cbx7a (LOC108273000,LOC103373459)


Basic Information

Item Value
gene id cbx7a
gene name LOC108273000,LOC103373459
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1639569 ~ 1649047 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910204.2
tacagcagGCACGCGCTGAAGCACACAccgagtaagagagagagagagagagagagagagagagagagagagagagagtgtggatGTGTCGCAGATTTTAAAACTCCGTGAAAGAGGAGGGGAGCTCGCGCGCTCCGTGCACCGAAAAATGGTAGAAAACGCAGAAGTGTCCGGATAACGGGTTAGAAACGGGACAGCTCGAGCTTCTGCACTGATCCCAGAgcaaagaagaagaggaagaagaagaaggaggaggaggagaagagaagaagaagaagaagaagtgcaACGCGCTAGAAATcgaaaagcaaataaataagtgaGTAAGTTTGAAGGCTGCGCGGGGAGATGGAGCTGTCATCCATCGGAGAGCAAGTGTTCGCTGTGGAGTCCATCACCAAGAAGAGAGTTAGGAAGggaaACGTGGAGTATCTGCTGAAGTGGCAAGGATGGCCTCCTAAgtacAGCACGTGGGAGCCGGAGGATAACATCCTGGACCCTCAGCTCGTTCTTGCCTTTGAGGAGAAggAGGAGCGGGACAGAGCGCAGGTTCACAGGAGGAAAGGCCTGAGGCCCCGCAGACTCGTCTTACGGAACATCTACACCATGGAGCTCCGAAGCGCTCAGAAAACTTCGGAGAAACCCACGCCCCGATTCCGCCTGTCACTCGCCCGCTCCATGGGGGCGGGGCTACAGCATAATGGGCGGCGCTGCAGGAACGGCGAAGGCAGAgtctaccaccaccaccacctttTGAAGCGCAGGAGCAGGCAGTGTGCGTCCAAACCGCCGGAAAGTGCAGAGTCGCCACGGCAACGAACAGCGGAGgcggaggatgaggaggagaaagagtgggagaaagaggaggagcatcaggagaagaagaagaggaggaagataGAAAAAGAGGAGCATCATGACATTCCACACGccCAGGAGATGACAGAAGACCACGCCCCCTCAACACAGGAAGCTGTCATCACAGAGGGAAAACCAGAACACTGCGCTTCCTCCCCCGACCACGAGGTGGAGCCACCCAGCACTGAGACCGGTTCGGCTACGGCAACAGCGACGGACCAGTCAGCGAGCActactaacacaaacacacacgagcACAAGCCAATCACAGACGCTTCAGGGGGCGGAGTCTCCCCAGATAAACCTATGACTGACAAATCactgaaaagcagctcagaagCGGGTGTGATCACAGACAGGGTCCAAAACCGAGCCTCGGTGATAACGGTGCGAcatttgattgacaggtttGCGCaggatgaggagagagagacaggtgagacagacagcaaaGACAAGAGCGAGACAGACAAGGACGAGGTCACGGCCGAGTGCACCACAACCTTGCAGCTGAGCACGGAGGTCAGAACAGACGCGTCTGAGGCATCCGAGAGCACGCGGCATCCTGGGAAGGTGATCGTGACTAACGTGACGATTAACTCGCTGACGGTGACGTTTAAAGAGGCGATGACGGCGGAAGGGTTTTTCAGCAGCTACGGGCTGCAGGTCTGAGGGACGAGGAGGAAAGAGGAAACACACTTACAACCAAAAGTACTTCCTGTCGAATTGCTAATGTGGCTAACGATCAAAGAGAGAGGAGTTAGCAAATCATTTAGAGTAACGCATGCTAGCTCGAATTCGTTAGAAATGTTAGCATTTGAGGTGAAGTACGCCTTATTCATGCGAGAGTGAGGGATTACAGGACCAGCCAATGTGTTGATCTGTCGATGTTTTGAAGCCTTTCGCCGTTTTTGCTTTACAGATACTcgtctgttgttaaaaaaggGTTACGTTTCCGTCTCCGTCCTTTCGTTTTAGTGAAAACATGAACAATAGTGGAAGGATTTCCATGTTGCTGACAGTGACGCCTTTAAATGCACGCAAAAACGAACGCTGTTTCCACTTAACGCATCGTTGGTGTTAACCGttccattaaaaacaaaaaaaaaaaaaagatgatgtgtACGGATTTAGTGCAAGTTCTTGTTTCAGGGACAGCAATGACTAGATGACATCATCACCCCGTAGTCTCTGCAGCCCTGTCCCCCGTCTGGGACAGGTGAAGGTTTAGCCGGCTCGGGTTTTGCTCTGCCTTGTGCTCCGAGGCCTTGCTGCATTTTTAACGAGTCCGTATCGGTTCACATTACAAATGCCACCGCACAGGCTGTACTGAAGTGTAGGCTGCATTCACAAAGCGTTGGAAAACAGTGTGCTTTAGATGTATCTCTAGCATGCGACAAAGTCGAGCTGAAGTTCATGTGGTGACACtgcaaccaaaaataaaaaaaataaaaaaagagagagaaaaacatgcCGTTGTATGACTTGTAGTTTATCTATGGcaagattacatttttatttgtatttccgataaataaagtcacaaaaaaaaaa

