LOC113534511


Basic Information

Item Value
gene id LOC113534511
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4106876 ~ 4117916 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927374.2
GCAGTCATAAGAGCTTGCAGAATATCTACTCTGATAATCATTTCTAACCACCAACATCCATCTGCGTGAGTGTGCCAGCTGGATTTTTTAGACATTATTTAGCATATTGGAGTCTGGCAGTGAGCAGCCATCACCCTGCAGCTGtgagacacacactaactACGGCTGATGAAGATTAGCAAGGAGTCTGGGAGTGATTCAGACTCGGACTCGGAGCCTTTGAAGCCCAGAACTCGAGGGAGGAAgagcatgatgatgatgagacagAGGTCTGGGAAGAGAAGCAGCAACCTGAACTCATTCTCTCCCCATGCCTCACGTCAGAAGAGATTCAGAAGCAgtCCCACGGTCCGTAAGCAACTGGGAGAGAGCCTCAAAAAGAAACCCAGGCTTGCTGTCACGTGTGGAAATAAAGAAGGCACGCTATACAAAGATAAGTTTAAGAAAAGTGAGCCGTGCATCTGGTCTAATCATAAGTGGTTCACCCCTACTGAATTTGAGAAGTTTGgaggaaaggagaaaaacaaaaagtggaAGATTAGTATCCTGCACAATCAGATTCCGCTGCAAACATTTATACAGGAGGGCTTTCTTCCCTGTCCATCGTTTAAAACGAAGCGCTCACGGGATAAAGAGCCAAAGTGCAGGAGGGAGCTGATTCGGACCAGAAGAAGTACCAGATATGGCAGAAACAGTCACACGTCCGAGTCTGACATCATCTCAGAATTGAGCTCATTGCCCAGCTGCAGCACTgacgatgatgaagatgatgttcAGGTCACTGAGAGAGAGTTCAGCGGCGACTCTTTTGACGTCACGTGTTCCAAAGGGAGAGAGGTTCTGTCCAAAGggacagACAGTCACACGTCCGAGTCTGACATCATCTCAGAATTGAGCTCATTGCCCAGCTGCAGCACTGACgacgatgatgaagatgatgttcAGGTCACTGAGGGAGAGTTCAGCGGCGACTCTTTTGACGTCACATGTTCCAAAGGGAGAGGGGTTCTGCATGTAACCCGCTTtgctacagAGACTTGTGGAAAATGCATCAGGACGCAGGACGCCTGGCTCACGCCCGAGGACTTCCTCAACAAGAACAAACCCGGCGGAAACTGGAGACTGGACATCAGAAGCCACAGTGTTCCTCTTGGAAAGCTCATAATGAGGAGGGTGTTGAAGCCTCACATGTTGAACTGCAAGTGTCCCATCTGCACAGGAGAACCTCTGCATCTGCTGGATCAGAACAATGATGACATGTGCTTTATGTGCAACCGCGATGGAGATCTGGTGTGTTGTGACAAATGTCCACGTGCCTTCCATCATCACTGCCACAAACCAGCTTTAAGGGACGACACAATCGGtgatcACTGGACCTGTTCCTTCTGCAAGAAGTCTGTTCCAGGTGCAAGAAAGAAGAGCTCATGACCCGTCCTGAATGTTTAAACACGACTATCATAGTGACTGTTGGAGTGCGGAATGTTTTCCttttacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggctcaTTTCACTGactagaaaatatatatttttatcatattttttgcATGATACTTTTTGCTGGTGATGGTTGTGAATTATTTACAAATCAaaagtaataaacatattttttttacagta
>XM_026927375.2
cgGAAACATTAACgtgctgtttaatttgttaaaaaaaatctagactCCTTTTGAAAAGAGTTGGAAACTTTGTCGGAATGCAGTAATCTGAAGTGTTTAGTTcctataggaaaaaaaatattcagcactagttttagccacgcccacatgTCCCGGTTCGGTTCGCATGGTACTGGGTAAGCAGTGGAAACCCAGTACTGGTACCTGGACTCAGAgtCCCACGGTCCGTAAGCAACTGGGAGAGAGCCTCAAAAAGAAACCCAGGCTTGCTGTCACGTGTGGAAATAAAGAAGGCACGCTATACAAAGATAAGTTTAAGAAAAGTGAGCCGTGCATCTGGTCTAATCATAAGTGGTTCACCCCTACTGAATTTGAGAAGTTTGgaggaaaggagaaaaacaaaaagtggaAGATTAGTATCCTGCACAATCAGATTCCGCTGCAAACATTTATACAGGAGGGCTTTCTTCCCTGTCCATCGTTTAAAACGAAGCGCTCACGGGATAAAGAGCCAAAGTGCAGGAGGGAGCTGATTCGGACCAGAAGAAGTACCAGATATGGCAGAAACAGTCACACGTCCGAGTCTGACATCATCTCAGAATTGAGCTCATTGCCCAGCTGCAGCACTgacgatgatgaagatgatgttcAGGTCACTGAGAGAGAGTTCAGCGGCGACTCTTTTGACGTCACGTGTTCCAAAGGGAGAGAGGTTCTGTCCAAAGggacagACAGTCACACGTCCGAGTCTGACATCATCTCAGAATTGAGCTCATTGCCCAGCTGCAGCACTGACgacgatgatgaagatgatgttcAGGTCACTGAGGGAGAGTTCAGCGGCGACTCTTTTGACGTCACATGTTCCAAAGGGAGAGGGGTTCTGCATGTAACCCGCTTtgctacagAGACTTGTGGAAAATGCATCAGGACGCAGGACGCCTGGCTCACGCCCGAGGACTTCCTCAACAAGAACAAACCCGGCGGAAACTGGAGACTGGACATCAGAAGCCACAGTGTTCCTCTTGGAAAGCTCATAATGAGGAGGGTGTTGAAGCCTCACATGTTGAACTGCAAGTGTCCCATCTGCACAGGAGAACCTCTGCATCTGCTGGATCAGAACAATGATGACATGTGCTTTATGTGCAACCGCGATGGAGATCTGGTGTGTTGTGACAAATGTCCACGTGCCTTCCATCATCACTGCCACAAACCAGCTTTAAGGGACGACACAATCGGtgatcACTGGACCTGTTCCTTCTGCAAGAAGTCTGTTCCAGGTGCAAGAAAGAAGAGCTCATGACCCGTCCTGAATGTTTAAACACGACTATCATAGTGACTGTTGGAGTGCGGAATGTTTTCCttttacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggctcaTTTCACTGactagaaaatatatatttttatcatattttttgcATGATACTTTTTGCTGGTGATGGTTGTGAATTATTTACAAATCAaaagtaataaacatattttttttacagta
>XM_026927377.2
CTGAGGCTGAATCTCCAATGTCTTTCTACACTACTCCTTAGGGCACTAGGTAGTGCGTTCAGATCCCTTATGTTATACCCGATCTAGGGCGCAAACGAAGTGACTGggaagccattttgaatttttcccTCCGGATGCAAGATGGCGGATTTGACTTGGATCACGGGGAAGAAACgtCCCACGGTCCGTAAGCAACTGGGAGAGAGCCTCAAAAAGAAACCCAGGCTTGCTGTCACGTGTGGAAATAAAGAAGGCACGCTATACAAAGATAAGTTTAAGAAAAGTGAGCCGTGCATCTGGTCTAATCATAAGTGGTTCACCCCTACTGAATTTGAGAAGTTTGgaggaaaggagaaaaacaaaaagtggaAGATTAGTATCCTGCACAATCAGATTCCGCTGCAAACATTTATACAGGAGGGCTTTCTTCCCTGTCCATCGTTTAAAACGAAGCGCTCACGGGATAAAGAGCCAAAGTGCAGGAGGGAGCTGATTCGGACCAGAAGAAGTACCAGATATGGCAGAAACAGTCACACGTCCGAGTCTGACATCATCTCAGAATTGAGCTCATTGCCCAGCTGCAGCACTgacgatgatgaagatgatgttcAGGTCACTGAGAGAGAGTTCAGCGGCGACTCTTTTGACGTCACGTGTTCCAAAGGGAGAGAGGTTCTGTCCAAAGggacagACAGTCACACGTCCGAGTCTGACATCATCTCAGAATTGAGCTCATTGCCCAGCTGCAGCACTGACgacgatgatgaagatgatgttcAGGTCACTGAGGGAGAGTTCAGCGGCGACTCTTTTGACGTCACATGTTCCAAAGGGAGAGGGGTTCTGCATGTAACCCGCTTtgctacagAGACTTGTGGAAAATGCATCAGGACGCAGGACGCCTGGCTCACGCCCGAGGACTTCCTCAACAAGAACAAACCCGGCGGAAACTGGAGACTGGACATCAGAAGCCACAGTGTTCCTCTTGGAAAGCTCATAATGAGGAGGGTGTTGAAGCCTCACATGTTGAACTGCAAGTGTCCCATCTGCACAGGAGAACCTCTGCATCTGCTGGATCAGAACAATGATGACATGTGCTTTATGTGCAACCGCGATGGAGATCTGGTGTGTTGTGACAAATGTCCACGTGCCTTCCATCATCACTGCCACAAACCAGCTTTAAGGGACGACACAATCGGtgatcACTGGACCTGTTCCTTCTGCAAGAAGTCTGTTCCAGGTGCAAGAAAGAAGAGCTCATGACCCGTCCTGAATGTTTAAACACGACTATCATAGTGACTGTTGGAGTGCGGAATGTTTTCCttttacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggctcaTTTCACTGactagaaaatatatatttttatcatattttttgcATGATACTTTTTGCTGGTGATGGTTGTGAATTATTTACAAATCAaaagtaataaacatattttttttacagta
>XM_034301487.1
