cbx2 (cbx2)


Basic Information

Item Value
gene id cbx2
gene name cbx2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 2498979 ~ 2507141 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910080.2
ccCCCTCGCGGTTCCTTGTCTTTCAGTGgtagaggagaaagaggaggaggaggagaaagaggaggaggaggaggaggaggaaagctGGTGCTGGAGCAGACATGGAGGAGTTGAGTGCTGTAGGAGAGCAGGTTTTCGATGCGGAGTGCATTCTCAGTAAAAGACTAAGAAAGGGAAAGTTGGAGTATCTGGTGAAGTGGAGAGGATGGTCGTCCAAgCACAATAGCTGGGAGCCTCAGGAGAACCTGCTGGACCCGAGACTGCTGGCTGCGTTTAATAAGAGGGAGCAAGAAAGAGAGCTGCTGATTCGGAAGCGAGGGAAACGACCACGTGGAAGACCTCGGAAAATAATGCAGGAGCCGGTTCAGCCAGTCTCAAAATCAAGCAGctcctcatcatcttcatcttcctctgattcatcatcatcttcatcctcctcgtcctcttcatctgaagatgatgatgacgaccAGGATGACAGCGACAGAAAGACAAAGCCAAGCCCTCGAGTGCGGGAGCTGCACCCTGTCCCACAGAAGAAGGCTCAGATCGTGCTGGCCAAGCCGGATCCTCCAAAGAAAAAGAAGCGAGGCAGGAAGCCTCTTGCTCCAGAGCTGAGGGCCTTGAAGCAGAATCAGGCCAAAAATTCACGCAAAATCATGAAGCCACCGCTAAAAGACTCTCTCTCAGACCTGCGTAGCAGCATTAAGAAACCACTGATGCCTGCCAGTTTCACATACACAGGCCTGAATCGAGCCGCCAACAGGGAGACAATAGCCATGCAGAACCGAGGATCTTTTACTGCCAACGAATCTCCAAAGAACACCCTGGGATCCACCCAGTCCCAAGGGAAACCTGTGACGGATTTTAAGCTTTCTGTCTCAGACATGGGTAATGGTGGAAGCCTGGATTTAAAAAACTCATCCTCTAAGTCTCCGGGAGTGGCTTCTCTGAGTTTGCACAATTCAAAACTTACCAACAGTACCAATGGACAGGCGGCAGGGGGAGCTCCTAATTGGACGAAAAAGCAGGAAACTCCAGGTCTGCAGAGACCAACGAACACAAAACCTTCTgcatcctctctctcctcagtgAAAAGCCCCAATACTCAGGTCTCCAGCTTGTCTGGTGTCAACAAAACACaactcagtgtcagtgcttctcCAAAAGATGTTACCAACCATAGGGGTTCTGGGAGCACAGTGAAAAAAGGTCCAGTGCAGGAAAAAAGTGCTCCAGCGGAAGGAGGGATTTTGGGTCGACCAGGATCCCGTGATATCAGCACACCAGGGGGGgtagaaaaagtaaaaatggaggaTCCATTGGAGAGATTGGGGAAAGCGAATCCGGGAAGGCAGCGGAAAGTCCCGACATTTACTGGCTCAAAAGATGGAGGCAAAATGACAAAACCGCTAAGTGAGATGAGCACGGGCGAGGAGGGAAGCAGTTCAGAATCCGAGCAGGAGTCTCCCTTCACTGGGGAAAGGCAGGAGTTATCATTGGAAGTGCAGTCAGAGTGCAAGGACTGGAGGCCAACACGAAGCCTCATCGAACATGTTTTCGTTACTGATGTCACTGCTAATCTAGTCACTGTAACTGTGAAAGAATCTCCCACTAGCGTGGGTTTCTTTAGCATCCGGAATTACTGAGAGAGTTGGAGAACAGATTCTTGAAGTATCTATTGATATTGGGTATCTTAGCAAAGTGTTGTAGATCACAGTTTCTTGTTACAACCACCAAGTCTGTTCTGGAAGCTGCTTCTTGAAGAAGAGGATACCTGAATCAAGGCAAGGATTTAAGGGACTGAAGAAAGTGGGTAAACCATTTGGTGATTCAAAAACTACTCAGTTTTCAACATTTGAGCGTTTTCAGGTGCTTAGCCaattggtgcttttttttttcattaaacaaCCACAGTGTCTTATAGTAAGACTGGAATTTCTGGAAACTCCTGGAAGCCTGGAAGATAACAAATCCTCAGACTTGGCGTTTACACAAGGACTGAACCAGTTGGTGCTTGGAGGTTAAGAAAATCTTCAAACTCGAAAATTGCATTTCCAGGATTTTAAATGTGGAActtttggttttaaaattagtttttttgttgAATTTCCCTGATTTGTCATCTAagtcagtggttctcaaagtggtgtCTGGGAGCCCCCAGGATCTGAAGCATAGCTAGGtggtctgtgattttattttatttttatttttatattttgttatagtgGAGGAATTCATTATTCAGCCTATTGAAGTTATAATATGCATTATTGTGGTCTTATTGGTATTAGTTTTTTGGCTGTTCACTTTAAATCAGAACTGTTGTTAgaaggttcaggaataaaaagcccCAGTAAATATCTGGGATATTACTGTAGatatttgaataatgagcctaatatttaaatagttggattatgttcataaaattaaTCTGTACTGAGGAGGTTCGTgaagtttattttacagttaaaggagtTCTTAGCtccaaaatgtttgagaaccaCCGATCTAAATGATGCTGGAGTCCAATGCTCAAGCTGGAATATACGATACTCAGGCAGGGAAAGGGTTTTTACATGCTATGCTCAGTTAATGGGGAGAAAAAAGTCAAGTCGATTTGTTTctgaaaatggaagaaaacaTGACATACAGTTCTCAAACAGTGTTTACAGACATGTACAACtacaaaaggaagaaaatgtATCCAaagttctttttgtttgtttttatctgaactcttctgggctttttttttaaatggccaGTTTTAGAGATGTGATCTTTTTTGCCTTATTATAATCGTAGAACACGTGGCCTTCTCTCTGATAGAACACAATATttccatctttatttattatttcttactaTCTTTATTTTAGATGATTATGCAAAaggttttgtaaaaaaaaataaaagttggcAGCTCATTTTAAATCA
>XM_026910081.2
tccCCCTCGCGGTTCCTTGTCTTTCAGTGgtagaggagaaagaggaggaggaggagaaagaggaggaggaggaggaggaggaaagctGGTGCTGGAGCAGACATGGAGGAGTTGAGTGCTGTAGGAGAGCAGGTTTTCGATGCGGAGTGCATTCTCAGTAAAAGACTAAGAAAGGGAAAGTTGGAGTATCTGGTGAAGTGGAGAGGATGGTCGTCCAAgCACAATAGCTGGGAGCCTCAGGAGAACCTGCTGGACCCGAGACTGCTGGCTGCGTTTAATAAGAGGGAGCAAGAAAGAGAGCTGCTGATTCGGAAGCGAGGGAAACGACCACGTGGAAGACCTCGGAAAATAATGGAGCCGGTTCAGCCAGTCTCAAAATCAAGCAGctcctcatcatcttcatcttcctctgattcatcatcatcttcatcctcctcgtcctcttcatctgaagatgatgatgacgaccAGGATGACAGCGACAGAAAGACAAAGCCAAGCCCTCGAGTGCGGGAGCTGCACCCTGTCCCACAGAAGAAGGCTCAGATCGTGCTGGCCAAGCCGGATCCTCCAAAGAAAAAGAAGCGAGGCAGGAAGCCTCTTGCTCCAGAGCTGAGGGCCTTGAAGCAGAATCAGGCCAAAAATTCACGCAAAATCATGAAGCCACCGCTAAAAGACTCTCTCTCAGACCTGCGTAGCAGCATTAAGAAACCACTGATGCCTGCCAGTTTCACATACACAGGCCTGAATCGAGCCGCCAACAGGGAGACAATAGCCATGCAGAACCGAGGATCTTTTACTGCCAACGAATCTCCAAAGAACACCCTGGGATCCACCCAGTCCCAAGGGAAACCTGTGACGGATTTTAAGCTTTCTGTCTCAGACATGGGTAATGGTGGAAGCCTGGATTTAAAAAACTCATCCTCTAAGTCTCCGGGAGTGGCTTCTCTGAGTTTGCACAATTCAAAACTTACCAACAGTACCAATGGACAGGCGGCAGGGGGAGCTCCTAATTGGACGAAAAAGCAGGAAACTCCAGGTCTGCAGAGACCAACGAACACAAAACCTTCTgcatcctctctctcctcagtgAAAAGCCCCAATACTCAGGTCTCCAGCTTGTCTGGTGTCAACAAAACACaactcagtgtcagtgcttctcCAAAAGATGTTACCAACCATAGGGGTTCTGGGAGCACAGTGAAAAAAGGTCCAGTGCAGGAAAAAAGTGCTCCAGCGGAAGGAGGGATTTTGGGTCGACCAGGATCCCGTGATATCAGCACACCAGGGGGGgtagaaaaagtaaaaatggaggaTCCATTGGAGAGATTGGGGAAAGCGAATCCGGGAAGGCAGCGGAAAGTCCCGACATTTACTGGCTCAAAAGATGGAGGCAAAATGACAAAACCGCTAAGTGAGATGAGCACGGGCGAGGAGGGAAGCAGTTCAGAATCCGAGCAGGAGTCTCCCTTCACTGGGGAAAGGCAGGAGTTATCATTGGAAGTGCAGTCAGAGTGCAAGGACTGGAGGCCAACACGAAGCCTCATCGAACATGTTTTCGTTACTGATGTCACTGCTAATCTAGTCACTGTAACTGTGAAAGAATCTCCCACTAGCGTGGGTTTCTTTAGCATCCGGAATTACTGAGAGAGTTGGAGAACAGATTCTTGAAGTATCTATTGATATTGGGTATCTTAGCAAAGTGTTGTAGATCACAGTTTCTTGTTACAACCACCAAGTCTGTTCTGGAAGCTGCTTCTTGAAGAAGAGGATACCTGAATCAAGGCAAGGATTTAAGGGACTGAAGAAAGTGGGTAAACCATTTGGTGATTCAAAAACTACTCAGTTTTCAACATTTGAGCGTTTTCAGGTGCTTAGCCaattggtgcttttttttttcattaaacaaCCACAGTGTCTTATAGTAAGACTGGAATTTCTGGAAACTCCTGGAAGCCTGGAAGATAACAAATCCTCAGACTTGGCGTTTACACAAGGACTGAACCAGTTGGTGCTTGGAGGTTAAGAAAATCTTCAAACTCGAAAATTGCATTTCCAGGATTTTAAATGTGGAActtttggttttaaaattagtttttttgttgAATTTCCCTGATTTGTCATCTAagtcagtggttctcaaagtggtgtCTGGGAGCCCCCAGGATCTGAAGCATAGCTAGGtggtctgtgattttattttatttttatttttatattttgttatagtgGAGGAATTCATTATTCAGCCTATTGAAGTTATAATATGCATTATTGTGGTCTTATTGGTATTAGTTTTTTGGCTGTTCACTTTAAATCAGAACTGTTGTTAgaaggttcaggaataaaaagcccCAGTAAATATCTGGGATATTACTGTAGatatttgaataatgagcctaatatttaaatagttggattatgttcataaaattaaTCTGTACTGAGGAGGTTCGTgaagtttattttacagttaaaggagtTCTTAGCtccaaaatgtttgagaaccaCCGATCTAAATGATGCTGGAGTCCAATGCTCAAGCTGGAATATACGATACTCAGGCAGGGAAAGGGTTTTTACATGCTATGCTCAGTTAATGGGGAGAAAAAAGTCAAGTCGATTTGTTTctgaaaatggaagaaaacaTGACATACAGTTCTCAAACAGTGTTTACAGACATGTACAACtacaaaaggaagaaaatgtATCCAaagttctttttgtttgtttttatctgaactcttctgggctttttttttaaatggccaGTTTTAGAGATGTGATCTTTTTTGCCTTATTATAATCGTAGAACACGTGGCCTTCTCTCTGATAGAACACAATATttccatctttatttattatttcttactaTCTTTATTTTAGATGATTATGCAAAaggttttgtaaaaaaaaataaaagttggcAGCTCATTTTAAATCA
>XM_026910082.2
GAAACAATGAAAActgcagcagtagcagcagcagcagcagcagcagcatcgtGTCGCTTGTTGCTTCAGTGTAACAGTTACAGTGCAACTCATCCCTGTGCAGAGTAAAGAGAAATGGAGAAgCACAATAGCTGGGAGCCTCAGGAGAACCTGCTGGACCCGAGACTGCTGGCTGCGTTTAATAAGAGGGAGCAAGAAAGAGAGCTGCTGATTCGGAAGCGAGGGAAACGACCACGTGGAAGACCTCGGAAAATAATGCAGGAGCCGGTTCAGCCAGTCTCAAAATCAAGCAGctcctcatcatcttcatcttcctctgattcatcatcatcttcatcctcctcgtcctcttcatctgaagatgatgatgacgaccAGGATGACAGCGACAGAAAGACAAAGCCAAGCCCTCGAGTGCGGGAGCTGCACCCTGTCCCACAGAAGAAGGCTCAGATCGTGCTGGCCAAGCCGGATCCTCCAAAGAAAAAGAAGCGAGGCAGGAAGCCTCTTGCTCCAGAGCTGAGGGCCTTGAAGCAGAATCAGGCCAAAAATTCACGCAAAATCATGAAGCCACCGCTAAAAGACTCTCTCTCAGACCTGCGTAGCAGCATTAAGAAACCACTGATGCCTGCCAGTTTCACATACACAGGCCTGAATCGAGCCGCCAACAGGGAGACAATAGCCATGCAGAACCGAGGATCTTTTACTGCCAACGAATCTCCAAAGAACACCCTGGGATCCACCCAGTCCCAAGGGAAACCTGTGACGGATTTTAAGCTTTCTGTCTCAGACATGGGTAATGGTGGAAGCCTGGATTTAAAAAACTCATCCTCTAAGTCTCCGGGAGTGGCTTCTCTGAGTTTGCACAATTCAAAACTTACCAACAGTACCAATGGACAGGCGGCAGGGGGAGCTCCTAATTGGACGAAAAAGCAGGAAACTCCAGGTCTGCAGAGACCAACGAACACAAAACCTTCTgcatcctctctctcctcagtgAAAAGCCCCAATACTCAGGTCTCCAGCTTGTCTGGTGTCAACAAAACACaactcagtgtcagtgcttctcCAAAAGATGTTACCAACCATAGGGGTTCTGGGAGCACAGTGAAAAAAGGTCCAGTGCAGGAAAAAAGTGCTCCAGCGGAAGGAGGGATTTTGGGTCGACCAGGATCCCGTGATATCAGCACACCAGGGGGGgtagaaaaagtaaaaatggaggaTCCATTGGAGAGATTGGGGAAAGCGAATCCGGGAAGGCAGCGGAAAGTCCCGACATTTACTGGCTCAAAAGATGGAGGCAAAATGACAAAACCGCTAAGTGAGATGAGCACGGGCGAGGAGGGAAGCAGTTCAGAATCCGAGCAGGAGTCTCCCTTCACTGGGGAAAGGCAGGAGTTATCATTGGAAGTGCAGTCAGAGTGCAAGGACTGGAGGCCAACACGAAGCCTCATCGAACATGTTTTCGTTACTGATGTCACTGCTAATCTAGTCACTGTAACTGTGAAAGAATCTCCCACTAGCGTGGGTTTCTTTAGCATCCGGAATTACTGAGAGAGTTGGAGAACAGATTCTTGAAGTATCTATTGATATTGGGTATCTTAGCAAAGTGTTGTAGATCACAGTTTCTTGTTACAACCACCAAGTCTGTTCTGGAAGCTGCTTCTTGAAGAAGAGGATACCTGAATCAAGGCAAGGATTTAAGGGACTGAAGAAAGTGGGTAAACCATTTGGTGATTCAAAAACTACTCAGTTTTCAACATTTGAGCGTTTTCAGGTGCTTAGCCaattggtgcttttttttttcattaaacaaCCACAGTGTCTTATAGTAAGACTGGAATTTCTGGAAACTCCTGGAAGCCTGGAAGATAACAAATCCTCAGACTTGGCGTTTACACAAGGACTGAACCAGTTGGTGCTTGGAGGTTAAGAAAATCTTCAAACTCGAAAATTGCATTTCCAGGATTTTAAATGTGGAActtttggttttaaaattagtttttttgttgAATTTCCCTGATTTGTCATCTAagtcagtggttctcaaagtggtgtCTGGGAGCCCCCAGGATCTGAAGCATAGCTAGGtggtctgtgattttattttatttttatttttatattttgttatagtgGAGGAATTCATTATTCAGCCTATTGAAGTTATAATATGCATTATTGTGGTCTTATTGGTATTAGTTTTTTGGCTGTTCACTTTAAATCAGAACTGTTGTTAgaaggttcaggaataaaaagcccCAGTAAATATCTGGGATATTACTGTAGatatttgaataatgagcctaatatttaaatagttggattatgttcataaaattaaTCTGTACTGAGGAGGTTCGTgaagtttattttacagttaaaggagtTCTTAGCtccaaaatgtttgagaaccaCCGATCTAAATGATGCTGGAGTCCAATGCTCAAGCTGGAATATACGATACTCAGGCAGGGAAAGGGTTTTTACATGCTATGCTCAGTTAATGGGGAGAAAAAAGTCAAGTCGATTTGTTTctgaaaatggaagaaaacaTGACATACAGTTCTCAAACAGTGTTTACAGACATGTACAACtacaaaaggaagaaaatgtATCCAaagttctttttgtttgtttttatctgaactcttctgggctttttttttaaatggccaGTTTTAGAGATGTGATCTTTTTTGCCTTATTATAATCGTAGAACACGTGGCCTTCTCTCTGATAGAACACAATATttccatctttatttattatttcttactaTCTTTATTTTAGATGATTATGCAAAaggttttgtaaaaaaaaataaaagttggcAGCTCATTTTAAATCA

