ccdc106b (cc106,LOC108273335)


Basic Information

Item Value
gene id ccdc106b
gene name cc106,LOC108273335
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12420503 ~ 12427389 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927850.2
tctctttgattgTTGACTTGTGAGAGAAGTTAAATATTGCACTAATTCacgaaaaaaaaaccacccaaagatgaaaacagaataaatatcTCAGACTGTTTGTAAgccacacaaaaacaacaacaacaacaacaacatcccGGATTTGTGCACCGCCGCTAGCGTTTATACCTGCAAACAATTCGAAGAGTTAATATCttgTTTGTGAGCTTGGATCAGAATTGTAAGAGGATCCATGTCGGACTGCAATAATGACTGAACCACAGAGAAGTACAAGGAACTCAACAGATTTGAAAAATGAGGATGGCTATGAAATCTCTATTCCCTTTGAAGACAGTAGTGCAGACCAGTCTGGTTTCTACAACCAGAATGACCACATGTTTGATGAAAGTGCATCAGGACAGACTCCTCCCTGCAACCCATACCTGCTGATTTCCAACCTTCGTGCCCAGCTGCAGATCTCCTTGGAAAAGAACTCCTGGCTACAGAAACGCATAGAGGACCTGGAAGAGGAAAGAGACTTCCTGCGCTGCCAGCTCGACCGGTTCATCTTCACCACCAAGAGTCAGGAGAGGAATGAGCTTCAGCCTGAAGTTCCCCAACAACCCACATCCCAGAAGACCGTCCTTCGCAGGGCTTCGACCCCGTCTCCACTGCCCATGATGACTCGTTCTGGACAAGCGCGCAGCCAGACCCTAAagcgaaaaaagaaaaagaacagcgTCCAAGatgaggaagatgaggaagTGATAGAGGAAGAAGAGTTTATAGAGGAGGATGGCTACCTTGAAGAGGAGGAGATTGTGTCAAATGATGACGACTCTGACACCAAAAGCTGCAGAAGAAGCAGGGCTAAAAGCAGGTCCAACGGTGGACCGACGAGAGTGAAAAGAACTCGGGTATTCCGCATAGCACGAATGGAGAGACAAAGAGTGAAAGACCCTGCTGGAGTGCTTTTTCGCTACAAGAAGATTCTGGTGACATACCAGAAGCTGAAGAGCATGTCCAGAGCCTTCCAGGTTCATGGGGTCGACCGTAACACTGTAGCCTCCACCACTCCCATTGCGGAGTTGCTCCTGGTTGCTccagagaaagtggaagaagtCGGTGAGTTTGATTCCTCCAAGGAGAAGCTTCTAGACTATGCACGGCGCTGCTACAAGGCCCTCGATGAGACCGCTCATGCCAAGGTGCAGGCCTTGAAGAAAAACAACCTCCTGCTGCCCATCTCCTACAGATTCAGGAACTGATGCaccaaaaaaaactgtttccttGAAACCTGCTGCAATGATAAATGGAAGGAGGATTCAAGGTTGCTGACTGGATGTTGCGGCATCTAAACAAAGAACTGTGCTGGGTTTGTTTTTTCTACCTCAGCTGTTGGTTATTATTtggacaaaaacacatttaaaaaatccagtAGCATTGCTGGTATTGGTAATCCTGGTTAAGGTTGATGGGAAGGTCACTcctttgttggtttgtttttagtCTGAGTTCGAATGCGTCGGTCAGACAGGATGCGCTCGAGGGATCTGAAGCGTTAGATGAGGCATTGACAGAGATTTGAGTAATGATGATGGAAAGAGTAAGTGagaagcaaaaaagaaacaaagggAAGGAATGGCTAAGCTATACATTTCATCCATTACCTTTTGGAGAAAATCACTGTATTTAAagactgtatatgtatatttttgtacttgttcattattatttgggaaaaaaaaaataactgctaaCTTCCTCACTCCTCAGACGAATGTAACACTTATTCCCCTGTTCATTAACACCTTTAATGTAGCTTTCTAAATTATGTGAACTCTTCTGATTTACGATTATGAAAAAGAGATTAAACTGTGTTCTTGGCCTAAGTTTGAagacatgggaaaaaaaaaaaaaaaaaaagatttacagatttacCAGCGTTCATTaccatgatatttattttaagaaatggcAGTTTAGTCATCTGTAGTTCATATGAATGAGTTCAATGGAGCCTGTAAGGACGGTCTGCTCTTTTCAGTTTGGTTGTAGATGTTTAGCCTTCAGATGGTGAGAAGTATTTTtgataaaccttttttttttttttttttttttttttttttttttttttaaatactgtatcaTTCCTTCAGTAGTTGTGTTCAATCATATACCTATACACATTCCTGTAAACACCTGACTACACTTATCTAGAGCTAAGACCAAAGATACAGTGTGTAGTTATGTCATTATCCTCAGGGATGTAGCCTGCTAACTCAGTCTGATCACTAAAATTGTAAAGCTTCACTTGTCTGCCTTATTATATTACTGAGGTCTTAATACACTGTGGAATCGTAGATCAGTGATGTCGTTAATGCCTGTCTTTAAGTCCAGGTAAAGGACGATTGCTTGGTTCTGTCTTGCTTTTCGGTTGAGTACCTTTTTGTGAGTCAGAGAATTTTCTTTTTGACCATCTGTTATTTCTCTAGAGGGGAATAAACCGTATGTTCATTTAA

