zgc:194578 (LOC108273361)


Basic Information

Item Value
gene id zgc:194578
gene name LOC108273361
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12447738 ~ 12462356 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927862.2
cttcctgtgtctgtgtcgAGGGGAGGCAGAGTCTCTGGCGCTGTTTGTTGGCTTTTCTCAGGTAGCAGCAACCGGAAGCGGAAATTACCCCTGGGTTCGGGGAGTCTCAGCTTCCAGTCGTCCctgtcatccatccatccatccatccgatccgtccatctatccatccagtTTCTCAAAGCATTGTAGGTAACACACCAGGTACCATGACCCAGTCAATGATACGTAGAACCCTCAAAAATCTCGTTCAGAATTTCTCTGAGGCTGAGGTGAAGGTGAGAGAGGCGACCTCTAATGACCCCTGGGGGCCGTCCAGCTCACAGATGGCGGACATCTCGGACCTGACCTACAACGTGGTGGCATGCAACGAAATTATGGGAATGTTGTGGAAGCGCCTGAACGATGACAAAAACTGGCGGCATGTATACAAGTCTTTAACACTACTAGAGTGTCTCCTGAAAACCGGTTCTGACCGCATTCCGAAGCAAAGTCAGGAGaacattcatattattaaacCGCTGATAGAGTATCGTTTCACAGACAAGGACGGGAAAGACCAGGGTGTGAATGTCAGGGAGAAAGCCAAGATAGTGTTGTTACTTATACAAGATGAGGAGAAACgtaaagaagagagagagtttgCCATGAAGACTAAGGACAAACTGGCAACTgCCTCTTCAGAGGCCAGTGACAAAGTAAAGACCGAGATTCCTTCATATACGGGGCTGCCATCCCTGGACAACATCCCCTCAGTGGCAGATCTGACAGCCAGCATGgcaaagaaaaaggaagagaggaggatactagaggaaaagaagaaagaagaagagagacgTGCAAAGGAAGGCGACACAGAGCCTGACCTGTGGGAACAAGCAGCAACTGCAGCACCTCCTTCCAGCTCGGATCCCTGGGGAGCTCCAGCTGATGCTCCAAAAGCCGTGGGTCCTGCTACGAACGACCCGTGGGGCACACCAACAAATGACTCCCAAGATTCAAATATGGGTTCCAGTGATCCTTGGGGTGAGTCGGCGGATAAAGTGAAAGACAATGCCAATCCTTCTAACGATCCATGGGCTGGTTTACCAGATGAGAAGATTTCACCTCCTGCCAGAAACTGTCCATGGGGTGATTCAGCAGACCCTACAGAAGACAAAGGTGTAGCTACTAATGACCCCTGGGGCACGTCAAATGACTTGGTAGCAAATTCACAACCAGCGAAGACAGATCCTTGGGGTGCACCAGTAGATTCTGCAGAAAAGTCTGCTCCTGCAGCATCAGACCCCTGGGAGACACCGTCGGCGCCACCTCTGGCTAAGTCGGATCCATGGGGTGGGGATAATGGAACTTCAGCAGTGTCACCCACTGATCCCTTTAGTGAAGGGCCCAAAGCTGATCCATGGGGCACATTAGCCTCTTCGCCACTTTCAACTAATGATCCCTGGGGTGCTCCGGCAGCTCCCACTGATGCCTCAGCAAAAGCTGACCCCTTTGGTGATGGAGGAAACTCGGCTGCTTGGGGGGTTCCTGCAGAGGCTGACGTATCCTCATCCGTGCCCACTGAAGACTCCAAAAAGCCATCCAGTTTCTTGGGGGAAGGAGCCTCATTGGTGGATCTCGACTGTCTCATGTCAACAGGGAATTAAATTACCCAAGCCTCTACTTCGGACCATTCAGATTAGATAATGTTTTGTGGATAGATGTTATCATTGTAGGTGTAACTGTCCTCCTTTCCCCTCTGTTTTCAGCACTCTGTTCATTTCTTCCATCTCTCTGCTTTCTGATTTGGTTTGTTTCGCGTGTGCTGCTTACTGCTTGCTCTTTTTGCTTTGTACTAAACTAAAGTTCCATGGTTGCATCATTTTTGCAGTTTCCATccaacacgtttttttttttttaaatttacccCATGATGGTTTGATCATCTCTTGCGTTCTTAAACCCACCTGTGGCACCTCCAACCCATCAGACCACCTTCTTTCATTTGGTCCTGCCTAAAACGGATATACAGAATGGTACAACCCAGCAGTCTGGGACGTCTTAATGgggaaatgaaaatgttatcATTTGGAGAGTTCTTTAGGAGTGGAACAGTGAAATCTGTGGGtggtatttaattattttttatttatttattttttatttattcagtttttcaaTCACCCATAGACATCTACCTTTCATACATTCCCTTACTAAATGCCAGCTTAGAGCCTACTgggcgtgtgtatatgtgacaatatttaaaatcaataaGCAGCAATATGCTTTATGTGTAGccttttttttcacagtggTAGTCCGGAAATTACGAAACTTGGTTTATTGTTGTTGGTCTTTCTCATCTACTATTCTTCTAAGACATTAATGACATATCTGATGAGTACAGGAGCAAgttataattttctttttatttatatggatAAAGTTGTATAATTTAATCTGGTGAATACATTGTGCTTTTGGGATCATTGGGTTCAAAGCCAAAACATTTAAAGCCATGAAGCCGTTCCCTGATTAATGTTACTTTACTCCCTACTCTAAAGCCACAGATTAAAGCTCTCTGTCACTACAATGGATTTCTGTCATAGCGACCTAGTGGAGGTCTTTGTGATCGATGTGATCGATGTGATCGATGTGATCAGTGCAGTATATACGAGGGTATGCACAGAGAATGCTATCACGTAATTAGTGGAAAATTCATTGCTATGTTTTCATACAAGTTATCTTCGCTCCCCTGCATGGCCCCGATGCTCCTCAACAAGTGCAGCGTGAAATTGGGAGgttgttgtaaatgtttttcGACATCTGTGTGACATTCTATGTCCAAAATTTGAGCAGAACAACAGTACGCATGAcgcaacacaaaaaaacaccatgaaGAAACTATCAAAGTTTTAGCAATGCTTCTACATGGCTTAAAAGCACAGAAAGTAACAGTAGTTCCTTACCTGCGTATATatagtttcttttttaataactcCCCTTTCACAATATACCAAaatacctgcattttttttctcactttaatCCTTGCTAGAGCCGTCCAAATACGTTGTCATCACATTACAGTCATCTGTAAGTTGTAAGCCACACAGATTTGGCAACACGTTCATACTGTCGaactggcattaaaaaaaaagttgcgaTTCTCAAAATGTGAAGCAAGATTCTCGCAGTGTCAACTTTTCATATGTAAAACTCTCAATGCTGACAGCTGATTCTAAAGCCGTTTCCTTTCCACACTATACCCAGGGTGGTAGCCTCACTACTTTTTATATCAAGtactttataattaattaaacttgTCTTGTCGATAGAGCTGTATGGTAAAACTGATaaacactatttttttcttagtCTGCCCAATATGCATTTTAATCCAAGAGGTTATTCATCTGTCTGTTCTTATCTATTAGGAAGAAACAAGACAAATGGCTCAGGCTGCTTAATGAAACCAAATTGTTTGAGAACAAATTTGTCAGGtagtttactgtttttttcagttAGCTATTAGTTGTCAATTGAAGGAGAGGTGACTTCAGTGATGGATTTAGCTTAATTTTCCATTAATTCATCAACATTTTGGCTATTTTTGTTACACAGGGTGCCTTGTATCCCGTGTAGGTTATGTCAACCAAAATACAACTTACAGTTGACTGTATGGCAGTGTATTTGGTACAGCTATAGAGAAAATAGACCTAGTAAAGTAGTCGAGCTTTAAACCTGCACAATCTGTGTTGTGATGTTGGTCGTCTGAATGAGCaactcaaattcaaatttcaaataaGTATTGAATATTGTAgtcaaatgtaaaaagaaaaaaaaacaatccgtATTTTGTCATTGAGACAAGACTATCTATCCATTTATCTATGtatccttatttatttatttatttatttattgattgattgattgattgattgattgtgatTTTGTAACCTTCTATATTGACCTTAACATCTTACCATTAATGCTGGACATACACTATAATTTCACTTCACTACTATGAAAGGAAATTCGAATGAGTGCTGTGCTGTACATATAAGTTGTATTTTGGATGGTAAAGGAATATATTTATTCTATTATGAGTGTTGTTTCTTGTGAATGTGTACACTggaagaataaaataaacaaaggtaTGAATTCAGGTCTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927862.2 True 4161 mRNA 0.42 9 12447738 12462356