Function

symbol description
cbx2 Predicted to enable methylated histone binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of PRC1 complex. Predicted to be active in heterochromatin. Is expressed in several structures, including digestive system; heart; nervous system; pectoral fin bud; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in 46,XY sex reversal 5. Orthologous to human CBX2 (chromobox 2).

NR:

description
PREDICTED: chromobox protein homolog 2

GO: NA

KEGG:

id description
K11451 CBX2; chromobox protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910080.2 True 2946 mRNA 0.43 5 2498979 2507140
XM_026910081.2 False 2944 mRNA 0.43 5 2498979 2507141
XM_026910082.2 False 2851 mRNA 0.43 4 2498979 2506756

Neighbor

gene id symbol gene type direction distance location
tmem100a tmem100 coding downstream 96818 2397416 ~ 2402161 (-)
tmem220 tmem220 coding downstream 486987 2008006 ~ 2011992 (-)
mrps7 mrps7,LOC108262546,LOC107724659,LOC107579769 coding downstream 491702 2003622 ~ 2007277 (-)
jmjd8 jmjd8 coding downstream 516423 1979258 ~ 1982556 (-)
LOC117596454 LOC108273013 coding downstream 528547 1962730 ~ 1970432 (-)
LOC113523971 LOC108272994 coding upstream 10650 2517791 ~ 2524179 (-)
LOC113523961 LOC108272987,LOC106591917 coding upstream 406893 2914034 ~ 3079229 (-)
si:ch211-108d22.2 LOC108272973 coding upstream 572093 3079234 ~ 3112252 (-)
LOC113525116 LOC100526730,LOC108272815,LOC108280069,LOC108279574,LOC108280065 coding upstream 611194 3118335 ~ 3295290 (-)
trnay-gua_7 NA coding upstream 662193 3169334 ~ 3169421 (-)
G399016 LOC102218968 non-coding downstream 151167 2262604 ~ 2347812 (-)
G399054 hlf,LOC102226672,LOC103365050,LOC103481883,LOC107089311 non-coding downstream 153937 2343971 ~ 2345042 (-)
trnad-guc_31 NA non-coding downstream 250748 2248160 ~ 2248231 (-)
G398953 NA non-coding downstream 458056 2040301 ~ 2040923 (-)
G398935 NA non-coding downstream 466347 2031168 ~ 2032632 (-)
G399118 NA non-coding upstream 39323 2546464 ~ 2547110 (-)
G399245 NA non-coding upstream 201816 2708957 ~ 2709168 (-)
G399252 NA non-coding upstream 216180 2723321 ~ 2723543 (-)
G399300 NA non-coding upstream 295272 2802413 ~ 2802629 (-)
G399316 NA non-coding upstream 318691 2825832 ~ 2826047 (-)
G399028 NA other downstream 72373 2372296 ~ 2426606 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other downstream 121348 2354909 ~ 2377631 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 617921 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 907245 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 982665 1462119 ~ 1516314 (-)
G399490 nup85,LOC106601803 other upstream 454572 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 510149 3017290 ~ 3295273 (-)
LOC113525117 NA other upstream 640158 3147299 ~ 3196563 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other upstream 716924 3224065 ~ 3234324 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 1613256 4120397 ~ 4132922 (-)

Expression


Co-expression Network