mrps7 (mrps7,LOC108262546,LOC107724659,LOC107579769)


Basic Information

Item Value
gene id mrps7
gene name mrps7,LOC108262546,LOC107724659,LOC107579769
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 2003622 ~ 2007277 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910199.2
GAATTAGCGCACCAGGCAGTATTATCGAACACCACACATGGGGTCCTTCTGAATCGCAGTTTTCAACATGGCGGCCTCCATCGCGAAGCTGTTAGCGCCTTGGACTCCCcgGTTGTGTCCGGTTCGGTGGACTCGGTATAACCCGTACTACCTAGAACCTGAGCCTCGTAAGGAAGTCTACTCCATCCCCGAGTCAGAGCTCAGCCCTGAGcagaaggaggaaaaggagCTGAAAACTCTGAGACCCATCAAAGCAGCCAAGTCCAGCGCCACCAGCTCGCCGTTCGATGATCCAATGATCAGCAAGTTCGTCAACACGATCATGCAAGATGGCAACAAGGTCCTGGCACGAGGAATCATGACACAGACTCTGGAGATGATCAAGAGGAGGCAGGTGGAGAAGTACCACCGCGCTCCGACAGCCGAGAAGGAGACGATCGAGTGTAACCCGTACGCCATCTTCCACCAGGCCATAGAGAACTGCAAACCCATCATCGGCCTGGCCAGCATTCAGAAAGGAGGCAGGAACTACCAGGTTCCTGTTCCTCTAACGGATAAGCGTCGCCGTTTCCTGGCCATGAAATGGATGATCACAGAGTGCAGAGACAACAAACACCGGCGCACGCACATGTACGAGAAACTCTCGCAGGAGCTCCTCGCTGCTTTCAACAACGAGGGGAACGTCATTAAACGCAAACACGACTTGCACAAGATGGCTGAAGCCAACCGGGCGTATGCGCACTACCGCTGGTGGTAACAAGGGAACAGCTTTCAGGGTCCTCCTCCTCACACACCCTGCGTTTCAGTAGTGTTTAGGACAGGATTGGAACACAGCCTTGGACTCGTTATGTTGTGTTTCTACAGTTCCACAGGAGCATCAGAACCTGTGTGATctaaaatcttaaataaaccGGATACACAATACAAACGTGTTTGGACTCCACAAGATTTAATCTGCGACTCCTCAGTCATTCTGATGCttgtttaatgtaataatgtaaaccTAAATATATGaaagtgtaatgtgtgttttttttctattataacagttaataaattaaaattaaaaacc

Function

symbol description
mrps7 Predicted to enable mRNA binding activity and rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation and ribosomal small subunit assembly. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial small ribosomal subunit. Predicted to be active in ribosome. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 34. Orthologous to human MRPS7 (mitochondrial ribosomal protein S7).

NR:

description
PREDICTED: 28S ribosomal protein S7, mitochondrial-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K02992 RP-S7, MRPS7, rpsG; small subunit ribosomal protein S7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910199.2 True 1072 mRNA 0.49 6 2003622 2007277

Neighbor

gene id symbol gene type direction distance location
jmjd8 jmjd8 coding downstream 21066 1979258 ~ 1982556 (-)
LOC117596454 LOC108273013 coding downstream 33190 1962730 ~ 1970432 (-)
hspbp1 hspbp1,LOC107550267 coding downstream 52526 1934506 ~ 1951096 (-)
LOC113524085 NA coding downstream 71496 1916290 ~ 1932126 (-)
LOC113524042 NA coding downstream 128585 1872919 ~ 1875037 (-)
tmem220 tmem220 coding upstream 729 2008006 ~ 2011992 (-)
tmem100a tmem100 coding upstream 390139 2397416 ~ 2402161 (-)
cbx2 cbx2 coding upstream 491702 2498979 ~ 2507141 (-)
LOC113523971 LOC108272994 coding upstream 510514 2517791 ~ 2524179 (-)
LOC113523961 LOC108272987,LOC106591917 coding upstream 906757 2914034 ~ 3079229 (-)
G398942 NA non-coding downstream 4941 1998086 ~ 1998681 (-)
G398925 NA non-coding downstream 44060 1956046 ~ 1959562 (-)
G398922 NA non-coding downstream 51438 1951921 ~ 1952184 (-)
LOC117596467 NA non-coding downstream 127202 1875199 ~ 1876420 (-)
G398751 NA non-coding downstream 277094 1726120 ~ 1726528 (-)
G398935 NA non-coding upstream 23891 2031168 ~ 2032632 (-)
G398953 NA non-coding upstream 33024 2040301 ~ 2040923 (-)
trnad-guc_31 NA non-coding upstream 240883 2248160 ~ 2248231 (-)
G399016 LOC102218968 non-coding upstream 255327 2262604 ~ 2347812 (-)
G399054 hlf,LOC102226672,LOC103365050,LOC103481883,LOC107089311 non-coding upstream 336694 2343971 ~ 2345042 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 122564 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 411888 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 487308 1462119 ~ 1516314 (-)
LOC117596459 NA other downstream 541552 1457832 ~ 1462070 (-)
LOC117596427 NA other downstream 685986 1276278 ~ 1317636 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 347632 2354909 ~ 2377631 (-)
G399028 NA other upstream 365019 2372296 ~ 2426606 (-)
G399490 nup85,LOC106601803 other upstream 954436 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 1010013 3017290 ~ 3295273 (-)
LOC113525117 NA other upstream 1140022 3147299 ~ 3196563 (-)

Expression


Co-expression Network