Neighbor

gene id symbol gene type direction distance location
si:ch211-232m10.6 LOC108272566,LOC108439912,LOC101076817 coding downstream 7391 12434972 ~ 12440347 (-)
ccdc106b cc106,LOC108273335 coding downstream 20349 12420503 ~ 12427389 (-)
u2af2b u2af2,u2af2b,LOC103026862,LOC107656609,LOC108439900 coding downstream 32946 12399540 ~ 12414792 (-)
cnot3b LOC108272956,LOC108439899,LOC107656608,LOC107739521,LOC107599539,LOC102215018 coding downstream 56376 12355242 ~ 12391362 (-)
shisa7b LOC108272955,LOC108439898 coding downstream 99166 12329158 ~ 12348572 (-)
styk1a LOC108273367 coding upstream 3381 12465737 ~ 12482142 (-)
si:ch211-288g17.3 LOC108273223 coding upstream 174494 12636850 ~ 12649319 (-)
kmt2ba LOC108272954,LOC107701550 coding upstream 225406 12687762 ~ 12724515 (-)
ndufv1 ndufv1,LOC108437925,LOC103023083,LOC107693353,LOC107589403,LOC107101109 coding upstream 299356 12761712 ~ 12770681 (-)
hcn3 hcn3,LOC108437924,LOC107739502,LOC102783101,LOC103358769,LOC102202422 coding upstream 309565 12771921 ~ 12783866 (-)
G404421 NA non-coding downstream 172236 12275268 ~ 12275502 (-)
G404282 NA non-coding downstream 321898 12125457 ~ 12125840 (-)
G404243 NA non-coding downstream 447228 12000266 ~ 12000510 (-)
G404241 NA non-coding downstream 450268 11997070 ~ 11997470 (-)
G404235 NA non-coding downstream 476774 11970742 ~ 11970964 (-)
G404667 NA non-coding upstream 52115 12514471 ~ 12515210 (-)
G404681 NA non-coding upstream 112724 12575080 ~ 12577284 (-)
G404682 NA non-coding upstream 114176 12576532 ~ 12578806 (-)
G404687 NA non-coding upstream 126916 12589272 ~ 12591533 (-)
G404692 NA non-coding upstream 139276 12601632 ~ 12635213 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other downstream 191366 12145598 ~ 12256372 (-)
si:ch73-347e22.4 NA other downstream 657559 11777369 ~ 11790179 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 3031485 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 3163245 9227395 ~ 9284493 (-)
G402673 NA other downstream 3286268 9143870 ~ 9161470 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 52960 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 108108 12570464 ~ 12570536 (-)
trnav-cac_23 NA other upstream 109237 12571593 ~ 12571666 (-)
trnav-cac_24 NA other upstream 111243 12573599 ~ 12573671 (-)
trnav-aac_24 NA other upstream 112384 12574740 ~ 12574815 (-)

Expression


Co-expression Network