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 106-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927850.2 True 2504 mRNA 0.41 8 12420503 12427389

Neighbor

gene id symbol gene type direction distance location
u2af2b u2af2,u2af2b,LOC103026862,LOC107656609,LOC108439900 coding downstream 5711 12399540 ~ 12414792 (-)
cnot3b LOC108272956,LOC108439899,LOC107656608,LOC107739521,LOC107599539,LOC102215018 coding downstream 29141 12355242 ~ 12391362 (-)
shisa7b LOC108272955,LOC108439898 coding downstream 71931 12329158 ~ 12348572 (-)
znf865 znf865,LOC108272906,LOC108439897,LOC107724093,LOC107589382,LOC107599536,LOC107656606,LOC105902018 coding downstream 102612 12308795 ~ 12317891 (-)
dbpa LOC108272905,LOC101068247 coding downstream 113446 12291742 ~ 12307057 (-)
si:ch211-232m10.6 LOC108272566,LOC108439912,LOC101076817 coding upstream 7583 12434972 ~ 12440347 (-)
zgc:194578 LOC108273361 coding upstream 20349 12447738 ~ 12462356 (-)
styk1a LOC108273367 coding upstream 38348 12465737 ~ 12482142 (-)
si:ch211-288g17.3 LOC108273223 coding upstream 209461 12636850 ~ 12649319 (-)
kmt2ba LOC108272954,LOC107701550 coding upstream 260373 12687762 ~ 12724515 (-)
G404421 NA non-coding downstream 145001 12275268 ~ 12275502 (-)
G404282 NA non-coding downstream 294663 12125457 ~ 12125840 (-)
G404243 NA non-coding downstream 419993 12000266 ~ 12000510 (-)
G404241 NA non-coding downstream 423033 11997070 ~ 11997470 (-)
G404235 NA non-coding downstream 449539 11970742 ~ 11970964 (-)
G404667 NA non-coding upstream 87082 12514471 ~ 12515210 (-)
G404681 NA non-coding upstream 147691 12575080 ~ 12577284 (-)
G404682 NA non-coding upstream 149143 12576532 ~ 12578806 (-)
G404687 NA non-coding upstream 161883 12589272 ~ 12591533 (-)
G404692 NA non-coding upstream 174243 12601632 ~ 12635213 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other downstream 164131 12145598 ~ 12256372 (-)
si:ch73-347e22.4 NA other downstream 630324 11777369 ~ 11790179 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 3004250 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 3136010 9227395 ~ 9284493 (-)
G402673 NA other downstream 3259033 9143870 ~ 9161470 (-)
G404644 NA other upstream 3606 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 87927 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 143075 12570464 ~ 12570536 (-)
trnav-cac_23 NA other upstream 144204 12571593 ~ 12571666 (-)
trnav-cac_24 NA other upstream 146210 12573599 ~ 12573671 (-)

Expression


Co-expression Network