LOC113524073


Basic Information

Item Value
gene id LOC113524073
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1383691 ~ 1387474 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910196.2
TCTCAGCAGCCCCGCCCCTCGCTCCATGCACATGCACGCTGCATGCACTGCTCAGCTTTCTGCACAGCTTTACCCTGCAAATAGTGtcgattttcttttctttccgaGTTTTACAATTCAGTCACATTCAGTTAAAAtcaaaagcttgttttttttttcattttgttagtttgttttttttatgtgcttccctgtcatttatttttaattgaagTGTTGAACAGTTTACATCTCTCAGCATGAAGCCAGAAGCCAGTCAAGACTGTTTAAGACAATCTTCCCAGACTCCTGCAGATGACTGCTCACAGCTCTGGGAAGATGTGCAGGCAAGCACATCCAGCTCGGAGGATCAACAAAATGGAGGAATGAAGGAGCCGCATGTAAAAGAAGAACCTAAACACTCTCTGTACAGTCTTGCAGACTATTGCAGATCCTTCTTCATCAAAAAGCACAAGACGGTGTCATCTCCAGGCGTCATCATCCCTGATATTCCTGACGCAGGTCTGGGATGGTCCGGGAAGGCTGAAGCACACTTCGGGCCTTACCAGGGAGACtcgacagacagagaggaaacTATGACGAATCCCTTCTCTTGGGTGAGTAAAATCAACGTATGCCAGCGGCTTCAAAAATCATATCCCTGCTCACACTGTGGGAAGTGTTTTCCTATTCTGTCTCTATTTAAAATCCACGAACGCGTTCACACGGGAGAGAAACCATATCACTGCTCGctgtgtgggaagagttttgctCAAAAGACAACTCTCAGAAAACACCatcgcattcacacaggagagaagccatatcactgctcacaCTGTGGGAAGGGTTTTTCTAGCAGGCGTTATACTAAAGTACATGaacgcattcacacaggagagaagccatatcactgctcacagtgtgggaagcgTTTTAATGACCAGCCTGCTCTCACAAAACACCatcgcattcacacaggagagaagccatatcactgctcagaatgtgggaagagttttgccCAAATGAGTAATTTCAAAAAACAccagctcattcacacaggaCTGAAGCCAtatcactgttcacagtgtgggaagTGTTTTACTCAGCCAAGTGCTCTCCAAACACAcgagcgcattcacacaggactGAAGCCATATATctgttcacagtgtgggaagTGTTTTACTCGGCAAAGTGCTCTCCAAATACAcgagcgcattcacacaggactGAAGCCATATtactgttcacagtgtgggaagTGTTTTACTCAGCCAAGTGCTCTCCAAACACAcgagcgcattcacacaggactGAAGCCATATATctgttcacagtgtgggaagTGTTTTACTCAAGCAAGTTCTCTCCGAACACACCAGCGTATTCACACAGCGGGGGAGCTTAGGAAAGACAAATTCACTAACACAAAGTCATCAGCTTCTGACATTTGAATTTACTCTGGATCcactatgaccctgaccagaataaggcagttactaaagaatGAATGCGAAAAAAACTAGATATGGTCCCCATGGACTGTGCTAAGCAGAAAAGTGGTctaaatttctttattttttctgctttgtCTGCTTTACATTATGCAATAAACAGAGCATAAAATGACAAAT

Function

GO:

id name namespace
GO:0016741 transferase activity, transferring one-carbon groups molecular_function
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03030 DNA replication
ko03420 Nucleotide excision repair

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910196.2 True 1619 mRNA 0.44 5 1383691 1387474

Neighbor

gene id symbol gene type direction distance location
zgc:65811 NA coding downstream 115845 1255673 ~ 1267846 (-)
LOC113524089 emp2,LOC100304972 coding downstream 133149 1242787 ~ 1250542 (-)
LOC117596401 NA coding downstream 207484 1173400 ~ 1176207 (-)
LOC113524091 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983 coding downstream 259585 1115634 ~ 1124106 (-)
LOC117596399 NA coding downstream 271782 1108693 ~ 1111909 (-)
LOC113524067 LOC108272977,LOC108280066,LOC108261293,LOC108261210 coding upstream 4954 1392428 ~ 1407764 (-)
LOC117596456 LOC108272977,LOC108279574,LOC108280069,LOC108261293,LOC108261210 coding upstream 32415 1419889 ~ 1447053 (-)
LOC113524072 LOC108272977,LOC108279536,LOC108280069,LOC108261210 coding upstream 135033 1522507 ~ 1538673 (-)
cbx7a LOC108273000,LOC103373459 coding upstream 252095 1639569 ~ 1649047 (-)
mief1 mief1 coding upstream 296124 1683598 ~ 1690681 (-)
G398549 NA non-coding downstream 17750 1351595 ~ 1365941 (-)
G398545 LOC108272479 non-coding downstream 20655 1346939 ~ 1363036 (-)
G398542 LOC108272479,LOC108272979,LOC108266218,LOC108266219,LOC108266898 non-coding downstream 41864 1341193 ~ 1341827 (-)
G398509 NA non-coding downstream 57673 1252043 ~ 1326018 (-)
G398516 wbp11,LOC107751605 non-coding downstream 59961 1320816 ~ 1323730 (-)
G398665 NA non-coding upstream 96711 1484185 ~ 1485548 (-)
G398679 LOC108272998 non-coding upstream 166153 1553627 ~ 1554940 (-)
G398667 NA non-coding upstream 176985 1564459 ~ 1577378 (-)
G398686 NA non-coding upstream 179310 1566784 ~ 1578770 (-)
G398697 NA non-coding upstream 214762 1602236 ~ 1603986 (-)
LOC117596427 NA other downstream 66055 1276278 ~ 1317636 (-)
fmc1 fmc1 other downstream 429491 951202 ~ 954200 (-)
G398408 poldip3 other downstream 463188 919264 ~ 920503 (-)
LOC113536357 NA other downstream 469339 914198 ~ 914352 (-)
LOC117596482 NA other downstream 473468 910069 ~ 910223 (-)
LOC117596459 NA other upstream 70358 1457832 ~ 1462070 (-)
LOC113524069 LOC108261293,LOC108261210 other upstream 74645 1462119 ~ 1516314 (-)
st13 st13,f10a1 other upstream 178321 1565795 ~ 1591734 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other upstream 342616 1730090 ~ 1881058 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 967435 2354909 ~ 2377631 (-)

Expression


Co-expression Network