LOC113524089 (emp2,LOC100304972)


Basic Information

Item Value
gene id LOC113524089
gene name emp2,LOC100304972
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1242787 ~ 1250542 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910219.2
GAGGGAGGAGACTAAGTGGGTTTGGTACCTTTTTTCCTGTGTACACTCACATGAGCATTCTGAATTTGGAGAGCAAAGTGTATAACGGAGTGAAGAGCACAGAAggagaagacacacacacaaagacacacacacttgcaagCTCAACTACAACTACAAGgcatcATGTTGTTCCTCCTTGCTGGCATTTTTCTCCTGCATGTTGCTACAGTCATCCTCCTGCTCGCTGCCACCATTGAAAATGCCTGGTGGACTACTGGCCTGATGTCCACTGATATTTGGGCTCGTTGGCTTTGGAACGGTGCTCAGTGGAACTATACGGCGCTTCCAAACACCTATCCtgaagattatcTCCAGGCAGTGCAGGCGTGCTCCATATTAGCGTGTGTGTTTTCGGGTATTGGTTTGTTCGTGTTCCTCGCTCAGCTCTTCACACTGGCTAAAGGAAAACGCTTCATCTTATCTGGAGTGTTCCAGTTGCTGTCCTGTCTGTGTATTATGATCGCTGCCTCCATCTACACTGATATTTTCCACAAGAATGAGAGTGGATGGTACGGTCCGAGTTTCGTCATTGCCTGGATCGCCTTCGCTTTCAGCTTCATCTCCTGCATCATCTACTTCATCCTGCGCAAGAAAACAACCTGAGGAgctcacacactcctacacacacactcctacacacacacacacacacacacacacacgctctctctctctctctcacacacacacagagcttgaTCAGCTACACATCACTGTATTGTAGAAGGAGAGGATTGTTTATGCTTTTATGCATAAGAATAATTTGCATGCATTAATTATGCACATAATTAATCCATAAACTAGAAAATGGTGacgtaaaaggaaaaaaagaaaatcagaaaagagTGAcaagggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtggcaaAAGCTGAATAAATAATGGATTAGttctttaaagtaaattaaaactTACGCTGTTACATTTGTGGGGAAAAttcttagatttttaaaatttattctaTACCGTAATGTACCACTTTTATAATGTTAGAAGTATTTTTACATTCTGggtgaatatgaatatgaatatgaatatgttttaATGAATTACAAACAACTGGAATGAAATGTAACTGTGTATTAGTTgctattttaatacaaaaaatcCAATTTTTCTTACCATTTATTTGCATAAATCTCTCTTCATGTGTAAATATGGTGTtgtttagttttagtttctTGTGTGCTTCCATTtcgtttacacacacacacacacacacaccctcagtaCACGGCTCGGCGTAacgctggattctgattggtccttggAGTTAGGAGAAAACACTCACTCATTGTCCTAATCGTTACACGCTGTTACAGATTTTCTCTAATTTCTATGCACTTATTTcacattctgtatttttcatAATGCAAGcttgtaataaaattataactgtaattttattttaactgtaaaagTCCCCGGAGTCAAAGTGTGTAAACGATAGTGAAAAAAGCACACTAAGAATGATTAatctttagttttatttttgttacatgatcttttttatgcagtgtgtattAAAGTTTGATCtcaaagta

Function

symbol description
emp2 Involved in regulation of glomerular filtration. Predicted to be located in cytoplasm and nucleus. Predicted to be active in plasma membrane. Is expressed in blood vessel; orbit; pectoral fin; pharyngeal arch; and pronephros. Human ortholog(s) of this gene implicated in nephrotic syndrome type 10. Orthologous to human EMP2 (epithelial membrane protein 2).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910219.2 True 1622 mRNA 0.39 5 1242787 1250542

Neighbor

gene id symbol gene type direction distance location
LOC117596401 NA coding downstream 66580 1173400 ~ 1176207 (-)
LOC113524091 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983 coding downstream 118681 1115634 ~ 1124106 (-)
LOC117596399 NA coding downstream 130878 1108693 ~ 1111909 (-)
LOC113527139 NA coding downstream 403346 833892 ~ 839441 (-)
LOC113527126 NA coding downstream 477660 756001 ~ 765127 (-)
zgc:65811 NA coding upstream 5131 1255673 ~ 1267846 (-)
LOC113524073 NA coding upstream 133149 1383691 ~ 1387474 (-)
LOC113524067 LOC108272977,LOC108280066,LOC108261293,LOC108261210 coding upstream 141886 1392428 ~ 1407764 (-)
LOC117596456 LOC108272977,LOC108279574,LOC108280069,LOC108261293,LOC108261210 coding upstream 169347 1419889 ~ 1447053 (-)
LOC113524072 LOC108272977,LOC108279536,LOC108280069,LOC108261210 coding upstream 271965 1522507 ~ 1538673 (-)
LOC117596417 NA non-coding downstream 51336 1188553 ~ 1191451 (-)
G398459 NA non-coding downstream 103119 1136637 ~ 1139668 (-)
G398437 NA non-coding downstream 140440 1025420 ~ 1102347 (-)
G398433 LOC108272747 non-coding downstream 158956 1014943 ~ 1083831 (-)
G398446 NA non-coding downstream 164759 1076828 ~ 1078028 (-)
G398509 NA non-coding upstream 1501 1252043 ~ 1326018 (-)
G398516 wbp11,LOC107751605 non-coding upstream 70274 1320816 ~ 1323730 (-)
G398542 LOC108272479,LOC108272979,LOC108266218,LOC108266219,LOC108266898 non-coding upstream 90651 1341193 ~ 1341827 (-)
G398545 LOC108272479 non-coding upstream 96397 1346939 ~ 1363036 (-)
G398549 NA non-coding upstream 101053 1351595 ~ 1365941 (-)
fmc1 fmc1 other downstream 288587 951202 ~ 954200 (-)
G398408 poldip3 other downstream 322284 919264 ~ 920503 (-)
LOC113536357 NA other downstream 328435 914198 ~ 914352 (-)
LOC117596482 NA other downstream 332564 910069 ~ 910223 (-)
LOC117596481 NA other downstream 335008 907625 ~ 907779 (-)
LOC117596427 NA other upstream 25736 1276278 ~ 1317636 (-)
LOC117596459 NA other upstream 207290 1457832 ~ 1462070 (-)
LOC113524069 LOC108261293,LOC108261210 other upstream 211577 1462119 ~ 1516314 (-)
st13 st13,f10a1 other upstream 315253 1565795 ~ 1591734 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other upstream 479548 1730090 ~ 1881058 (-)

Expression


Co-expression Network