tmem222b (tmem222,tmem222b,LOC108273317,LOC103043641,LOC105903612,LOC107550652,LOC107754919)


Basic Information

Item Value
gene id tmem222b
gene name tmem222,tmem222b,LOC108273317,LOC103043641,LOC105903612,LOC107550652,LOC107754919
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14481937 ~ 14491263 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927893.2
ATCCGCCAGACGCCAGCAGGAAGTGGCTgagagggggcggggcttgacGGTGATGGCGGATGTTGCTGAAATAGAGTCCGTGAAGAATTATCAAATAGCGTTTGAGAAGATCGACCTAACCGCCAGTCGCTATCCGTACTGTATCGTGTGGACACCAATCCCCGTGTTATCATGGCTCTTTCCGTTCATTGGGCACATGGGGATCTGCACATCAGCAGGCGTGATCCGTGACTTTGCTGGGCCTTACTTTGTATCGGAAGACAACATGGCGTTTGGAAGACCAACAAAGTACTGGATGCTGGATGTCAGCAAAGTATACGCCAGTGGCTCTAATGCTTGGGACACAGCAGTTCATGATGCTTCAGAGGAGTACAAACACAGAATGcACAACCTTTGCTGTGACAATTGTCACTCGCATGTTGCCATGGCATTGAACCTAATGCGCTATGACAATAGCACCTCGTGGAACATGGTGAACCTCTGCTTACTTGCCCTCATTAACGGCAAACATGTCAGCTGTGTTGGCTTTCTGAAGACCTGGCTGCCGTTCCTTATATTATGCAGCATCATTGTGTCCCTGGCTCTGTACATGAACTTGCGGTGACCACACAGGGGTAGTAAGAGAAAGGAGGGCATTGAGACCTCTGCATCCTGATGGAGATCCTGGTCTGGACCATAAAGTGGGACTCCAATGAATGTCAGCCGGACTACAGGGGACAACAAACTCGTCCACGTGCAGATGAGGAGCTCCACATCTGAAACCTAAATCTAAGCTTGTTTTTCAtaggatggagagagaaaacCCATTCTGGGTCCCTCGTCTCATTGTAATGTTAGGAATTCTATACTCAAATGCTTGTTTCCGAGGTTTGAAATTAGTGGTGCTGATTTATAGTTTGGTTGCAAATTGGATTATTATTCTGTGCCACAATCATAACCTCAGTTTAGACAATTTAATGCAACTAATTTTATATCTGCACAGAAACACCATACCCTCTGAAGCTATATTTTGTTCTAcctacatttctttttcttgataTCATTGTATCCTGTTTATGGAACttattgtctgtgtggtttCTTTCTACCGATTCTCTTTATGTGCTGCAGAACAGCATGTTTTCAAGGGCATTAGCATTTAAGTCATTTTATATGCAGATTTACCCTTTGCACTCAACTATTGTACTGCCATGCAAACATGGGATTTATGAGAACATTAGATTCATGAGAACATGAGATTATGGATTGTTGAGGTACATGTAATGTTAAATATTGGACAGCGCACTGCTGTAGTGGGTAGAGTTGCTGCATCACAGCTCCATAGTGCCAGGATAGATCCTGGGCTTGAGTTACTCTCTGTACCTCTGTGCACATTCTCACCgtatccatgtgggtttcctccggctTCTCCGGTTCCCCCACCTCCCAaacacatgccagtaggtggattggctatgctaaatttacccctcagtgtgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

symbol description
tmem222b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM222 (transmembrane protein 222).
tmem222 Predicted to be integral component of membrane.

NR:

description
PREDICTED: transmembrane protein 222-like

GO: NA

KEGG:

id description
K20726 TMEM222; transmembrane protein 222

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927893.2 True 1524 mRNA 0.45 6 14481937 14491263

Neighbor

gene id symbol gene type direction distance location
kdf1b LOC108273298 coding downstream 11119 14460392 ~ 14470818 (-)
nudc nudc,LOC107689540,LOC107700719 coding downstream 29566 14440800 ~ 14452371 (-)
arid1ab LOC108272722,LOC108415569 coding downstream 93471 14320865 ~ 14388466 (-)
tbc1d5 tbc1d5,LOC107592018,LOC107739565,LOC107748680 coding downstream 263767 14195955 ~ 14218170 (-)
dazl dazl coding downstream 286471 14172834 ~ 14195466 (-)
trnat-ugu_14 NA coding upstream 51954 14543217 ~ 14543289 (-)
trnat-ugu_15 NA coding upstream 54843 14546106 ~ 14546178 (-)
epb41a epb41,LOC107712606 coding upstream 60781 14552044 ~ 14586242 (-)
zbtb22b zbtb22b,LOC108272665,LOC101073910,LOC103355711,LOC104955937,LOC101155366 coding upstream 107232 14598495 ~ 14614761 (-)
ctdp1 ctdp1,LOC107552301,LOC107550068 coding upstream 131418 14622681 ~ 14637333 (-)
G405707 NA non-coding downstream 96287 14378892 ~ 14385650 (-)
G405681 NA non-coding downstream 152737 14256524 ~ 14329200 (-)
G405701 NA non-coding downstream 167103 14313739 ~ 14314834 (-)
LOC117596429 NA non-coding downstream 290182 14183486 ~ 14191755 (-)
G405575 NA non-coding downstream 404787 14076442 ~ 14077150 (-)
G405900 NA non-coding upstream 127386 14618649 ~ 14686310 (-)
G405901 NA non-coding upstream 128075 14619338 ~ 14654751 (-)
G405906 NA non-coding upstream 153590 14644853 ~ 14966111 (-)
G405909 NA non-coding upstream 196760 14688023 ~ 14720906 (-)
G405917 NA non-coding upstream 209005 14700268 ~ 14704312 (-)
tpbga LOC108272337 other downstream 2860 14475476 ~ 14479077 (-)
G405588 NA other downstream 362279 14114619 ~ 14119658 (-)
npy npy other downstream 398091 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 720380 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 923306 13556156 ~ 13558631 (-)
G405961 NA other upstream 476213 14967476 ~ 15013988 (-)

Expression


Co-expression Network