atp1a3a (LOC108433742,LOC108272709,LOC102313318,LOC102779181,LOC103362864,LOC100707930)


Basic Information

Item Value
gene id atp1a3a
gene name LOC108433742,LOC108272709,LOC102313318,LOC102779181,LOC103362864,LOC100707930
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 15165188 ~ 15206951 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927874.2
GCTTCGGCTCTTCATTCTCAGCAGCAGGGCTCGCGCGCGGTTCAGCGCTCTTCCTCAGCGCGCTCTGTTTCCTGCGCCGCGTCCTGCGTCCTCTCACCTTCCATCCATATAACAAACAACCCGATGTGCTGTCCTCTAACCGCACTCTCTTCATGACCTTGGCTGTTTCTGTTATTATTCACCATATAAGGAATGGGTTATCCATTTAACTGATCTATTTTCGAGCATCCGCTTGTGTCTGAAGGGTGTTTCTCCTGCAGGACGCGACCTCCTCGTTTTCTGCATCTTTATTTCTGATCGACTGAAAACAAGCGCCGCTTGATCACCGCCTGAAATGGGGTACGGACGGTCAGACAGCTACCGCGTGGCAACCACGCAGGACAACGATGAGAAGGAGTCTCCCAAGAAGAAGGGAGGGAAAGATCTTGATGACCTGAAGAAGGAGGTGCCACTGACAGAGCATAAGATGTCCATTGAGGAAGTATGCCGAAAGTTCAACACTGACATTGTGCAGgGTCTAACTAATGCTAAAGCAGCTGAGTTTCTGGCCCGGGATGGTCCAAACGCACTCACTCCTCCACCCACTACCCCAGAGTGGGTTAAGTTTTGCCGCCAGCTCTTTGGGGGCTTCTCCATCCTACTATGGATTGGAGCCATCCTCTGCTTCCTGGCCTATGCCATCCAGGCAGTCACAGAAGACGAACCAGCTGGAGACAACTTGTACCTGGGCATCGTCCTATCTGCTGTGGTTATCATTACTGGCTGCTTCTCCTACTTCCAGGAGGCTAAGAGCTCAAAGATCATGGAGTCCTTCAAAAACATGGTGCCCCAGCAAGCGTTAGTGATCCGTGAGGGGGAGAAGCTGCAGATTAATGCTGAGGAGGTGGTAGCTGGAGATTTGGTGGAGGTGAAAGGAGGAGACAGGATCCCTGCTGATCTAAGAATCATCTCTGCTCATGGTTgcaagGTTGACAACTCCTCACTGACAGGTGAATCTGAGCCTCAGACCAGGTCACCTGACTGCACCCATGACAACCCCCTGGAGACCCGCAACATTGCCTTTTTCTCAACCAACTGTGTTGAAGGTACGGCGCGCGGCATTGTGGTGTGCACTGGTGATCGAACTGTCATGGGTCGCATTGCCACTCTGACCTCCGGCCTTGAGACGGGCAAGACCCCCATCGCCAAAGAGATTGAGCACTTCATCCACATCATCACAGGCGTGGCTGTTTTCCTGGGAGTCACCTTTTTCATCCTGTCCATCATCTTAGGCTACTCCTGGTTGGAGGCCGTTATCTTCCTCATTGGCATCATTGTGGCAAATGTGCCTGAAGGACTCCTAGCCACTGTCACTgTATGTCTGACCCTTACAGCTAAACGCATGGCTCGTAAGAACTGCCTGGTGAAGAACCTTGAAGCTGTTGAGACTTTGGGTTCCACTTCCACCATCTGCTCAGATAAGACTGGCACCCTGACACAGAACCGCATGACTGTGGCCCATATGTGGTTCGATAATCAGATCCATGAGGCCGACACTACTGAGGACCAGTCTGGGACATCCTTCGATAAAACATCTGTGACGTGGGTGTCACTGGCCCGTGTGGCGGCACTCTGTAATAGGGCAGTGTTTAAGGCAGGGCAGGAGTCTCTGCCAATTCTCAAGCGGGATGTGGCTGGTGATGCCTCTGAATCAGCTCTGCTGAAGTGTATCGAGCTCTCCTGTGGCTCGGTCAAAGCCATGAGGGACAAGAACAAGAAGGTGGCTGAGATTCCCTTTAACTCGACCAACAAGTACCAGCTTTCAGTGCATGAGACCGAGGACACAAATGATAACCGCTACATGCTGGTGATGAAGGGCGCCCCAGAGCGTATTCTGGAACGTTGTTCCACCATCATGATGCAGGGTAAAGAGCAGCCCATGGATGAGGAGATGAAGGAGGCCTTCCAGAACGCCTATCTGGAGTTGGGAGGACTGGGAGAGAGAGTCCTGGGTTTCTGCCATTTGTTTTTGCCCGAGGACCAGTACCCTAAAGGGTTTGCTTTTGATACAGATGATGTGAACTTCCAGACAGATAATCTTTGCTTTGTGGGTCTGATGTCTATGATCGACCCCCCGCGTGCTGCGGTGCCTGATGCTGTGGGCAAATGCAGATCAGCTGGCATAAAGGTCATCATGGTGACAGGCGACCACCCAATCACAGCCAAGGCCATCGCCAAGGGAGTAGGTATCATCTCTGAAGGCAACGAGACAGTGGAGGACATCGCTGCTCGTCTTAATATCCCTGTTAGCCAGGTCAACCCCAGGGATGCAAAAGCATGTGTGATCCATGGCTCGGATCTGAAAGATCTGACCCAGGAGCAGATGGATGAAGTTCTGAAGAACCATACCGAGATTGTCTTTGCCAGGACCTCCCCACAGCAGAAGCTTATCATTGTAGAGGGCTGCCAgagacagGGTGCCATTGTGGCTGTGACTGGTGATGGCGTAAATGACTCCCCGGCTTTGAAGAAAGCAGACATCGGCGTGGCCATGGGAATCTCAGGCTCAGATGTTTCGAAGCAGGCAGCTGACATGATCCTGCTAGATGACAACTTTGCCTCCATTGTCACAGGCGTGgaagaggGGCGTCTGATCTTTGATAACCTAAAGAAATCAATCGCTTACACCTTGACAAGCAACATTCCTGAAATCACTCCCTTTCTGTTCTTCATCCTGGTTAACATTCCTCTTCCTCTTGGGACCATCACCATTCTGTGCATCGACCTGGGTACTGACATgGTGCCTGCCATCTCCTTGGCCTATGAAGCAGCAGAGAGCGACATCATGAAGCGCCAGCCCCGTAATCCTCTGAGAGACAAGCTGGTTAATGAGCGTCTCATCAGCATTGCCTATGGACAGATTGGGATGATTCAGGCTCTAGGAGGTTTCTTTGCCTACTTTGTGATCATGGCTGAGAATGGTTTCTTGCCCTCCCTGCTGGTGGGCATTCGGCTTAACTGGGATGATCGGTCCAACAATGACCTGGAGGACAGCTACGGCCAGCAATGGacctATGAGCAGAGGAAAATCGTGGAGTTCACCTGTCATACAGCTTTCTTCGTGAGCATCgtggtggtgcagtgggccGATGTCATAATCTGCAAGACCCGTCGCAACTCTGTGTTCCAGCAGGGCATGAAGAATAAGATTCTGATCTTCGGACTTTTTGAGGAGACAGCTTTGGCTGCCTTCCTTTCTTATTGCCCAGGCATGGACGTGGCCCTTAGAATGTACCCACTGAAgCCCAGTTGGTGGTTCTGTGCATTTCCGTACAGCTTCCTCATCTTTGTTTATGATGAAATTCGAAAACTCATCTTGCGCAGAAACCCGGGAGGTTGGGTTGAAAAGGAGACCTACTATTAAATCATCactttttcctttacttttcaTTCTGTCCCTATTTGCCTGCAcagcttctttctctctctctctccccccttctctctctctctctaaataacAACCTAAAATAGAATAAGCAAAACCAGACCATAATAACACCCTGTCCTATTACCTTctttcaagaaataaaaaaaaataaaatacagatgcTAATAAGATATGCGAACCAACAGTGATAGAGAGAACGAGGTTGGACTCCTTTCTCTTCGTTCACATTTTTTGGTTTTCTACTGTGACCAAAACACTACAGCTGATTTTTTGCCAATCTCTTCTCCATGCTGTTTATTGATATCTTTCAACACTGTCAATGTTGTACTGAATACTAGTGACACTGCTGATTCTTGTCGTAATATAAGTCGTGACCAACTGAGGACGCGAATGTCCTTTGCACACACTGCCACTTATTTTTCCTCCTCAGACCCCCTGTTTGTCCcccttcactctctcttttaACCACTCTTCTCCCTCCCTGCATCCTTCTTGTTACCCCCTGCTGAAACATAAGTGTAATGAAACAACAGCTACTGCCTTTCAGTCATCTAAGAAATTAACAGTACCTTCATCTCTggtctgtttctcttctctgaTACTCTTCCCACCctgctgtctctcactctctgccttttctctctgccactgtgttttcttttgtcacttttttgttCAGGCTCTGAGTGCTATCTGTTTTTCCCTCCTAAATGACAAGCAACATTCTCTCGATACCATCCAAATGACTACCCACCGTCCTGCCCTGACCTAAcgtccctccctctctgtctgtatgtctgtctgtgaaTAAAAATCCCTGCACCTCTCCTGCTCTCCTTTCAAGAAACGACGAAAATACAgtctttgtgtgttttaggaatCCAGTTTCATTCTTTAAATAAGTGAGgaaaatagatgaaaaaaaagttaaataaggCTATGTATCTTACCTGGAAAACAGGagcaagaaaattaaataaaaaagaagaacctctctttttttcagtttggtgtcagtttgtttttgtgtgtgaccTTAATGAATTGCTAAGTTATAGATATAAGCATTCAGTGGTCTGTGTAATTCATACAGTGCGTTAATCTTTTTATTGTTGACACGTGTAAATTAGGACTGGAacaacatgatgatgatgataattatgGTCTGATAATTGTAGAATTCAGTATCATGGTGTTCTTTGTCAAGGTGTGTGCTTTCTGCTGCAGATAATGTTTTCCTTTACAACTGAAAAGAGCAACAGCAAAACATGAAATTACCGCAGAAAGTTGGGAAATTTGCTAGAacatttacttaaaataaaaaatgtttaaaaacaa

