atg4db (LOC108272831)


Basic Information

Item Value
gene id atg4db
gene name LOC108272831
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3419380 ~ 3427527 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926985.2
AACAGAGTAAATAGGAAGTGAAGCATAATTCAGAAAGTTTTGGCGTCAGTAATGTTGGAGATGTTCGTCAGGAATCCTCTCAGATTAAAGAATAATGTTTTGTAATATAGATAAATCCATGGTTCTCAGGTTGCCATGGTGAGTGGTTCCAGCATAGCGACATGATGACCTCTGCATGTCCTGATGAGGTGGACTCCACAGAAGACCTGGAGTCATTTGAGTTCCTGTCACACCCCGGACCTTCAGACCACACACACGCCTCAGAGGCAGTGAAGGACAAAGCCAGGCTAAGGAGCCGACTGGTGTCAGCGTGGAACAGTGTGAAGTATGGAGgttggACTCTGAAAGCTAAACCTCGTCTGAGTAAAAACTCTCCTGTGTGTTTGCTGGGTCACACATACCACCTGAGCCATGAAGgtgagaGGCAGCAGTTCCGGTGTGTGTTCTCGTCTCTGTTCTGGATGACGTACAGGAGAGGCTTCTCCTCGCTGCACGAATCGTCTCTGACCTCAGACAGTGGGTGGGGCTGCACGCTGCGCTCCGCCCAGATGCTGCTCGCACAGGCACTAGTGCTACACACACTGCCTGCagGCTGGACGTGGTCTGGAGCTCATCACCAGACCAGAGACGACCTGGAGCTCAGACACTCTCGGCCCCTTGTGCTGGGATTGAGACGGAGTCGGTGGGTGGGGCAGAGGAGGCGGAGCGAGGGTGCCATActggatgaggatgaagatgggCAGGAGAGCGGACATCGGCGTCTGGTGGCGTGGTTCGGGGACACGCCATCTGCTCCGTTCAGCCTGCATCAGCTGGTGGAGTTGGGACGGTCGTCAGGGCAACGGGCAGGTGACTGGTACGGCCCCTCTGTCGCGGCACACATGCTGCGgaagGCAGTAGCAGAGTCTGAAGTGAATGACCTGGCTGTGTATGTTGCACAGGACTGCACTGtgtatgtgggAGATGTGATGAGACTGTGGGAGAATGTCAGTGTGAACTCTCAGCGAGATTTCGCTCTGTTATTATTCCTGGTGCCTGTGAGACTCGGCGGAGACACACTCAACCCTGCGTATGTCCCGTTTGTGAAGAGACTGCTTCAGCTGAAGTGCTGTGTGGGAATAATCGGAGGAAAGCCGAAGCACTCGCTGTACTTCATGGGGTTTCAGGATGATCAGCTGCTGTATTTGGATCCTCATTTCTGTCAGGCTGCTGTAGATATCCATCAGCCCAACTTCCCCTTAGAGTCATTTCACTGTAAGACGGCGAGGAAGCTGCCCTTTCACCGCATGGACCCCAGCTGCACGCTGGGTTTCTACGCTAAGAGCAGGAGGGACTTTGACACACTCCGTGCTGAAGTCACCAAGGCTCTGACCTCGTCCACAGACACGTATCCCATCTTCACCTTTGTGGAGGGCAGTGGGCAAGATCAGCATGAGCAGCTGGAGTTGACCTTTGATGCAGAGGTGCACATCCCACCCAAAGACAAAGGGAGACAAAGGAGTAAGCGGAGCAGCATGGACGAATTTGTGCTGCTGTGAACGCTTGCTCAGTCATAGTAACGTCTGTTCATGGATAATTTACTGAAATCAGactatttatttaaacacacttcTGATCAGGTTTGTACATGTCAGTCACTAGCCCAGGGTTTAGAACCAGCATTTTAGATTCTAAAGTTGACATGCAGTCATCAACCAGCAACTATAAGCTTCCAACTAGTGACTATAAGCTTTTAACTAGTGACTGTAAGCTTTTAACTAGTGACTGTAAGCATCCAACTAAAGACTGTAAGCTCCCAACTAGTGACTGTAAGCTTTTAACTAGAGACTGTAAGCATCCAACTAGCGACTGGAAGCTCCCAACTAGTGACTGTAAGCTTCCAATAATAGtcagctacattagcctcatagcttcagtgtaaaataaagaagaaaaacttgAACATGACTTGGCTGATAGACTAAATTCAGGGTAAGTGAAACAGActgttctttaattaaacacactacaaaaatacaaatctaaGAAGAAAGCACATTGATTTTTTGCAAGACTGATTGAAAATTCTAAATACCAAGAtggcacacgcgcacacacacacacactctttttatCTCATGTTTCAAATGAAACCTTCCAGCCATCCAAGGCTGAGAGTCAAGGGaacaaaattggccatgctctccgGGTGGGAGAGATGCTGTTACTCTCTCCgctgtcagtcacagtaacaCTTGACAATTACGAGCATCTATGAGCTCAtctatgcggaagagggcaaaTAGCGCATTCCTCCTCCCTGTgaagcagcatgagcagcattttgaaaagatgtggttagCTGGCTTCAGAGGAAGCACCTGCTAGccatcaccctccctggttggtagccgtcatatgataggggagagttagCTGGTGGGTGAACACAGTTGGGGGGaaagggggggaaaaatgtgGGCAGAGATTAATACATATGCATCATAAGTATCGCTCATGAGTATCATCGTGTAGAGTAAAGTATCGTGATAtacttttttcagtattttccgTCCCTACATCAGTAAAATCTAAGACATGACATCTATAATCAAAACTGAGCtctattactgtatttttagagttaaattttattcctcactgggtccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataaatatgtgtgtccgatttgtaaaaaaaaaaaaaacttattttggGTTTCATGGCGGTATGTCTCCTTGCCAaccattttgatgttttttttctgttttgattgTGAAGtcaagagtgtgtttgtgtcactacatatttttagatttacctGTAAATAATGACGAAGAAtaatttttgaaataaaaaaatctatatgaataatttttattttttaaaaaatgggatAACCTAGACATTTAGAAGTTGTGTTTCATGTATGTAACTTGTTGTGTAATAAATGGAAGTGAACGTTGTGTGTTGGATGTGAGAAAtgagagtgggtgtgtgtgactCGTTCAGTGTATCACTTGTGAGACAGGAAGCTTCTCCTCACTCGGCTGAAACTGGAGCATCTCAAAAGCATCAGAGAATGATCTGCTGTTCTGTCATGTAGTTAATTGTTTTACACAAACCTGTCTGTCCTGCTGCAGTTAACAGTAAGAAAATCATTTACAGTGGTTGTCTTGTTCCAAATGTGCCCATAGCACTGACCCATAGCACTGTTGCTGCCTTCACGTGCTGTTATAATTACAAGTTACATCAAATTACAAAGTGAGTACACTTGAATGGCACCACAGTGTCGTGGTTACAACTCAGGAACTCATATTTTTCTATGAGCCTCTATTTTCCACGttacaaataacaaaaagtCTTGATGGCCGCCAATGTGAATGTCAAGCCtatgatttgtagtttcacaaATTTGCCAGTCCGTTATGGGAGAAcagttttgaatatcaaaattcctttgataacttttgttcagacaggtctcaagatgatgtgagccaaatttggtggagattggacaaaattcggaggagaagaagcaaaaatggctattagatgtaagcatttttatcATGTTATTGTAACAATGTCATGTTATTGTTTCACCATTgcgaaatttgttgcatagcctc