Function

NR:

description
PREDICTED: chromobox protein homolog 8-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910204.2 True 2412 mRNA 0.50 6 1639569 1649047

Neighbor

gene id symbol gene type direction distance location
LOC113524072 LOC108272977,LOC108279536,LOC108280069,LOC108261210 coding downstream 100896 1522507 ~ 1538673 (-)
LOC117596456 LOC108272977,LOC108279574,LOC108280069,LOC108261293,LOC108261210 coding downstream 192516 1419889 ~ 1447053 (-)
LOC113524067 LOC108272977,LOC108280066,LOC108261293,LOC108261210 coding downstream 231805 1392428 ~ 1407764 (-)
LOC113524073 NA coding downstream 252095 1383691 ~ 1387474 (-)
zgc:65811 NA coding downstream 371723 1255673 ~ 1267846 (-)
mief1 mief1 coding upstream 34551 1683598 ~ 1690681 (-)
LOC113524053 NA coding upstream 77854 1726901 ~ 1729117 (-)
LOC113524064 NA coding upstream 117657 1766704 ~ 1768749 (-)
LOC117596405 NA coding upstream 159475 1808522 ~ 1809853 (-)
LOC117596466 NA coding upstream 172636 1821683 ~ 1823769 (-)
G398697 NA non-coding downstream 35583 1602236 ~ 1603986 (-)
G398686 NA non-coding downstream 60799 1566784 ~ 1578770 (-)
G398667 NA non-coding downstream 62191 1564459 ~ 1577378 (-)
G398679 LOC108272998 non-coding downstream 84629 1553627 ~ 1554940 (-)
G398665 NA non-coding downstream 154021 1484185 ~ 1485548 (-)
G398689 NA non-coding upstream 9703 1658750 ~ 1661237 (-)
G398730 NA non-coding upstream 28141 1677188 ~ 1679682 (-)
G398732 NA non-coding upstream 42425 1691472 ~ 1691916 (-)
G398743 mpst,zgc:162544,LOC108273010,LOC105890773 non-coding upstream 65989 1715036 ~ 1716463 (-)
G398751 NA non-coding upstream 77073 1726120 ~ 1726528 (-)
st13 st13,f10a1 other downstream 47835 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 123255 1462119 ~ 1516314 (-)
LOC117596459 NA other downstream 177499 1457832 ~ 1462070 (-)
LOC117596427 NA other downstream 321933 1276278 ~ 1317636 (-)
fmc1 fmc1 other downstream 685369 951202 ~ 954200 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other upstream 81043 1730090 ~ 1881058 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 705862 2354909 ~ 2377631 (-)
G399028 NA other upstream 723249 2372296 ~ 2426606 (-)
G399490 nup85,LOC106601803 other upstream 1312666 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 1368243 3017290 ~ 3295273 (-)

Expression


Co-expression Network