LOC113525090


Basic Information

Item Value
gene id LOC113525090
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 528261 ~ 561037 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911534.2
TTTCCTGCAAACCCAGAGCCTCAACTGCTCAGACTTCTAGAAACAAAGGAATGTTTATGGTCAGAAAATGAATACAGTCCTGAGAAATTGGTAAATAAAGAGCAGAAGAATGGCCTCCAGTATCGAAAGAGTGTCAGAGCTGAGGATAATTCTGTTGGGGAAAAGTGTCTCACAGACCAGCAGTGTGGGAAACTTCATCCTGGGAAAATCTGTGTTTGAGACTGTAGATCCTTCACATTCAGTAGAGGTTCACAGTGAGAGAGTTAGAGGACCAGTGGAGGAAAGAATCATCACAATCAACACACCCCATCTCTACAACCCACAGCTCTCTCAGGAGGAACTGAGTCGGAGAGTAAAAGAGAGCATTTCAATCTCAAAACCTGGACCTCATGCATTTTTACTTGTGGTGCAGTCTACCAATTTTAAAGAGGAGGACAGAACCCGAATGAAATCCATCCTGAGCTCCTTCAGTGATCAAGCTATAAATTACACCATTGTGATAAACATAGAAAGAGGGTTTTATAAGTCAGTTTTTGAAGGAAAGTACACAGCTTTTCACAGGTTAACAGATGAATGTCATAGGAGGCTTCAGAGTTTTCCACGGTTACATGAATCGAACAAGGGCTCAGTTTGTCAACTGTTTGAGAATATTGACCAAATGGTGAAGGATAATGGAGGAGGACACcttgtgtgtgagatttttgaGGATGCACAGCAGTCTTTTAAACATTATGGCAAACCTGCAACAGggataaagaaaagaaatacaccttttactgaagataaaacCAAGACAAAACAATTAAATGTAACAGGACTTTTTAAAAGAACAAATGCACCAGAAATGTGGAGGAGCAAAAGAAGGAGCACATGCCCACCTCCTGTAGTGGCTGTTCTGAGAGTTGTTCTGTTGGGGAAAGGTCTCTCACAGACCAGCAGTGTGGGAAACTTCATCCTGGGAAGATCTGCGTTTGAGACTAAAGATCCACATTCAGTAGCACTTCGTAGTCAGAAAGTTAGTAGATCAATAGAGGGAAGATACATAACCATTATCAACACACCAGATCTCTGTAAACCACAACTCTCTTTGGAGGAACTGACTCAGAGAATAAAAGAGTGTATTTCACTTTCTGAACCTGGAcctcatgcatttttaattgtGGTGCAGCCTCACGACCTTACAGAGGAGGACATAAACCGACTGAGATTCATCCTGAAATCCTTCAGTGATAAAGCAATAAACTACACCATTGTAATAAACATAGAAAGTGAGATTTACAAGTCAGCACATGAAGGAATGTACACAGCTTTTCACAAGTTAACAGATGCATGTCATGGGAGGCATCACATTTTTACACAGTTACATGCAGGAAACAAGGACTCAGTTTGTCAGCTGTTTGCGAAGATCGACCAAATGGTTGCTGATAATGGGGGAGAACACCTTGTTTATCAGATTTCTGAGAATGTAGAGAACACTTTGAAACCTGATGGTGTACCTACAACAAAGGAACAGAAAAGTACTATAGGTTTTCCTGATGACCAAATCAagacaaacaaattaaatgtaacaggAAGTGTTAAAAGAACAGaatTAAAACAGGATCCAACTTTGAAAATGGTGCTGCTTGGGAGGGAAGAAGAAATAAAGGCTTCAGTATCTAAACTGTTCAGAGGTAAAAAGACTTCACAGGTCCAAAAAGATTCAGAGTCCAGCTCAGAGTGTGTGATAAGCAAAGGAGAAGTGAGTGGACACCTGATCACGCTGGTGGAGATGCCCGCTCTCTGCAAGACTCGGCTCTCAGAAGAGGAAGTGATGCGTCAGACTCTacactgtgtctctgtctgcgATCCTGGAGTTCATGCTTTCTTCCTCATCGTTCCTGAAGGTCCTCTCACTGATGAAGATAAATCAGAAATAGAGATGTTTCAGAGGATCTTCAGCTCCAGAGTTAATAATCACACCATCTTCCTCATCAACCAGCAGTCCCAGAGGGAACAGATCGACGAAGTTCTTCAGTCTGTGATAAAGGCATATGGAGGACAATATAAATTCTACAGCAGCAGAACAAATGCAGCAGAACTGATTACGTGTGTGAAGGATCTTCTTAAAAAGAACAGCGGTAGTCAGTACACCATGGCCATGTACTCTGATGCCCAGTTTGAAACACAGCTGCAGTACAAAAGAGAAATTGAAAAACTGCAACAACGAATTAAAGAGCTCAAGATGAGAAACAGTGATCAAACACAAGATTTAACAGAAAGCCCTGACACACTCAGAATTGTGTTGCTGGGGAAGACTGGAGTTGGAAAGAGTGCAACAGGAAACACCATTCTGGGGAGAGACACTTTTACTGAAGACTTGTCTGATCAGTCAGTAACCATTGTGTGTCAGAAAGAGACAGTAGAAAACAATGGAAGACAGATTACTGTGATTGACACTCCAGGACTGTTTGACACAAATACTGATAATGATGAAACCAGGAAAGAGATTGTTAAATGCATCTCCATGGCAGCACCTGGTCCTCATGTGTTCCTGCTGGTGCTGAAAATAGGACAACGCTTcacagaggaggagagagaggcagtgagaATCATTGAAAAGACGTTTGgtgaaaaatctaaaatgtacaCTATTGTTCTGTTCAGTGGAGGTGATTTACTTAAAGGAACTACAATTGAACAGTACATGGAAAATGCTGGGACATGGTTAAAGAGGCTTGTATCAGAGTTTGGTAACAGATATCACATGCTTAATAACAATGATAAACACAGAAACCCACGAGCCCAAGTCCTGACTCTCCTGGATAAGATCGACTCAATGGTGAGAGCGAATGGAGGAAGCTGCTATACTAATGAGATGTTCCAGGAGGTAGAGAAAGCtctagaaaaagaaaaggagagaataCTAAAGGAGATAGAGGagcagatacagagagagaaagaagaactgAAAGACAAACATAAAGCTGAAATAGAGAAATTGCAGAAGGCAATGGAAGAAGaacaacagaaaagagaaagtgagagaaaaagcagAGAGGAGGaatttaaagaaagagaaaagaaactcaGACAGGAGATGGCAGAAAGAGAACGATCAGAAAGAGAATATTATGAGAGAAGGATGAAGGAAAAGATggaagaaataaacagagagagagaggagaacaggAAACAGTgggagaaacaaagagaggAAGATCAAAAACGGCGAgatcaggaggaggaggaaagaaagaggagagaacaAGAATGGAAGAAGCAACAGatggaggagaaagagaagttTAAAAGAGAACAAGaagagatgaaaaagaaagaaaaagaagaattaaagaaattacAACAGGAGTATGAACAGAAGGTAGCAGAGGAAGACAGGAGAAGAAGGGatttagaggaaaaaataaaatatgcagagaaaagtaaaaagaagGAACTACTAGATCTTCAGTTATCTCAACAACGACAGTGGGAGAGGAggatgaaggaggaggaggagaggagaaaaaaacaggaaatttgGTGGAAGGAAAAAATGGAATCTAAGGAAAGATTCTGGCAGATtgaacaagataaaaaaaaaaaaaacagcatgaactAGACAAAAAAGC

