LOC113525089 (LOC108272484)


Basic Information

Item Value
gene id LOC113525089
gene name LOC108272484
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 373143 ~ 399186 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911533.2
CAGAACTGCCTACAAACCTGGAGGCTTCAGTGCTCAGCCACTGAAGCATCTCTAACAGCTGAACCATCACAAGAAGGTATTGAAGAAATGCCTAGAGGCGGATCTGATTCCTCCAGTTTCACTGTTGTGGTGTTTGGAAACACCTCTGCAGTCCACTTTGGAGATGAAAATATACTACTTGGAGCAGAACATGTTCCTCCAGATCAGGCCCACATCCccagaaaaataaaagtgtcaggATGTGCATTGTCAGTGGTCAACATACTGGACTTACATGAAGGTGATCTGTACATGGACCATGTGGACCACATCACTGGTCAGTTAGTTAATGAAAACAACATCCAGTCCTTCATCTTTGTCCTGAAACTGGGACAATTTACAGATGATGATAAAATGGGACTTGAATGGCTGGAAAGAAAATTTGGAGAACATGCTCTTTCCTTTGTGATGATTCTGTTCACTTACGAGGGAGAGGAGTGTGACACCATCATAGATGACCTGAAGAACAACACTGTTCTAGAGCAACTGATAAAGAGGTGTGGAGACAGATACTGCACATGCAGCAAGAGCATGAACAACCGATCAGAAATGAGAACACTGCTGGAGAAGATTGATGATCTCTTCTCTGAGAACAATCAGCGCTGCTACACTGCTGAGAACTACAACACAGAATTAAAGTTTAAAGAACACCAGCAAGACACGGGGAGGCAGAAAGATGGAATGAAGTATAAGCTTAAAACTGCTGAGGAGACTGAAATCATGACAGATCAAGATCCAGAAGAAGAAATGGACACCCAACCAGTGACTAAGAACCTCTCTGACAAAGAAGAAATCCGCAATCCATCAGACTCTAGAACGAGGAGAAGGAATAGTATGAGCCCACCTCCTGCAATGTCTGCACTGAGAATTATTTTGTTGGGGAAAAGTCTCTCAGAGACCAGCAGAGTGGGAAACTTCATCCTGAGAAGAGAAGCATTTAAGACTGAAGATCCTCCACATTCAGCAGTGCAGCACAGTATCAGAGTGAACAGACGTGTGAAGAAAAGATACATCTCCATCATTAACACACCTCATCTCTTTCACTCGCGACTCTCCCATGAGGAGCTGAGTCAGAGAATAAAAGAGTGTATTTCACTTTGTGAACCTGGACCTCATGCATTTTTACTTGTGGTGCAGCCTCAAGACTTTACAGAAGAGGACAGAAAGCGACTGATATACATCCTGAACTCCTTCAGTGAGCGAGCcataaaatactgtattttgaTCAGGACAGAGAAAACCCTTAAACCTTTACTTCAGAAGCAAGAGAATGATGCTTATCACAGATTAAGGAAGGAATTCAATGTGAGGTACATTTTGAAAGAGTTATTGCAGAATGAGGAGGAATCAGTTGATCAGCTCTTTGAGAAGATTGATAaaattgttaaagaaaatggAGGAGTTCATTTGACATGTGAAGTTTTTGAGAATGTAGAAGAAGAATCTCACAAAtctgcgagagagagagggaaggaaacTCAAGACTTACctgaagacagaaaaaagaagagcaTGTGGGGTATAATGGGAAGTGTTGTACAAAGAGGGATTTCAGCGCTGCAACCAACAGAGAGGAGCATCAAAGAACAGTCTACAAAGATGTCAGGAAGTTCTTCTTCATTGCCAGAGTTGAACTTGGTGTTGTGTGGAAGTGATGGAGCTCTGAAGGCCTCTATATCAGAGCTCCTACTGGGACAGAGAGGACAGACAGTAGAGtccagctcagtgtgtgtgataaggAAAGGAGAAGTGCGTGGACACCTGATCAGGCTGGTGGAGATGCCTGCTCTCTACACTCAGCTCTCAGAACAGAAAGTGATGCGTCAGACTCTAcactttgtctctgtctgtgatcCTGGAGTTCATGCTTTCATCATCATTCTTCCTGTTGGTCCTCTAGCTAATGAAGATAAAGCAGAAATACAGATGATTCAGAGGATCTTTGGCTCCAGAGTTAATGACCACACTGTAGTCCTTTTCACCAACCCGTATGACAATGATGAAGCTGCAGCTAAATTTGTAGAGCAAAGTTCAGAGACAGAACAACTTCTCAGCATGTGTGGAGGAAGATATATAATCCTGAAGAAGAGTTTAAAGCATGACAGCCTCAAAAAAGTGCCGGCACTGTTGCGTCATGTCACAGAGATGGTGACTGTGAACAAGCTTTATTCTCTCCTGATGTATGTTGAAGCACAGAAAGATGGAGTTAAACAGGTGCTAGAGAAAAGACTGGCTGAAATGGAGAAGACAATCCAGCAACTTAAGACAAAACAACAGCAAGAATGTGCTGAGGCGGAAGCATCAGATCCCAGCTGTCTGAGAATAGTGTTGATTGGGAAAACAGGAAATGGAAAGAGTGCCTCAGGAAACACCATCCTAGGAAGAAAAGAATTCCACTGCAATGTCAGCATGACCTCTGTGACAAAAATCTGCCAGAAGGGAGTTGGAGATGTTCAGGGCAAACCTGTTGCTATTGTTGACACTCCAGGCCTCTTTGACACCACACTAACAAACGAAGAAACAACAGAAGAAATTGTGAAATGCATCTCACTGTCAGCACCTGGACCTCATGTGTTCCTCATTGTGTTGAGTGTGGGAAGAATTACAGAGGAAGAGATGGAAACACTGAATCTGATCAAGACAATGTTTGGTGCTGAGGCTGCTAAATACAGCATAGTGCTGTTTACCAGAGGAGACGATCTGGAAGATCAGACACTTGAAGATTTTGTCAATAGTAGTGGCCATGCAGGTGTTTTAAAGCTAATCCGGGACTGTGGTGGAAGAGTTCATGTGTTtaataacaaagaaaagaaagatcgCACCCAAGTCTATGACCTTCTGAGAAAGATTGAAGAAATGATTGAATTTGACAGAAACAATTACTTTACAAATGAGATGTTTGAGATGGCGGAGATGTCAATACAGCAGAAACAGCAGGAGATACTGAAGGAGAAAGAGGAACAGATGCAGGCTGAAAAGGAGGCACTGGAGGCTAAACATAAGGAAGAACTGGAGCAGATGAAGAGGAgtctggagaaagagagagaacagttgGAAGAGGAAAGACTGAAAAGGGAAAACATgtttaaagagaaagaagaatctTTAAAACAAGAGtatgagaagaaagaagaagaagagagagagagacggagagtgGAGGATCAGAGAAGGgcagaagaggaaaaagagcaaAAGGCAAAGAGGGATCGCCAGTTGGaggaaataagaaaagaaatggaagatcaaaaaaataaatttctcaaACAGCAAGCTGAAAGAgatgaggaagagagaaagagggcagagagagatagaaaagatAAAGAACGTTTTGAACATGAACAGAGGCAAGCAATGGAAGAATTAAAGAACAAGCAGAAAGAAGAgattaaaaagagagaagaggaagaacaaatgagaagaaagaaacaagaagaagagaTGGAACATTGGAAGAGAAAAATTAAGGAGGcagaaaacagtaaaaaagagataaaagaaGATATTGAAAGAAAACTGCAAGAACAAGAGCTGGAATGGAAGGAACAgataagaaaaagagaagaagaatacaggagaacaaaagagagacacgagaaagaacagagagaacaggaaGAAAACCAGGAACAAATGAGGAAACATTTTGAAAGGGAAAGAGACGAAGACAGActtcaaagagaaaaagaaagagaacaatggaaagagagagaaaggagggagagagatcagagaaagagagagtatgaagaaagcaaattaaaaataaagaaagagtatgaggaactggaaaaaaatagaaaggaaGAGTGGGAGAGAAGAACCTATGAGGAcaatgagagaagagaagaggagagaaggaaTCTTCAGAAACGGAgagaagagatagagagagagaggaaagaggaaatggaaagaagaaaaagagaagaaaaagtcagaaaagaaagagaagataGAGAACGAGTGGAAATGAAAAAGCAGTAtgaggaaaaggagaaagaaatgaagaacaaaTATGAAACTGGGGCTAGAAGACAAGCTGAACAGTTTAATGATATAAAAGCTCAACTTGAAAAACGCATAGAAGAACTGATTACAAAGAATCAAAAGGATTATGACCTTCTCAATGAGCTTCACCGCAACGCACAATCAGTGTTACACAGCACAAAATCAGAGCAAGACAGCATGAAATCAGAGCTACACAGCATAAAATCAGAGCTAGACAGCACAAAATCAGAGCTAGACAGCATACAATCAGAGCTAGATAAGCTTAAAGAAAAGGGTCGTTGTGTTATTTTCTGAAAGTATTTACAGGATTTATATCACACATAAACTGAATATTGTTTGTACCCTTTAACAGAGATAAATCTTCCTCTTTACAACCTGTTGTATCTAAGCTTTCGATACAACCTGTTTGATTTCCTCTGTTCTCACTCTGTTATCATAAACGCTAATGTTATTATGTtaaactgatcattttaaaatatggaGAAAGGAATTAACTATAGTCTTTACTGCATGTATGTAACGTTagcaaaaatgtaataaagggCAGTGGTGGGGGTCCGTGTACTTTTTTGCAttcattcaaaatgaaaaaactaattttttaTGGTTTCAAAATGGGATAATTAACATGTTAAAGaataattgttcattttttaaaatattggaaatataaattcaagattatctcttttctctttgttatttattaaattaatttgcagaaatcataaaatacaaaaatgtaaatgtaataaagaaaatattgatTATGTGAATTCTCCAGGTTGGGCCTGTGGGCTGGCTGTTGTGACCTGAAAGTAATTTAGGCCCCTAAAATTATGATGCATAACATTAAACCACTT
>XM_034301540.1
CAGAACTGCCTACAAACCTGGAGGCTTCAGTGCTCAGCCACTGAAGCATCTCTAACAGCTGAACCATCACAAGAAGGTATTGAAGAAATGCCTAGAGGCGGATCTGATTCCTCCAGTTTCACTGTTGTGGTGTTTGGAAACACCTCTGCAGTCCACTTTGGAGATGAAAATATACTACTTGGAGCAGAACATGTTCCTCCAGATCAGGCCCACATCCccagaaaaataaaagtgtcaggATGTGCATTGTCAGTGGTCAACATACTGGACTTACATGAAGGTGATCTGTACATGGACCATGTGGACCACATCACTGGTCAGTTAGTTAATGAAAACAACATCCAGTCCTTCATCTTTGTCCTGAAACTGGGACAATTTACAGATGATGATAAAATGGGACTTGAATGGCTGGAAAGAAAATTTGGAGAACATGCTCTTTCCTTTGTGATGATTCTGTTCACTTACGAGGGAGAGGAGTGTGACACCATCATAGATGACCTGAAGAACAACACTGTTCTAGAGCAACTGATAAAGAGGTGTGGAGACAGATACTGCACATGCAGCAAGAGCATGAACAACCGATCAGAAATGAGAACACTGCTGGAGAAGATTGATGATCTCTTCTCTGAGAACAATCAGCGCTGCTACACTGCTGAGAACTACAACACAGAATTAAAGTTTAAAGAACACCAGCAAGACACGGGGAGGCAGAAAGATGGAATGAAGTATAAGCTTAAAACTGCTGAGGAGACTGAAATCATGACAGATCAAGATCCAGAAGAAGAAATGGACACCCAACCAGTGACTAAGAACCTCTCTGACAAAGAAGAAATCCGCAATCCATCAGACTCTAGAACGAGGAGAAGGAATAGTATGAGCCCACCTCCTGCAATGTCTGCACTGAGAATTATTTTGTTGGGGAAAAGTCTCTCAGAGACCAGCAGAGTGGGAAACTTCATCCTGAGAAGAGAAGCATTTAAGACTGAAGATCCTCCACATTCAGCAGTGCAGCACAGTATCAGAGTGAACAGACGTGTGAAGAAAAGATACATCTCCATCATTAACACACCTCATCTCTTTCACTCGCGACTCTCCCATGAGGAGCTGAGTCAGAGAATAAAAGAGTGTATTTCACTTTGTGAACCTGGACCTCATGCATTTTTACTTGTGGTGCAGCCTCAAGACTTTACAGAAGAGGACAGAAAGCGACTGATATACATCCTGAACTCCTTCAGTGAGCGAGCcataaaatactgtattttgaTCAGGACAGAGAAAACCCTTAAACCTTTACTTCAGAAGCAAGAGAATGATGCTTATCACAGATTAAGGAAGGAATTCAATGTGAGGTACATTTTGAAAGAGTTATTGCAGAATGAGGAGGAATCAGTTGATCAGCTCTTTGAGAAGATTGATAaaattgttaaagaaaatggAGGAGTTCATTTGACATGTGAAGTTTTTGAGAATGTAGAAGAAGAATCTCACAAAtctgcgagagagagagggaaggaaacTCAAGACTTACctgaagacagaaaaaagaagagcaTGTGGGGTATAATGGGAAGTGTTGTACAAAGAGGGATTTCAGCGCTGCAACCAACAGAGAGGAGCATCAAAGAACAGTCTACAAAGAAGTGGGCAGCCCCTGTCATGCCTTTGTTGAAGCCAGATGGATCCGTGAGACTCCGTGGAGACTATAGACTGACTGTGAACCTGGAATCATCATTGGAGCAGTATCCCATTCCCCGAATGGAGGACATGTTTGCAGTGCTATCTGGAGTGTCAGGAAGTTCTTCTTCATTGCCAGAGTTGAACTTGGTGTTGTGTGGAAGTGATGGAGCTCTGAAGGCCTCTATATCAGAGCTCCTACTGGGACAGAGAGGACAGACAGTAGAGtccagctcagtgtgtgtgataaggAAAGGAGAAGTGCGTGGACACCTGATCAGGCTGGTGGAGATGCCTGCTCTCTACACTCAGCTCTCAGAACAGAAAGTGATGCGTCAGACTCTAcactttgtctctgtctgtgatcCTGGAGTTCATGCTTTCATCATCATTCTTCCTGTTGGTCCTCTAGCTAATGAAGATAAAGCAGAAATACAGATGATTCAGAGGATCTTTGGCTCCAGAGTTAATGACCACACTGTAGTCCTTTTCACCAACCCGTATGACAATGATGAAGCTGCAGCTAAATTTGTAGAGCAAAGTTCAGAGACAGAACAACTTCTCAGCATGTGTGGAGGAAGATATATAATCCTGAAGAAGAGTTTAAAGCATGACAGCCTCAAAAAAGTGCCGGCACTGTTGCGTCATGTCACAGAGATGGTGACTGTGAACAAGCTTTATTCTCTCCTGATGTATGTTGAAGCACAGAAAGATGGAGTTAAACAGGTGCTAGAGAAAAGACTGGCTGAAATGGAGAAGACAATCCAGCAACTTAAGACAAAACAACAGCAAGAATGTGCTGAGGCGGAAGCATCAGATCCCAGCTGTCTGAGAATAGTGTTGATTGGGAAAACAGGAAATGGAAAGAGTGCCTCAGGAAACACCATCCTAGGAAGAAAAGAATTCCACTGCAATGTCAGCATGACCTCTGTGACAAAAATCTGCCAGAAGGGAGTTGGAGATGTTCAGGGCAAACCTGTTGCTATTGTTGACACTCCAGGCCTCTTTGACACCACACTAACAAACGAAGAAACAACAGAAGAAATTGTGAAATGCATCTCACTGTCAGCACCTGGACCTCATGTGTTCCTCATTGTGTTGAGTGTGGGAAGAATTACAGAGGAAGAGATGGAAACACTGAATCTGATCAAGACAATGTTTGGTGCTGAGGCTGCTAAATACAGCATAGTGCTGTTTACCAGAGGAGACGATCTGGAAGATCAGACACTTGAAGATTTTGTCAATAGTAGTGGCCATGCAGGTGTTTTAAAGCTAATCCGGGACTGTGGTGGAAGAGTTCATGTGTTtaataacaaagaaaagaaagatcgCACCCAAGTCTATGACCTTCTGAGAAAGATTGAAGAAATGATTGAATTTGACAGAAACAATTACTTTACAAATGAGATGTTTGAGATGGCGGAGATGTCAATACAGCAGAAACAGCAGGAGATACTGAAGGAGAAAGAGGAACAGATGCAGGCTGAAAAGGAGGCACTGGAGGCTAAACATAAGGAAGAACTGGAGCAGATGAAGAGGAgtctggagaaagagagagaacagttgGAAGAGGAAAGACTGAAAAGGGAAAACATgtttaaagagaaagaagaatctTTAAAACAAGAGtatgagaagaaagaagaagaagagagagagagacggagagtgGAGGATCAGAGAAGGgcagaagaggaaaaagagcaaAAGGCAAAGAGGGATCGCCAGTTGGaggaaataagaaaagaaatggaagatcaaaaaaataaatttctcaaACAGCAAGCTGAAAGAgatgaggaagagagaaagagggcagagagagatagaaaagatAAAGAACGTTTTGAACATGAACAGAGGCAAGCAATGGAAGAATTAAAGAACAAGCAGAAAGAAGAgattaaaaagagagaagaggaagaacaaatgagaagaaagaaacaagaagaagagaTGGAACATTGGAAGAGAAAAATTAAGGAGGcagaaaacagtaaaaaagagataaaagaaGATATTGAAAGAAAACTGCAAGAACAAGAGCTGGAATGGAAGGAACAgataagaaaaagagaagaagaatacaggagaacaaaagagagacacgagaaagaacagagagaacaggaaGAAAACCAGGAACAAATGAGGAAACATTTTGAAAGGGAAAGAGACGAAGACAGActtcaaagagaaaaagaaagagaacaatggaaagagagagaaaggagggagagagatcagagaaagagagagtatgaagaaagcaaattaaaaataaagaaagagtatgaggaactggaaaaaaatagaaaggaaGAGTGGGAGAGAAGAACCTATGAGGAcaatgagagaagagaagaggagagaaggaaTCTTCAGAAACGGAgagaagagatagagagagagaggaaagaggaaatggaaagaagaaaaagagaagaaaaagtcagaaaagaaagagaagataGAGAACGAGTGGAAATGAAAAAGCAGTAtgaggaaaaggagaaagaaatgaagaacaaaTATGAAACTGGGGCTAGAAGACAAGCTGAACAGTTTAATGATATAAAAGCTCAACTTGAAAAACGCATAGAAGAACTGATTACAAAGAATCAAAAGGATTATGACCTTCTCAATGAGCTTCACCGCAACGCACAATCAGTGTTACACAGCACAAAATCAGAGCAAGACAGCATGAAATCAGAGCTACACAGCATAAAATCAGAGCTAGACAGCACAAAATCAGAGCTAGACAGCATACAATCAGAGCTAGATAAGCTTAAAGAAAAGGGTCGTTGTGTTATTTTCTGAAAGTATTTACAGGATTTATATCACACATAAACTGAATATTGTTTGTACCCTTTAACAGAGATAAATCTTCCTCTTTACAACCTGTTGTATCTAAGCTTTCGATACAACCTGTTTGATTTCCTCTGTTCTCACTCTGTTATCATAAACGCTAATGTTATTATGTtaaactgatcattttaaaatatggaGAAAGGAATTAACTATAGTCTTTACTGCATGTATGTAACGTTagcaaaaatgtaataaagggCAGTGGTGGGGGTCCGTGTACTTTTTTGCAttcattcaaaatgaaaaaactaattttttaTGGTTTCAAAATGGGATAATTAACATGTTAAAGaataattgttcattttttaaaatattggaaatataaattcaagattatctcttttctctttgttatttattaaattaatttgcagaaatcataaaatacaaaaatgtaaatgtaataaagaaaatattgatTATGTGAATTCTCCAGGTTGGGCCTGTGGGCTGGCTGTTGTGACCTGAAAGTAATTTAGGCCCCTAAAATTATGATGCATAACATTAAACCACTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911533.2 False 4916 mRNA 0.40 8 373143 399186