Function

NR:

description
sodium/potassium-transporting ATPase subunit alpha-3

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927874.2 True 4768 mRNA 0.48 21 15165188 15206951

Neighbor

gene id symbol gene type direction distance location
LOC113534955 LOC108272455,LOC108433744,LOC107753802 coding downstream 28398 15073669 ~ 15136790 (-)
cica LOC108272903,LOC108433746 coding downstream 200377 14931143 ~ 14964811 (-)
si:ch211-264f5.6 NA coding downstream 247271 14897610 ~ 14917917 (-)
gnb3b gnb3b,LOC108433753,LOC107666347,LOC107665150,LOC107753988,LOC107727720,LOC107563025 coding downstream 297590 14860254 ~ 14867598 (-)
daxx daxx coding downstream 495148 14652344 ~ 14670040 (-)
G405983 NA non-coding downstream 112344 15052587 ~ 15052844 (-)
G405982 NA non-coding downstream 113000 15051955 ~ 15052188 (-)
G405981 NA non-coding downstream 113291 15051689 ~ 15051897 (-)
G405976 NA non-coding downstream 116010 15048721 ~ 15049178 (-)
G405967 NA non-coding downstream 145948 15018686 ~ 15019240 (-)
G406054 NA non-coding upstream 250 15207201 ~ 15207531 (-)
G406078 NA non-coding upstream 49851 15256802 ~ 15257054 (-)
G406079 NA non-coding upstream 50774 15257725 ~ 15257945 (-)
G406083 NA non-coding upstream 64722 15271673 ~ 15272249 (-)
G406086 NA non-coding upstream 66057 15273008 ~ 15273429 (-)
G405961 NA other downstream 151200 14967476 ~ 15013988 (-)
tpbga LOC108272337 other downstream 686111 14475476 ~ 14479077 (-)
G405588 NA other downstream 1045530 14114619 ~ 14119658 (-)
npy npy other downstream 1081342 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 1403631 13759761 ~ 13761557 (-)

Expression


Co-expression Network