jpt1b (hn1)


Basic Information

Item Value
gene id jpt1b
gene name hn1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3206908 ~ 3222780 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911562.2
ACTCGAGCAAAACGGCTGCCCAGATTCCCTATTCATCCCGAGTCGGGCGGAGTCCATGCGGAGGGGAGCTACAGCACATTTTAGACGTTTTAGTGGCTAGATTTAGCTTTAAACGCTTTGAAGAGCAGGTTTATTCACTCCGTTTAATCCTGCCCGAGATGACAACGACGACCACTTTTCAAGGGATGGACCCTAGCGCGAAAAATAGCTccagGGTTCTGCGGCCTCCCGGCGGAAACTCCAACATTTGCTTCGGCACAGATGAGGAAAGGCCGGCGCGCAAGAACAGAATGGCCTCCAACATCTTCGCTGAGCCCGAGGACCCCCATGCCCATCGGAGGAACAACCCAcctgGTGGTGAAGCGAGCGGAGTGCTGTGTGGCGAACACTCCGCCCCACTGAGGCGGTGCCACCAGCCGCCAATCTACCTAAACAACTCTGAACACCCGGGCAAACCCACGGAGGAAAACCACGAGCAAGTAAATCATGatcAGTCAGAGGAAATGGAAGCCCCTGAGGAAGagcctcagcagcagcaacagcagaaggaggaggagcagaaacagCCCTCTGGTGCCTCCTCTGGCCGAAGAAACCCTCCTGGTGGAAAATCCAGCCTCATTCTGGGCTGAGCGCGCTcactgaacactctctctctctctctctctctctctctctctttctttctttttttaaagattcactctctcttcactctctcactctcatcaTGTGAGCCAtgggatgattttttttttctttttgtccacTACCACATGTCTGTATTATTGTTTTTCTAtcgcaaaaaaaagaaaagaaaatgaaagaaaagctgGTTGGCAGAAGCACTTTATGTAAAAGCTCCATTTCAGCCCATCATGAAGAGCGCAGGCCGTGCAGGGGGGAAGCATGGAAGGCAAAGCAAGGAAAAGATTCGTCGCGCTAAATTtctaaatacaaataaagattgATATGAA

Function

NR:

description
PREDICTED: hematological and neurological expressed 1 protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911562.2 True 977 mRNA 0.50 5 3206908 3222780

Neighbor

gene id symbol gene type direction distance location
LOC117595704 NA coding downstream 18821 3178517 ~ 3188087 (-)
trnay-gua_7 NA coding downstream 37487 3169334 ~ 3169421 (-)
si:ch211-108d22.2 LOC108272973 coding downstream 94656 3079234 ~ 3112252 (-)
LOC113523961 LOC108272987,LOC106591917 coding downstream 127679 2914034 ~ 3079229 (-)
LOC113523971 LOC108272994 coding downstream 682729 2517791 ~ 2524179 (-)
LOC113534415 LOC108272862,LOC108272567,LOC100526730,LOC108272468,LOC108261103,LOC108280065,LOC108272463,LOC108279536 coding upstream 27306 3250086 ~ 3293868 (-)
gga3b gga3,LOC106606567 coding upstream 73139 3295919 ~ 3309397 (-)
trnae-cuc_42 NA coding upstream 88581 3311361 ~ 3311432 (-)
evplb LOC108272806 coding upstream 159334 3382114 ~ 3403530 (-)
atg4db LOC108272831 coding upstream 196600 3419380 ~ 3427527 (-)
G399507 NA non-coding downstream 6157 3182972 ~ 3200751 (-)
G399537 NA non-coding downstream 12000 3185836 ~ 3194908 (-)
G399532 NA non-coding downstream 38305 3167877 ~ 3168603 (-)
G399494 NA non-coding downstream 136640 3011867 ~ 3070268 (-)
G399491 NA non-coding downstream 160396 2957236 ~ 3046512 (-)
G399530 NA non-coding upstream 12863 3235643 ~ 3249326 (-)
G399541 NA non-coding upstream 20777 3243557 ~ 3245044 (-)
G399543 NA non-coding upstream 50776 3273556 ~ 3274842 (-)
LOC113534314 NA non-coding upstream 137891 3360671 ~ 3363611 (-)
LOC113534841 NA non-coding upstream 138102 3360882 ~ 3360954 (-)
LOC113525117 NA other downstream 10345 3147299 ~ 3196563 (-)
G399490 nup85,LOC106601803 other downstream 242751 2961713 ~ 2964157 (-)
G399028 NA other downstream 780302 2372296 ~ 2426606 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other downstream 829277 2354909 ~ 2377631 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 1325850 1730090 ~ 1881058 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other upstream 1285 3224065 ~ 3234324 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 897617 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 928119 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 1072436 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 1375020 4597800 ~ 4635057 (-)

Expression


Co-expression Network