LOC113524067 (LOC108272977,LOC108280066,LOC108261293,LOC108261210)


Basic Information

Item Value
gene id LOC113524067
gene name LOC108272977,LOC108280066,LOC108261293,LOC108261210
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1392428 ~ 1407764 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910185.2
CATTTTGTTAAGCgtttagaaaagaaaaacatcgtAAACTCGGGACAGAAACGCTGATGTTAATGTCACACAGTGTGACACAACAAGGACTAGTGACTAAAGGAATGTAATCCAGTCTAGCAGAAGAGATCAGACTGTTCAGGATACTTTACTAATCCTCAAAAGATGGAGACGTCTGATCTGGACACAGATAATGGAGCCCCGTCCTCAATAAAGGGTACAATCCAGgtaaagagatcagactcaccaacACCCAGCTGTGTCTCCATGAAGAGTGATGACTCTATGGCTCATCCTCCAGACTTTAAAGATGGAgactcctcatctgtacacagTTGTCTGCAGATGGCAGGAAAtggaatagaaaagaaaatcacagaTACAGGGCACAACCCAGAAACTGCTGTAAATGAATTAAAGGGATGTTTTAAAGTAAATCTGTTGAAGAAGTTTGACTGTTTGAATGGAGTGATAATAAAGCAGGGAAACCGAACACtcctgaatgagatctacacagagctctacatcacagagggagacagtggagacgtcaataatgaacatgagttGAGACAGATGGAGGCAGCATCCAGGAGAAAAACAACAGAGGAAACACCAATCAAGTGCAATGACATCTTTAAGTCCTTATCTGAAGAAGACAACCCCATCAGGACCGTTCTGACAAAGGGAGTCGCTGGCAtcggaaaaacagtctctgtgcagaagttcattctggactgggctgaagggaaagcaaatcaggacgtccACCTCATATTTCCACTTCCTTTcagagagctgaatttgatgaaggaCCAAAAACTGAGTCTGATGGAGCTAATTCATGTCTGTTTTAAGGagacaaaagaaatggacaTTTCTAGTTTAGAAaaagttctgtttatttttgatgGAATGGATGAGTGTTGGTTCCCTCTAGATTTCCAGaacacagtgagagtgtgtgatgtaaatgaATCAGCATCAGTGCATGTGCTGCTGATAAACCTGATCAaagggaatctgcttccctctgctctcatcTGGATCACCTCCCGaccagcagcagcagatcaAATCCCCTCTGAGTGTGTCGATCGAGTCACAGAGATAAGAGGGTTCAATGACCCACAGAaggaggagtacttcaggaagaggatcagtgatcagaacCTGGCCAataacatcatcacacacctgaAGTCAttaagaagcctctacatcatgtgccacatcccagtcttctgctggatttcagccactgttctagagagaatgttggttgaagcagagagtggagagatccccaagactctgactcaaatgtacacacacttcctcatcaTTCAGACAAACATCATAAGAGAAAAGTACTCAAAGAAGCAGGAGAGTGATGAAGATGTTCTCAAACTGGGACAACTGGCTTTTCAGCAGCTGATGAAATGCAACCAGATCTtttatgaggaagacctgaaagagtgtggcattgatgtgaAAGAAGCAGCAGTGTACTCTGGTGTGTGTACAcagatcttcagagaggagtttgggcttcaccagAGTAAAGTGTACTGCTTTGtgcatctgagtgttcaggagcaTCTCGCAGCTCTGTATGTGTATCTGACATTCATGATGGAAAAGAGAAATGTTCTAGATCAGAGTCAGCCTTCAAAACTTCAAAAACCTCAAAACTTCAAAACTTCAACACTCTCAGATGTCCACAAGAGTGCAGTACATAAGGCCTTAATAAGCCGGACTGGACATCTGGATCTTTTCCTTCGCTttcttctgggtctctcactggagtccaatcagaatcTCTTGCATGCTTTTGTAACACAGACAGGAAGTAGCTCCCAGAGCAAAGAGGAAACAGTTCAGTACATTAAGAAGGAGATCAGTAGAGACCTTCCTGCAGAGAagtccatcaatctgttccactgtctgaatgaactgggTGACAATTCTCTAGTGGAGGAAATCCAacactacctgaagtctggaaaacAAAGTGAACTCTCTCCTTCACAGTGGTctgctctggtgtttgtgttactgacaTCAGCGCAGGAGCTGGAAGAATTTGACCTGAGTAAATATACCACTACAGACAACATATCAGACTGGGTTCTTGTGAAGGTGATGCCTGTGGTTGCAGAATCCAGAAAAGCAATTATCAAGTGTGATACAATTCAAGGGAAAAGTTGGGCAGCTTTGGCCTCAGTGCTCAGATCAGAaacctccagtctgagagaactgcaTCTGACTGTGAATAAACTGGATCTTACGTGGAATAATCTAGGAGTCTCAGGAGTGGAGcgtctctctgctgtactggagaatcctcactgtaaactgaaaacactgaaGTTGTGGTATTGTGATGTGTCAGATGAAGGCTGcactgctctggcttcagctttGAAATCAAACAATTTACACCTCAAAGAACTGGACCTGACTAAGAATAATCTAGGAGACCCAGGAGTGAAGCgtctctctgctggactggagaattcTCACTgcaaactggagacactgagGTTGTTTAAATGTGGtatctcagatgaaggctgtgctgctttGGCtacagctctgagatcaaacccctcacacctgagagaccTGGACCTGTCTTATAATAATctaggagactcaggagtgaagcgtctctctgctgtactggagaatcctcaatgcaaactggagacactgagGTTGTGTGGTTGTGGTGTcacagatgaaggctgtgctgctctggcttcagctctgagctcaaacccctcacacctgagaaaACTGAATCTGTCTGAGAATCAACTAGGAGACTCAGGAAAGAAGCTGCTCTCTGAGCTTAAGGATGATGAAAGTAACGAACTACAGGAACTGATgATGAAGTGAACATCTGTATATATCTGATGAAGACTCTGTGTGTTCCTGCATTTCCATGTTGGGGAACAGAGAACACGTTAATAGACACCTAAGCTAGATTCTCTCCAGGAATGGTCAACGTCACTGTCTTCTGACTATGAATACAACTAAAGCTGTACGTCACCTGCTTCAGATATGCAGGTTGCTTTGACTGCAGCTTTCAGAACAAAGAGACATGTTAAAAAAGGACTTGATGGGACGCAGGCGATGAGAGGAGGTCATTCCTCCTGCAGTTATCATAATGAATCCTTTGCCATTGTCCCTGAATCCTGTGctgggtcagcatgggcactgtGACTGGTCCGCAGCTACgtagccccatacacagcaaactgtgatgcactgtgtgttctgtcgCCTTtttatcagagccagcattaactttttcagtaatttgtgctacagtagctcttctgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910185.2 True 3351 mRNA 0.44 11 1392428 1407764

