LOC113534507 (tob2,LOC107735623)


Basic Information

Item Value
gene id LOC113534507
gene name tob2,LOC107735623
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3993225 ~ 3999563 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927370.2
TAAACTTTCCCTGAGCCGCTATAGGGCGAGTGCGGCGTCCAAACGCGCTTTATAACCACTTATACATGCCaccttttataatttttatatatctcAGTGTCTTATCAGCTTAATAAGGTCGCAGAAACAAATATCCAGCGTCGTGTTTTCAATTCGTGTGTCAGGAAATGtagagataataataatcatcatcataataataataataacaacaatcaCTGATTGGAGAAAGTGGGTCTTGTGAGACGTCCAGGCTTTCCGTAAGCCCAGTGTGGTGTAGCAGGTCAGAGCTTTGTGTATGGGACCAATCAAATCTGGACGTTCTCCACTGAAACGAAAGTTGTTTTTAAGCTGCACACTCTTTACCACCTTCTTCAAGGATTTTTACCCCCCTCTGCATCTTTTACAAGAGATGTGGAAACTGTTGTAGGCCTGTTCTGGCCGGAGAGATTCAGGACTTGAGCATTGTGTTCTGGACCCTTTAATTCTCTCTTCAGCCATGCATTTAGAGGTAAAAGTTGCACTGAACTTCATAGTGTCCTATTTGTACAACAAGCTCCCACGGCGAAGAGCAGACCTTTTCGGAGAGGAGCTGGAACGCATCCTGGTGTCACGTTTTGAAGGTCACTGGTACCCGGAGGCTCCATTACGTGGTTCTGCCTTCCGCTGCCTTCATCTCGGAGTCCCTGGGGACCCCGTGGTGGACTTGGCAGCCAGACGGAGTGGGTTGGACATGGAGGAAGTCCGTGCCAATGTCCCTCCAGAGCTCAGCATCTGGATCGACCCTTATGAAGTGTCCTATCAGATTGGTGAGAAAGGGGCTGTGAAAGTTCTCTACATGGAAGATCCGCCAGGTTTGGGGGGTGAAGCTGAAATATCAGAATGCTTAGGAGGGCTTTGTAAAGGAGATATGGAGCTGGAAGATGGGAAGAATTTGGGCTTCAACCCAGACGCTCAGGTCTTTGTGCCCATTGGTGGCCAGGCATCACCAGTCATGCTTCCATCTCTCTCTAATTCACCCACACCTCTCTGTCAAGGTCTGTTCAGCTACGCAGGCTCCAGTACTCCAGCGGATCCCACTGTGCACTCCAACGCCTCCTCTCCGTCTCCACCCAGTACAGGGATGCCCTACCCACACCCAGCTGCCCAACCTAGCTCCCGTCCTGTTCCACAACAAATCACCTTCACCACGGCCAGCTTTGCTGCCACCAAGTTCGGCTCCACCAAGATGAAGAAATGCATGGGATCCGGGGTGGTGGGTGGATCTGGCAGTGTCGGCGTGCCTCAGCAGCGAATGCTGAGCCGTTCACCCACCGCAATGTCCTCCATTTCACCACCAGGACTGGTGAAGCACAAGCCCCTATCTCTCTCCATGCACTCCCTGGCTGGTCCAGTCTCTAGCCAGCTCTCGCCCAATGCCAAAGAGTTTGTCTACCCTGCCTCGCAGGGGCCTCTTTATTTTGAAGCTGAGGCTCCGCACCTGACCCACGCCGGCCCATTCCAGGCACCGCTTTCAGGCCCTGCTCACCCACATGCCACCTTTGATCCATTATCTAGCCCACCACCAGGCCATGCAATGGGTGTCATGGGAGGCAGCGGTGGAATTTCCTTCATGGAGGGTCTGGGGGGCTACAACCTGCAGTACTCCAGCCAAGCTTTCCAACCTGTAGTATTGGCCAACTAAGTGTTCACAATGCTTAAAAGATGTcttctgggaattttttttatgaatttttccACCAGTTGTTACTAATACATAAAGTTAAGATGGTGTTATGACTACTAAAACcacttatgattttttttttccctccatagATCTTTATTTCTATTCAAGGAtaattcttttcctttctcccaAGCCAATGGGAAATAACCAGCCTCCTGCTGCACAGATGTTTTGCATTGAATGCTAATTTGATCTGGGTGTTCCTCACTAAGGTATAGTTCTCTGTACCCTGGCTGAGCAGCATGAGCTTGTTCCAACACTGCTCTTTCATGCTGTGAAAAAAGCTTCATGCTTCAATTTAATCATGTTGAGAGCAAATATTTTGTTGGAAGGTTCTGGAAAGCAGAGAGGTTGGGACTTTGCTATAAGCTGTCTAGTCAAGCCTCACTGTGGGGGGGGGGGGATATTTTTGTGCCAACACAAATCttgcattgttttttctttttctttttcgttCTGTGGTTTATACGAGTACATAGTCAGGACACAATGCACACTATGGGTATCGGGCCTAGTTTTTGAGAAGTCAAATGGGGTAATGCTTTAAAGCTGTGAAACTGTTCAGGAAGATtgtgttttcatatttaaaagcCATAAATATGGTTCAAAGAGGGGGGAAGTAGTCTAGTTAAAGGCGGTGGCAAGATGACTGTTAACATGGTAGTGTTGGTCTCCTGTAGGAAGACAGAGCCAGCAGTGCGTGAAGGTAAGAGGGCAGGACTCGGGTGGATGGGACTCAATATAGCAGATAGGCTCATGATAAATGATGTGGCTTTGGGAAGGATGGAATGATGGGAATGTGTGTATGGGCAGCTATAACCTTTGGCAGTAGCTCAAAACATGGCACTTGGATTGCTGAGCTTGGTGTCCTTCAGAGTTGAAGTTGGGTTTGGATCACACTATGAATGTGAATCTAATTTCTATCTAAGTGGGTGTTGAGCAGTTAGATGTTAGGATTCTTCTTCGTTATTCTTCATCCTCATCAGAGGTTTAGATGTTTTACATATTAGACACAAAGATCCTGTAATGTCTTAAGAGAATGGATGTTTGTTCTTTATGACCTTTTAATAGCTGACATTACCAAGTCCATTGATCCACAATGAAACTCTTGCAATCATGGAGATGGTTGATAATCTGCCTCGACTGAAAGCTTtctcgatagatagatagatagatatctgCTTAAGCTATAACTACCGAACCATCCTTACTATGTTCCTCATATTACTGTGTCAGTCCATTTCATGACCACCATTTTGAGTGGATTAGTTTATTTTTGGTTGTAAGGGTCCAGAGGTTTGCAATTATGGCTGGTTTAAACTGgatgtatttttttacattcatttgtaatttatttacgatttttctatatttttttcctgtgtgttttttcaagAGAGAATCTAAAGGCATTTGTAAAagatattatataca

