LOC113524053


Basic Information

Item Value
gene id LOC113524053
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1726901 ~ 1729117 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910171.2
CCCTTTCACCCCACCTCTGCTACAGTTTAGTATAAAAGGAGCTCATCTTAAAATCTCACATGACTGACTGCAGTGAGCTAGAAGAGAAATAACAGCATACAGAAGGAGGTCAAATTTCACTCTTTAATTAGAGGTCTGTCTTTAAGAAACGCTGTGTCAAGATTAAGATGACCCAGCTTTCTTCATTTCAAGTTGTGCTGAAGGACACAGCTGAGGCTGTTATTGTTCCATTAAAAGACGGCATCTCCTCCCTGAACAGAGTCTACGAGGCCCTGATTAAGGCAGATGTACATCCTGTTACTGGGCAATGCTCCAACTATGACTACATCAGACAGCAGATAGTGCAGGCTCATCAGCATCTGCAGAGGTCTGAACAGACAGCAGGTTCAGGGTTAAAGAGTCTGGATAAAAACTTAGAGTGGCTTACACAAGATGAGGGAATACTCCAGTGTGAGAAGAGTAGCACCGAGACTCATTTACAAAACTTGAGAACAGAGCAGGCATCTAATGAAAAATTACTCAGGGACTCTCAGGGAGCTCTGGAGCAGGCCAGGGGAAATCTGAATTCAACCAAACAGACACTTCGGGAtcaggaaaacaggaaaaaaactgcTGAAATCATCACAGGTGTTGGGGCGGGGCTGTTAGTTATACCAGTCATTGGATGGATTGCAGGTTCTGCCATGCTGATTGGTGGTGCAGTTGAATTGGATCAAGCAGCACATGCTGTGAGAGTGGCTGAAGAAGAAGTGGAGAAGTCTGAGACTGACGTGAAAAAATACGAAAGTAAAGTGTCCGAATACGAGTCCAAGATTTCCCAGACCTGGTgtgacatcagccagaaagatGACAAGCTGAATCAGACACGTGAAGAAATCCAGAGGGTGAAGAAGCAGATCGAGTCTGTAGCTGAGTTCCAGCAGAAAGTCAGAAGAGCTGTCCACCTCCTGGGTGTTCTGAGCGGGAGGGCCAGCGTGGCTGAACATCAGACTCGCAGATTCATCCTCCAGGAGCCTGTGATGAGGGTGATGGAGGATGTGATGAAGGCCACAGAGCAAATCACAGGGAATGAGCTCCTCTATTACAATGACATGCCAAGGCTCATCCATCAGATGAAGGAGAACAACCAACGACTGGCAGCCATCTGTGCCTCGTAGAACAGCTCTACGAATAACTACACTTAACACTTATGTTGTTTTTAACAgatatttattgaataattgaataatggATATTCTGTGGATTCTTCTATCAGTATATTCTTGTGCTACTTCTCATAACTGCATGTCAGATTTTGTACAAAGTATAAAAAAGCAATGATTCTTTGTCatagaaaatgtgtttaaactgATGCACGGTGCTTGTAAGACTAAATTATAGACAGCAGGcttactttacttttgtttatgCTGAAAGAGTCATTTTCAAGAGCATTAAAAACCTCTAAATATGAGCACCAAGTAAATACACTAAACAGATGTTGCAATAAAGTTTGTTATATTTA

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910171.2 True 1504 mRNA 0.43 4 1726901 1729117

Neighbor

gene id symbol gene type direction distance location
mief1 mief1 coding downstream 36220 1683598 ~ 1690681 (-)
cbx7a LOC108273000,LOC103373459 coding downstream 77854 1639569 ~ 1649047 (-)
LOC113524072 LOC108272977,LOC108279536,LOC108280069,LOC108261210 coding downstream 188228 1522507 ~ 1538673 (-)
LOC117596456 LOC108272977,LOC108279574,LOC108280069,LOC108261293,LOC108261210 coding downstream 279848 1419889 ~ 1447053 (-)
LOC113524067 LOC108272977,LOC108280066,LOC108261293,LOC108261210 coding downstream 319137 1392428 ~ 1407764 (-)
LOC113524064 NA coding upstream 37587 1766704 ~ 1768749 (-)
LOC117596405 NA coding upstream 79405 1808522 ~ 1809853 (-)
LOC117596466 NA coding upstream 92566 1821683 ~ 1823769 (-)
LOC113524043 NA coding upstream 129765 1858882 ~ 1860957 (-)
LOC113524042 NA coding upstream 143802 1872919 ~ 1875037 (-)
G398751 NA non-coding downstream 373 1726120 ~ 1726528 (-)
G398743 mpst,zgc:162544,LOC108273010,LOC105890773 non-coding downstream 10438 1715036 ~ 1716463 (-)
G398732 NA non-coding downstream 34985 1691472 ~ 1691916 (-)
G398730 NA non-coding downstream 47219 1677188 ~ 1679682 (-)
G398718 NA non-coding downstream 61410 1647700 ~ 1665491 (-)
LOC117596467 NA non-coding upstream 146082 1875199 ~ 1876420 (-)
G398922 NA non-coding upstream 222804 1951921 ~ 1952184 (-)
G398925 NA non-coding upstream 226929 1956046 ~ 1959562 (-)
G398942 NA non-coding upstream 268969 1998086 ~ 1998681 (-)
G398935 NA non-coding upstream 302051 2031168 ~ 2032632 (-)
st13 st13,f10a1 other downstream 135167 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 210587 1462119 ~ 1516314 (-)
LOC117596459 NA other downstream 264831 1457832 ~ 1462070 (-)
LOC117596427 NA other downstream 409265 1276278 ~ 1317636 (-)
fmc1 fmc1 other downstream 772701 951202 ~ 954200 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other upstream 973 1730090 ~ 1881058 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 625792 2354909 ~ 2377631 (-)
G399028 NA other upstream 643179 2372296 ~ 2426606 (-)
G399490 nup85,LOC106601803 other upstream 1232596 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 1288173 3017290 ~ 3295273 (-)

Expression


Co-expression Network