Function

NR:

description
PREDICTED: cysteine protease ATG4D-like

GO: NA

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926985.2 True 3657 mRNA 0.45 12 3419380 3427527

Neighbor

gene id symbol gene type direction distance location
evplb LOC108272806 coding downstream 15850 3382114 ~ 3403530 (-)
trnae-cuc_42 NA coding downstream 107948 3311361 ~ 3311432 (-)
gga3b gga3,LOC106606567 coding downstream 109983 3295919 ~ 3309397 (-)
LOC113534415 LOC108272862,LOC108272567,LOC100526730,LOC108272468,LOC108261103,LOC108280065,LOC108272463,LOC108279536 coding downstream 125512 3250086 ~ 3293868 (-)
jpt1b hn1 coding downstream 196600 3206908 ~ 3222780 (-)
mast1b mast1,LOC107567212 coding upstream 6201 3433728 ~ 3464801 (-)
junbb LOC108272820 coding upstream 60746 3488273 ~ 3490167 (-)
ubn2b LOC108272810 coding upstream 157747 3585274 ~ 3600490 (-)
LOC113534607 LOC108272840 coding upstream 319955 3747482 ~ 3754120 (-)
si:ch211-106h11.3 LOC108272832,LOC108439110 coding upstream 367332 3794859 ~ 3809349 (-)
LOC113534314 NA non-coding downstream 55769 3360671 ~ 3363611 (-)
LOC113534843 NA non-coding downstream 57554 3361748 ~ 3361826 (-)
LOC113534841 NA non-coding downstream 58426 3360882 ~ 3360954 (-)
G399543 NA non-coding downstream 144538 3273556 ~ 3274842 (-)
G399530 NA non-coding downstream 170054 3235643 ~ 3249326 (-)
LOC117596450 NA non-coding upstream 87285 3514812 ~ 3516233 (-)
G399727 NA non-coding upstream 133621 3561148 ~ 3562361 (-)
G399738 NA non-coding upstream 157374 3584901 ~ 3585214 (-)
G399742 NA non-coding upstream 173519 3601046 ~ 3635560 (-)
G399783 NA non-coding upstream 301412 3728939 ~ 3729385 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 124107 3017290 ~ 3295273 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 185056 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 222817 3147299 ~ 3196563 (-)
G399490 nup85,LOC106601803 other downstream 455223 2961713 ~ 2964157 (-)
G399028 NA other downstream 992774 2372296 ~ 2426606 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 692870 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 723372 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 867689 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 1170273 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 1533575 4961102 ~ 5008464 (-)

Expression


Co-expression Network