Neighbor

gene id symbol gene type direction distance location
LOC113524073 NA coding downstream 4954 1383691 ~ 1387474 (-)
zgc:65811 NA coding downstream 124582 1255673 ~ 1267846 (-)
LOC113524089 emp2,LOC100304972 coding downstream 141886 1242787 ~ 1250542 (-)
LOC117596401 NA coding downstream 216221 1173400 ~ 1176207 (-)
LOC113524091 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983 coding downstream 268322 1115634 ~ 1124106 (-)
LOC117596456 LOC108272977,LOC108279574,LOC108280069,LOC108261293,LOC108261210 coding upstream 12125 1419889 ~ 1447053 (-)
LOC113524072 LOC108272977,LOC108279536,LOC108280069,LOC108261210 coding upstream 114743 1522507 ~ 1538673 (-)
cbx7a LOC108273000,LOC103373459 coding upstream 231805 1639569 ~ 1649047 (-)
mief1 mief1 coding upstream 275834 1683598 ~ 1690681 (-)
LOC113524053 NA coding upstream 319137 1726901 ~ 1729117 (-)
G398549 NA non-coding downstream 26487 1351595 ~ 1365941 (-)
G398545 LOC108272479 non-coding downstream 29392 1346939 ~ 1363036 (-)
G398542 LOC108272479,LOC108272979,LOC108266218,LOC108266219,LOC108266898 non-coding downstream 50601 1341193 ~ 1341827 (-)
G398509 NA non-coding downstream 66410 1252043 ~ 1326018 (-)
G398665 NA non-coding upstream 76421 1484185 ~ 1485548 (-)
G398679 LOC108272998 non-coding upstream 145863 1553627 ~ 1554940 (-)
G398667 NA non-coding upstream 156695 1564459 ~ 1577378 (-)
G398686 NA non-coding upstream 159020 1566784 ~ 1578770 (-)
G398697 NA non-coding upstream 194472 1602236 ~ 1603986 (-)
LOC117596427 NA other downstream 74792 1276278 ~ 1317636 (-)
fmc1 fmc1 other downstream 438228 951202 ~ 954200 (-)
G398408 poldip3 other downstream 471925 919264 ~ 920503 (-)
LOC113536357 NA other downstream 478076 914198 ~ 914352 (-)
LOC117596482 NA other downstream 482205 910069 ~ 910223 (-)
LOC117596459 NA other upstream 50068 1457832 ~ 1462070 (-)
LOC113524069 LOC108261293,LOC108261210 other upstream 54355 1462119 ~ 1516314 (-)
st13 st13,f10a1 other upstream 158031 1565795 ~ 1591734 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other upstream 322326 1730090 ~ 1881058 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 947145 2354909 ~ 2377631 (-)

Expression


Co-expression Network