Function

symbol description
tob2 Predicted to enable transcription corepressor activity. Predicted to be involved in regulation of gene expression. Predicted to act upstream of or within negative regulation of osteoclast differentiation and positive regulation of ossification. Located in cytosol.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927370.2 True 3163 mRNA 0.45 2 3993225 3999563

Neighbor

gene id symbol gene type direction distance location
rangap1a rangap1,LOC107745514 coding downstream 55587 3927253 ~ 3937638 (-)
LOC113534792 LOC108272837 coding downstream 167721 3822746 ~ 3825504 (-)
si:ch211-106h11.3 LOC108272832,LOC108439110 coding downstream 183876 3794859 ~ 3809349 (-)
LOC113534607 LOC108272840 coding downstream 239105 3747482 ~ 3754120 (-)
ubn2b LOC108272810 coding downstream 392735 3585274 ~ 3600490 (-)
LOC113534503 pmm1,LOC107691086,LOC107672914 coding upstream 43482 4043045 ~ 4059491 (-)
LOC113534511 NA coding upstream 107313 4106876 ~ 4117916 (-)
LOC113534634 LOC108272825 coding upstream 134775 4134338 ~ 4144544 (-)
LOC117596393 LOC108272830 coding upstream 166761 4166324 ~ 4168560 (-)
LOC117596407 NA coding upstream 170907 4170470 ~ 4175154 (-)
G399910 NA non-coding downstream 41828 3881393 ~ 3951397 (-)
G399913 NA non-coding downstream 75110 3916468 ~ 3918115 (-)
G399935 NA non-coding downstream 81878 3910640 ~ 3911347 (-)
G399929 NA non-coding downstream 105517 3885811 ~ 3887708 (-)
G399900 NA non-coding downstream 137595 3815612 ~ 3855630 (-)
G399950 NA non-coding upstream 9504 4009067 ~ 4066280 (-)
G399990 NA non-coding upstream 100534 4100097 ~ 4106327 (-)
G400085 NA non-coding upstream 191178 4190741 ~ 4276482 (-)
G400112 LOC108272813 non-coding upstream 234840 4234403 ~ 4293157 (-)
G400131 NA non-coding upstream 281214 4280777 ~ 4281433 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 697952 3017290 ~ 3295273 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 758901 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 796662 3147299 ~ 3196563 (-)
G399490 nup85,LOC106601803 other downstream 1029068 2961713 ~ 2964157 (-)
G399028 NA other downstream 1566619 2372296 ~ 2426606 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 120834 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 151336 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 295653 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 598237 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 961539 4961102 ~ 5008464 (-)

Expression


Co-expression Network