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911534.2 True 3614 mRNA 0.41 7 528261 561037

Neighbor

gene id symbol gene type direction distance location
LOC113525088 LOC108272487,LOC108272485,LOC108272486 coding downstream 69078 418017 ~ 459183 (-)
LOC113525089 LOC108272484 coding downstream 129075 373143 ~ 399186 (-)
LOC113525087 LOC108272484 coding downstream 177692 341071 ~ 350569 (-)
LOC113525084 LOC108272484 coding downstream 188912 328861 ~ 339349 (-)
plbd1 plbd1 coding downstream 218025 298761 ~ 310236 (-)
LOC113525082 LOC108272487,LOC108272486 coding upstream 10664 571701 ~ 588652 (-)
LOC113547081 NA coding upstream 83011 644048 ~ 645951 (-)
LOC117595703 LOC108272505,LOC108272504 coding upstream 91461 652498 ~ 661063 (-)
sox10 sox10 coding upstream 116866 677903 ~ 692387 (-)
LOC113541895 kcnj4 coding upstream 165913 726950 ~ 734134 (-)
LOC117596419 NA non-coding downstream 110942 414465 ~ 417319 (-)
trnar-ccu_18 NA non-coding downstream 217606 310583 ~ 310655 (-)
G398158 NA non-coding downstream 220852 307118 ~ 307409 (-)
LOC117596423 NA non-coding downstream 222388 305073 ~ 305873 (-)
G398140 NA non-coding downstream 335128 169832 ~ 193133 (-)
G398304 NA non-coding upstream 34081 595118 ~ 595989 (-)
G398338 NA non-coding upstream 81365 642402 ~ 644009 (-)
G398393 NA non-coding upstream 280899 841936 ~ 846790 (-)
G398394 NA non-coding upstream 286708 847745 ~ 848753 (-)
G398395 NA non-coding upstream 289413 850450 ~ 851339 (-)
LOC117596396 NA other downstream 46253 473750 ~ 482008 (-)
pick1 pick1 other downstream 202716 312408 ~ 325545 (-)
LOC117596444 smdt1 other upstream 179206 740243 ~ 890302 (-)
fam234b fam234b other upstream 330883 891920 ~ 906375 (-)
LOC117596481 NA other upstream 346588 907625 ~ 907779 (-)
LOC117596482 NA other upstream 349032 910069 ~ 910223 (-)
LOC113536357 NA other upstream 353161 914198 ~ 914352 (-)

Expression


Co-expression Network