 91185 2372296 ~ 2426606 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other downstream 140160 2354909 ~ 2377631 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 636733 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 926057 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 1001477 1462119 ~ 1516314 (-)
G399490 nup85,LOC106601803 other upstream 437534 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 493111 3017290 ~ 3295273 (-)
LOC113525117 NA other upstream 623120 3147299 ~ 3196563 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other upstream 699886 3224065 ~ 3234324 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 1596218 4120397 ~ 4132922 (-)

Expression


Co-expression Network