CGCAGTCATAAGAGCTTGCAGAATATCTACTCTGATAATCATTTCTAACCACCAACATCCATCTGCGTGAGTGTGCCAGCTGGATTTTTTAGACATTATTTAGCATATTGGAGTCTGGCAGTGAGCAGCCATCACCCTGCAGCTGtgagacacacactaactACGGCTGATGAAGATTAGCAAGGAGTCTGGGAGTGATTCAGACTCGGACTCGGAGCCTTTGAAGCCCAGAACTCGAGGGAGGAAgagcatgatgatgatgagacagAGGTCTGGGAAGAGAAGCAGCAACCTGAACTCATTCTCTCCCCATGCCTCACGTCAGAAGAGATTCAGAAGCAgtCCCACGGTCCGTAAGCAACTGGGAGAGAGCCTCAAAAAGAAACCCAGGCTTGCTGTCACGTGTGGAAATAAAGAAGGCACGCTATACAAAGATAAGTTTAAGAAAAGTGAGCCGTGCATCTGGTCTAATCATAAGTGGTTCACCCCTACTGAATTTGAGAAGTTTGgaggaaaggagaaaaacaaaaagtggaAGATTAGTATCCTGCACAATCAGATTCCGCTGCAAACATTTATACAGGAGGGCTTTCTTCCCTGTCCATCGTTTAAAACGAAGCGCTCACGGGATAAAGAGCCAAAGTGCAGGAGGGAGCTGATTCGGACCAGAAGAAGTACCAGATATGGCAGAAACAGTCACACGTCCGAGTCTGACATCATCTCAGAATTGAGCTCATTGCCCAGCTGCAGCACTgacgatgatgaagatgatgttcAGGTCACTGAGAGAGAGTTCAGCGGCGACTCTTTTGACGTCACGTGTTCCAAAGGGAGAGAGGTTCTGTCCAAAGggacagACAGTCACACGTCCGAGTCTGACATCATCTCAGAATTGAGCTCATTGCCCAGCTGCAGCACTGACgacgatgatgaagatgatgttcAGGTCACTGAGGGAGAGTTCAGCGGCGACTCTTTTGACGTCACATGTTCCAAAGGGAGAGGGGTTCTGCATGTAACCCGCTTtgctacagAGACTTGTGGAAAATGCATCAGGACGCAGGACGCCTGGCTCACGCCCGAGGACTTCCTCAACAAGAACAAACCCGGCGGAAACTGGAGACTGGACATCAGAAGCCACAGTGTTCCTCTTGGAAAGCTCATAATGCTGGATCAGAACAATGATGACATGTGCTTTATGTGCAACCGCGATGGAGATCTGGTGTGTTGTGACAAATGTCCACGTGCCTTCCATCATCACTGCCACAAACCAGCTTTAAGGGACGACACAATCGGtgatcACTGGACCTGTTCCTTCTGCAAGAAGTCTGTTCCAGGTGCAAGAAAGAAGAGCTCATGACCCGTCCTGAATGTTTAAACACGACTATCATAGTGACTGTTGGAGTGCGGAATGTTTTCCttttacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggctcaTTTCACTGactagaaaatatatatttttatcatattttttgcATGATACTTTTTGCTGGTGATGGTTGTGAATTATTTACAAATCAaaagtaataaacatattttttttacagta
>XM_034301488.1
CGCAGTCATAAGAGCTTGCAGAATATCTACTCTGATAATCATTTCTAACCACCAACATCCATCTGCGTGAGTGTGCCAGCTGGATTTTTTAGACATTATTTAGCATATTGGAGTCTGGCAGTGAGCAGCCATCACCCTGCAGCTGtgagacacacactaactACGGCTGATGAAGATTAGCAAGGAGTCTGGGAGTGATTCAGACTCGGACTCGGAGCCTTTGAAGCCCAGAACTCGAGGGAGGAAgagcatgatgatgatgagacagAGGTCTGGGAAGAGAAGCAGCAACCTGAACTCATTCTCTCCCCATGCCTCACGTCAGAAGAGATTCAGAAGCAgtCCCACGGTCCGTAAGCAACTGGGAGAGAGCCTCAAAAAGAAACCCAGGCTTGCTGTCACGTGTGGAAATAAAGAAGGCACGCTATACAAAGATAAGTTTAAGAAAAGTGAGCCGTGCATCTGGTCTAATCATAAGTGGTTCACCCCTACTGAATTTGAGAAGTTTGgaggaaaggagaaaaacaaaaagtggaAGATTAGTATCCTGCACAATCAGATTCCGCTGCAAACATTTATACAGGAGGGCTTTCTTCCCTGTCCATCGTTTAAAACGAAGCGCTCACGGGATAAAGAGCCAAAGTGCAGGAGGGAGCTGATTCGGACCAGAAGAAGTACCAGATATGGCAGAAACAGTCACACGTCCGAGTCTGACATCATCTCAGAATTGAGCTCATTGCCCAGCTGCAGCACTgacgatgatgaagatgatgttcAGGTCACTGAGAGAGAGTTCAGCGGCGACTCTTTTGACGTCACGTGTTCCAAAGGGAGAGGGGTTCTGCATGTAACCCGCTTtgctacagAGACTTGTGGAAAATGCATCAGGACGCAGGACGCCTGGCTCACGCCCGAGGACTTCCTCAACAAGAACAAACCCGGCGGAAACTGGAGACTGGACATCAGAAGCCACAGTGTTCCTCTTGGAAAGCTCATAATGAGGAGGGTGTTGAAGCCTCACATGTTGAACTGCAAGTGTCCCATCTGCACAGGAGAACCTCTGCATCTGCTGGATCAGAACAATGATGACATGTGCTTTATGTGCAACCGCGATGGAGATCTGGTGTGTTGTGACAAATGTCCACGTGCCTTCCATCATCACTGCCACAAACCAGCTTTAAGGGACGACACAATCGGtgatcACTGGACCTGTTCCTTCTGCAAGAAGTCTGTTCCAGGTGCAAGAAAGAAGAGCTCATGACCCGTCCTGAATGTTTAAACACGACTATCATAGTGACTGTTGGAGTGCGGAATGTTTTCCttttacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggctcaTTTCACTGactagaaaatatatatttttatcatattttttgcATGATACTTTTTGCTGGTGATGGTTGTGAATTATTTACAAATCAaaagtaataaacatattttttttacagta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927374.2 True 1656 mRNA 0.47 12 4106876 4117915
