LOC113534607 (LOC108272840)


Basic Information

Item Value
gene id LOC113534607
gene name LOC108272840
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3747482 ~ 3754120 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927512.2
GTGATGACTGTACAAaagcagagaacacacacacatacaaccatacacaccaccaccaccacacactcacacactcacactcgctTACCAGGCTTCAGGTCCTGCTGATGACTTGAGAGACATCTGTTAGGTCTTTCCTCCTCGTGTCTCTTTAAGAAAAATGCCTCGCTCTTTTCTGGTCAAGAGCAAGAGGGCGGGGTCTCATTCGTCACGCTCCGCCCACTCCCACACCTACCACTCTGATGGACAGCTCGGAGCCTTGCACGGGTCCACCGGGAGCAGCTCACCTGTAGCACTAGAACTCAGCCCAAAAATGGCGTCAGCTCCCAGTTACCCCGCCTCTCACTGGGTTTCCATGGAAACCAGCCTGAACTCCGCCTCCCAGGCTGAGAACTGGGGCCTCTGGACAACAGGTGAGCAGGCAGGTGAGAGTGAGCGCCCCCCGGTGTCCACCGCAGTGTGGTCTCCTTCCCTGAGCCACACGCTCAGCTCTCACAGGGAGCAGGAACTGGAGCGACTGGTGCAGGTGCTGCTGAGCCACAGACTGCAGGACAACTCCAACCCTCCGCTGTGCGAATGTCCACTCTGTGAGAAGGTGCTGTCGTCAGCTGTTGGTTTAGTGACTCACCTGCGCAGGTCTCACATAAACAGAGTCGCTGTTCCACTGACTGGGTCAtggaacatgcacacacacgggCTCCGACCCCCAGCTGGCTGCTACGGCAGGGCGAAAgagcGCAGTTTTGTCTGTAAGGTGTGTGGGAAGGTGTTTAAACGCTCGTCGACTCTCTCCACTCACCTGCTGATCCACTCAGACACTCGGCCTTACCCCTGTCAATACTGCGGCAAGAGATTCCACCAGAAATCTGACATGAAGAAACACACCTTCATACACactgGTGAGAAGCCCcacgtgtgtgtggtgtgtgggaaGGCGTTCAGTCAGAGCTCCAACCTGATCACTCACAGCCGGAAGCACAGCAGCTACAGACCTTTCCGCTGTCCGCACTGCCCGCTCGGCTTCCAGAGGAAACTGGACCTGCAGCGCCACCTCGAGACGCACTGCAGCAATAACAGCAGCACGGCCTACCAGAGCAGCCTGAGTTAGCGCTCACTGCTAAATACCCAAAACCGCAGTGTACAGAAAATGTATATTCGCCTAAAAATTATTGTCTTGAAATGcccttttttaaaacagatgtgctcttaatgaatatgcaaataaaaacaaaatggtgaaaGTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927512.2 True 1246 mRNA 0.54 6 3747482 3754120

Neighbor

gene id symbol gene type direction distance location
ubn2b LOC108272810 coding downstream 146992 3585274 ~ 3600490 (-)
junbb LOC108272820 coding downstream 257315 3488273 ~ 3490167 (-)
mast1b mast1,LOC107567212 coding downstream 282681 3433728 ~ 3464801 (-)
atg4db LOC108272831 coding downstream 319955 3419380 ~ 3427527 (-)
evplb LOC108272806 coding downstream 343952 3382114 ~ 3403530 (-)
si:ch211-106h11.3 LOC108272832,LOC108439110 coding upstream 40739 3794859 ~ 3809349 (-)
LOC113534792 LOC108272837 coding upstream 68626 3822746 ~ 3825504 (-)
rangap1a rangap1,LOC107745514 coding upstream 173133 3927253 ~ 3937638 (-)
LOC113534507 tob2,LOC107735623 coding upstream 239105 3993225 ~ 3999563 (-)
LOC113534503 pmm1,LOC107691086,LOC107672914 coding upstream 288925 4043045 ~ 4059491 (-)
G399783 NA non-coding downstream 18097 3728939 ~ 3729385 (-)
G399742 NA non-coding downstream 111922 3601046 ~ 3635560 (-)
G399738 NA non-coding downstream 162268 3584901 ~ 3585214 (-)
G399727 NA non-coding downstream 185121 3561148 ~ 3562361 (-)
LOC117596450 NA non-coding downstream 231249 3514812 ~ 3516233 (-)
G399804 LOC108272816 non-coding upstream 19213 3773333 ~ 3773628 (-)
G399806 LOC108272816,LOC108439142,LOC107563749,LOC107672936,LOC107755611 non-coding upstream 21185 3775305 ~ 3775700 (-)
G399811 NA non-coding upstream 28037 3782157 ~ 3782431 (-)
G399900 NA non-coding upstream 61492 3815612 ~ 3855630 (-)
G399909 NA non-coding upstream 86483 3840603 ~ 3840914 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 452209 3017290 ~ 3295273 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 513158 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 550919 3147299 ~ 3196563 (-)
G399490 nup85,LOC106601803 other downstream 783325 2961713 ~ 2964157 (-)
G399028 NA other downstream 1320876 2372296 ~ 2426606 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 366277 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 396779 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 541096 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 843680 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 1206982 4961102 ~ 5008464 (-)

Expression


Co-expression Network