XM_034301540.1 True 5063 mRNA 0.40 9 373143 399186

Neighbor

gene id symbol gene type direction distance location
LOC113525087 LOC108272484 coding downstream 22574 341071 ~ 350569 (-)
LOC113525084 LOC108272484 coding downstream 33794 328861 ~ 339349 (-)
plbd1 plbd1 coding downstream 62907 298761 ~ 310236 (-)
LOC117596420 NA coding downstream 86006 146928 ~ 287137 (-)
LOC117596421 NA coding downstream 256376 79388 ~ 116767 (-)
LOC113525088 LOC108272487,LOC108272485,LOC108272486 coding upstream 18831 418017 ~ 459183 (-)
LOC113525090 NA coding upstream 129075 528261 ~ 561037 (-)
LOC113525082 LOC108272487,LOC108272486 coding upstream 172515 571701 ~ 588652 (-)
LOC113547081 NA coding upstream 244862 644048 ~ 645951 (-)
LOC117595703 LOC108272505,LOC108272504 coding upstream 253312 652498 ~ 661063 (-)
trnar-ccu_18 NA non-coding downstream 62488 310583 ~ 310655 (-)
G398158 NA non-coding downstream 65734 307118 ~ 307409 (-)
LOC117596423 NA non-coding downstream 67270 305073 ~ 305873 (-)
G398140 NA non-coding downstream 180010 169832 ~ 193133 (-)
G398135 LOC107387363 non-coding downstream 265368 107329 ~ 107775 (-)
LOC117596419 NA non-coding upstream 15279 414465 ~ 417319 (-)
G398304 NA non-coding upstream 195932 595118 ~ 595989 (-)
G398338 NA non-coding upstream 243216 642402 ~ 644009 (-)
G398393 NA non-coding upstream 442750 841936 ~ 846790 (-)
G398394 NA non-coding upstream 448559 847745 ~ 848753 (-)
pick1 pick1 other downstream 47598 312408 ~ 325545 (-)
LOC117596396 NA other upstream 74564 473750 ~ 482008 (-)
LOC117596444 smdt1 other upstream 341057 740243 ~ 890302 (-)
fam234b fam234b other upstream 492734 891920 ~ 906375 (-)
LOC117596481 NA other upstream 508439 907625 ~ 907779 (-)
LOC117596482 NA other upstream 510883 910069 ~ 910223 (-)

Expression


Co-expression Network