XM_026927375.2 False 1531 mRNA 0.46 11 4106876 4114846
XM_026927377.2 False 1491 mRNA 0.47 11 4106876 4115067
XM_034301487.1 False 1588 mRNA 0.46 11 4106876 4117916
XM_034301488.1 False 1489 mRNA 0.46 12 4106876 4117916

Neighbor

gene id symbol gene type direction distance location
LOC113534503 pmm1,LOC107691086,LOC107672914 coding downstream 47385 4043045 ~ 4059491 (-)
LOC113534507 tob2,LOC107735623 coding downstream 107313 3993225 ~ 3999563 (-)
rangap1a rangap1,LOC107745514 coding downstream 169238 3927253 ~ 3937638 (-)
LOC113534792 LOC108272837 coding downstream 281372 3822746 ~ 3825504 (-)
si:ch211-106h11.3 LOC108272832,LOC108439110 coding downstream 297527 3794859 ~ 3809349 (-)
LOC113534634 LOC108272825 coding upstream 16422 4134338 ~ 4144544 (-)
LOC117596393 LOC108272830 coding upstream 48408 4166324 ~ 4168560 (-)
LOC117596407 NA coding upstream 52554 4170470 ~ 4175154 (-)
LOC113534587 NA coding upstream 61195 4179111 ~ 4187724 (-)
myl4 myl4,LOC107694961,LOC107754315,LOC107585102,LOC107740645,LOC107662407 coding upstream 221619 4339535 ~ 4345214 (-)
G399990 NA non-coding downstream 549 4100097 ~ 4106327 (-)
G399950 NA non-coding downstream 40596 4009067 ~ 4066280 (-)
G399945 NA non-coding downstream 68945 3924966 ~ 4037931 (-)
G399910 NA non-coding downstream 155479 3881393 ~ 3951397 (-)
G400085 NA non-coding upstream 72825 4190741 ~ 4276482 (-)
G400112 LOC108272813 non-coding upstream 116487 4234403 ~ 4293157 (-)
G400131 NA non-coding upstream 162861 4280777 ~ 4281433 (-)
G400133 NA non-coding upstream 166133 4284049 ~ 4284393 (-)
G400428 NA non-coding upstream 415925 4533841 ~ 4534131 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 811603 3017290 ~ 3295273 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 872552 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 910313 3147299 ~ 3196563 (-)
G399490 nup85,LOC106601803 other downstream 1142719 2961713 ~ 2964157 (-)
G399028 NA other downstream 1680270 2372296 ~ 2426606 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 2481 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 32983 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 177300 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 479884 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 843186 4961102 ~ 5008464 (-)

Expression


Co-expression Network