slc2a3a (slc2a3a,LOC108273342,LOC108439890,LOC107739512,LOC107693366,LOC107724104,LOC107665492,LOC107589470)


Basic Information

Item Value
gene id slc2a3a
gene name slc2a3a,LOC108273342,LOC108439890,LOC107739512,LOC107693366,LOC107724104,LOC107665492,LOC107589470
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12028221 ~ 12059395 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928212.2
TACGTCAAAGAGCAACGTGAGAGTCGCCACGTATCCACAGGGTGACAAAGACACACGAAAATACTCGATGAGTGTCAGTGGATGAGAGAGGCACGCGCACGAACGGATCGGTCACCGCGTCCAGGACAGccCAAGTGTTTCTGCATTTTGCATCGGAACCTGCGTGCAGGACTGCGCGTTCACGACTCATCTGCCACTCCCATTTCACTGGAACATGGAGGGGGAGAAGAAGGAAGTGACAGGCTATCTTCTGTTCTCTCTGGCCACGGCTGTTATTGGCTCCCTGCAGTTTGGCTACAACACAGGGGTCATCAATGCACCTGAGCAGAAACTGCGCACATTCTTCAACAACACATGGATGGAACGTTATGGGAAGCCCATCCAGCCTGGAATGTGCACCATCGTGTGGAGTTTAGCAGTGGCTATCTTCAGTGTGGGTGGAATGGTGGGCTCCTTCAGTGTTGGTGTCCTTGCCAACAAGTTTGGGCGACGCAATTCCATGTTTTTGGTGAATATCTTGGCCTTGATCGGTGGAGGACTCATGGGGCTTTGCACTCTTGCCTCTTCTTTTGAGATGGTTATCGCTGGCCGCTTGGTTATTGGCCTCTTCTGTGGCCTTTTCACTGGTCTCACCCCCATGTATGTTGGGGAGGTTTCTCCCACTCCTCTCCGGGGAGCTTTCGGCACTCTACACCAGCTTGGAGTGGTAATAGGCATCTTGATTGCACAGATCTTTGGCCTGGAGTTTCTGCTGGGCTCAGATAAATTGTGGCCGCTGCTGCTGGCTTTAACTGTGATCCCTGCTGTACTACAATGTTTGCTGCTACCCTTCTGCCCTGAGAGTCCACGCTATCTCCTCATTAACCTCAATAAAGAGGAACAGGCTCGCAAAGCATTGGTGCGTCTCCGTGGCTGTGAGGATGTGTCAAAGGACATGCAGGAGATGAAGGAAGAAAGTGTAAAAATGAATATGGAAAAGAGGGTGACCATCCCCGAGCTCTTCCGCACAGCCACGTATCGTCAGCCACTTCTCATTGCTATCATGCTTCAGCTTTCCCAGCAACTGTCCGGGATCAATGCTGTGTTCTACTACTCAACAGGTATTTTTGAGTCTGCTGGTGTGACCAAGCCAATATATGCTACAATCGGCGCTGGGGTTGTTAACACTGTTTTCACTGTGGTATCTCTCTTCCTTGTCGAAAGAGCCGGACGAAGGACTTTGCACCTTATTGGCTTGGGTGGCATGGCAGTCAGCGCCCTGCTAATGACCATCACCCTTGTATTGGACTACATCCCATCTCTGAACTACCTGAGCATTGCAGCAGTGTTTGCCTTTGTGGCTATGTTTGAGATGGGTCCAGGACCCATCCCATGGTTCATTGTTGCTGAGCTCTTCTCCCAAGGACCACGGCCTGCCGCCATGGCCATTGCAGGATGTTCCAACTGGACGGCCAACTTCCTTGTGGGCGTCAGTTTCCCAAAACTAAGGGAACTCTGCGGGCCATATGTTTTCATTATCTTCTTTatcttcctcatcctcttcttcatcttcacaTTCTTCCGTGTTCCTGAGACCAAGGGTCGGACCTTTGAAGAGATTGCTCAAGGCTTCAGTGGCGCTCCACCTCCTCCAAGCACCAGTGCACAGGAGGTTGATGTGGTCACAGTGCCTACCACTGCAGTGAAGGAGAAAGTCCCATTGGTGGCAGCAAATTCTGAAGCGATGGAGAAGCCAAGTTCATCTGGAAGCATGGCTTCAGAAGCTATGCCTGGTGAGGAGAAACCTGAATCTGCTACACAACCACTGGTTAAATCTGCTTCAGAGGAGAAATGCGATACTACTGTCCAGGAAAGTGTTTAGTAAAAagtgaagaattttttttgatGTTATAGTCGTAGTAGAAATGAACACTATGTCCACAGTGTCAGTAAAATgtattgaagtcatttttctgtGTTGATGGAGCTAGGGCAATGAAATCCTCATGAATTACTTATATGGCTTATATTAATATTGGACTGAACTTTGGGAAATTTAGTTTCCATCACAGTGTGCATATTATACATAATGAAACCTAGTTTAGGTTTATACTCAAATAAGAGAGTGATAGCTAGTTTTTGTACACAAGTCcatgaaaaatgtttgaaaaaagtATGTAGGAGTTgcttaaaaatgaatatagttGCTGCAGTAATAGTGGTAAGCACAAAGTAGTAATACTTCCAAATGTAAACACATAATTATGAGTTAGTACATAATGTGGCCTCATAATTGCAACTTAATTCAAAGTAACTGCTGCCACCAACAAACTATTAATTCAATGTGCAACTTATAGGTCATTTAAAACTCCCAGACATGAAGGTAACAGAAGTTTTTGAAAAATTACAGGGGTAAAGGCAGAGAAATATCTTTTTCCCCATGTTTTCTTAAGTGTTTTGTTAAGTGTGTTTCTATGCCatacaaatgtttaaattaagGCAGTTTAGAGGGGTTTATGTTTCAGAAATGAGTGAATTTTAAACTGCACCTTGCTTGATTAGTGATACCCTTGATTACCTCtgctctatttatttatttatttatttatttatttatgactatatgtaatatatttttatttttgttgcttGATATATTGATTATAAGatatatttgtgtaaaaatgaaaaatgtatttattgctgtGCACTTTTAAGGCCcaagagagataaaaaatacagctttttcCTGTCTTAATGTCAAATGTGTGTCTATAGTACTGTATGTCTTGTACCAAGGTGAACCTTTCTTGTCAAGATGATGTGCAATTAATGTATCTGATTTTTCTCCTTGAAGGCAAAATTAGTGTGTTTTAGGTCTATGTATACTTATAACAGCCTTTTCAGTCTGGATGCATCAAATCAAGGGGGCTAATCACCTAGCAATATATTTTAAGAAGTAATTTTAGAAGCCTAAAATggaacaaatttattttttttattctatgcCATAGAACAGGGGTCTTATCCCCTGTTCTTATGCAAAAAGAgtcagtgtggctgcaggctttcacttgtttaatcagttcatcttagTCTCCAATCAACTATCAAGTGTGCGTCCAGTTTGGCTGTAAtaaaagcctgcagccacatttggccctttctggataagattgaagacccctgctatagaatgtaaagaaaatattacCAAATATTACTCATACATTGCCATCACCCCCTGCATTATTCGCTTCACTGTAAACACCATTTCGTGTGCAAAGCTATAGAGCTATTttgatataaatacatattttaaatgttaagtaaatgtaTCTATATTTAAATTcttattgatgtttttttcttgattcCTCTGCTGCTTCTGCTACAAGACAAATATTAAGAGAGAAATCAAGTAGAAAGAagtatgtgtgtacacacacacacacacacacacacacacacacacacatattttttccccctcagtgaAACAGTCAACATTTCtaaatgcttgtgtgtgtaacagattGTCCCTCTAATTActgagtgaataaataaatacaatggtTGTGAA

