Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC113524042 |
| gene name | NA |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 1872919 ~ 1875037 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0009259 | ribonucleotide metabolic process | biological_process |
| GO:0009260 | ribonucleotide biosynthetic process | biological_process |
| GO:0006091 | generation of precursor metabolites and energy | biological_process |
| GO:1901293 | nucleoside phosphate biosynthetic process | biological_process |
| GO:0006163 | purine nucleotide metabolic process | biological_process |
| GO:0006164 | purine nucleotide biosynthetic process | biological_process |
| GO:0009123 | nucleoside monophosphate metabolic process | biological_process |
| GO:0009124 | nucleoside monophosphate biosynthetic process | biological_process |
| GO:0009126 | purine nucleoside monophosphate metabolic process | biological_process |
| GO:0009127 | purine nucleoside monophosphate biosynthetic process | biological_process |
| GO:0046390 | ribose phosphate biosynthetic process | biological_process |
| GO:0009150 | purine ribonucleotide metabolic process | biological_process |
| GO:0009152 | purine ribonucleotide biosynthetic process | biological_process |
| GO:0009156 | ribonucleoside monophosphate biosynthetic process | biological_process |
| GO:0072521 | purine-containing compound metabolic process | biological_process |
| GO:0072522 | purine-containing compound biosynthetic process | biological_process |
| GO:0009161 | ribonucleoside monophosphate metabolic process | biological_process |
| GO:0009165 | nucleotide biosynthetic process | biological_process |
| GO:0009167 | purine ribonucleoside monophosphate metabolic process | biological_process |
| GO:0009168 | purine ribonucleoside monophosphate biosynthetic process | biological_process |
| GO:0019693 | ribose phosphate metabolic process | biological_process |
| GO:0005975 | carbohydrate metabolic process | biological_process |
| GO:0043292 | contractile fiber | cellular_component |
| GO:0044449 | obsolete contractile fiber part | cellular_component |
| GO:0036379 | myofilament | cellular_component |
| GO:0005861 | troponin complex | cellular_component |
| GO:0005865 | striated muscle thin filament | cellular_component |
| GO:0015629 | actin cytoskeleton | cellular_component |
| GO:0030016 | myofibril | cellular_component |
| GO:0030017 | sarcomere | cellular_component |
| GO:0005488 | binding | molecular_function |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0005516 | calmodulin binding | molecular_function |
| GO:0043167 | ion binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_026910159.2 | True | 1425 | mRNA | 0.43 | 4 | 1872919 | 1875008 |
| XM_034301779.1 | False | 1401 | mRNA | 0.43 | 4 | 1872919 | 1875037 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113524043 | NA | coding | downstream | 11962 | 1858882 ~ 1860957 (-) |
| LOC117596466 | NA | coding | downstream | 49150 | 1821683 ~ 1823769 (-) |
| LOC117596405 | NA | coding | downstream | 63066 | 1808522 ~ 1809853 (-) |
| LOC113524064 | NA | coding | downstream | 104170 | 1766704 ~ 1768749 (-) |
| LOC113524053 | NA | coding | downstream | 143802 | 1726901 ~ 1729117 (-) |
| LOC113524085 | NA | coding | upstream | 41253 | 1916290 ~ 1932126 (-) |
| hspbp1 | hspbp1,LOC107550267 | coding | upstream | 59469 | 1934506 ~ 1951096 (-) |
| LOC117596454 | LOC108273013 | coding | upstream | 87693 | 1962730 ~ 1970432 (-) |
| jmjd8 | jmjd8 | coding | upstream | 104221 | 1979258 ~ 1982556 (-) |
| mrps7 | mrps7,LOC108262546,LOC107724659,LOC107579769 | coding | upstream | 128585 | 2003622 ~ 2007277 (-) |
| G398751 | NA | non-coding | downstream | 146391 | 1726120 ~ 1726528 (-) |
| G398743 | mpst,zgc:162544,LOC108273010,LOC105890773 | non-coding | downstream | 156456 | 1715036 ~ 1716463 (-) |
| G398732 | NA | non-coding | downstream | 181003 | 1691472 ~ 1691916 (-) |
| G398730 | NA | non-coding | downstream | 193237 | 1677188 ~ 1679682 (-) |
| G398689 | NA | non-coding | downstream | 211682 | 1658750 ~ 1661237 (-) |
| LOC117596467 | NA | non-coding | upstream | 162 | 1875199 ~ 1876420 (-) |
| G398922 | NA | non-coding | upstream | 76884 | 1951921 ~ 1952184 (-) |
| G398925 | NA | non-coding | upstream | 81009 | 1956046 ~ 1959562 (-) |
| G398942 | NA | non-coding | upstream | 123049 | 1998086 ~ 1998681 (-) |
| G398935 | NA | non-coding | upstream | 156131 | 2031168 ~ 2032632 (-) |
| st13 | st13,f10a1 | other | downstream | 281185 | 1565795 ~ 1591734 (-) |
| LOC113524069 | LOC108261293,LOC108261210 | other | downstream | 356605 | 1462119 ~ 1516314 (-) |
| LOC117596459 | NA | other | downstream | 410849 | 1457832 ~ 1462070 (-) |
| LOC117596427 | NA | other | downstream | 555283 | 1276278 ~ 1317636 (-) |
| fmc1 | fmc1 | other | downstream | 918719 | 951202 ~ 954200 (-) |
| mmd | mmd,LOC107567562,LOC107696363,LOC107695694 | other | upstream | 479872 | 2354909 ~ 2377631 (-) |
| G399028 | NA | other | upstream | 497259 | 2372296 ~ 2426606 (-) |
| G399490 | nup85,LOC106601803 | other | upstream | 1086676 | 2961713 ~ 2964157 (-) |
| G399489 | LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 | other | upstream | 1142253 | 3017290 ~ 3295273 (-) |
| LOC113525117 | NA | other | upstream | 1272262 | 3147299 ~ 3196563 (-) |