Function

symbol description
slc2a3a Predicted to enable transmembrane transporter activity. Acts upstream of or within brain development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including blood; digestive system; muscle; nervous system; and spinal cord neural tube. Orthologous to human SLC2A3 (solute carrier family 2 member 3).

NR:

description
solute carrier family 2, facilitated glucose transporter member 3 isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08142 SLC2A3, GLUT3; MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928212.2 True 3562 mRNA 0.42 11 12028221 12059395

Neighbor

gene id symbol gene type direction distance location
LOC113535156 LOC108272362 coding downstream 23741 12001016 ~ 12004480 (-)
usf2 usf2,LOC108273297,LOC107739527,LOC107656615,LOC107724110,LOC107693382 coding downstream 32229 11983194 ~ 11995992 (-)
ago3b ago3b,LOC108272767,LOC103367052,LOC107379323,LOC108413244,LOC106605151,LOC100706402,LOC108444400,LOC103034630,LOC567622,LOC106582842 coding downstream 89800 11911671 ~ 11938421 (-)
lipea LOC108272659,LOC108444403 coding downstream 145712 11867632 ~ 11882509 (-)
LOC113535038 LOC108272660,LOC108444404,LOC103037120,LOC100707815,LOC101472794,LOC103393952,LOC106588242,LOC103360126 coding downstream 164454 11844553 ~ 11863767 (-)
si:dkey-14o18.2 si:dkey-14o18.2,LOC108272430,LOC108439891,LOC107589391,LOC107693367,LOC107599522,LOC107724105 coding upstream 13529 12072924 ~ 12084163 (-)
cacng8a LOC108272562,LOC107724111,LOC107589386,LOC107739619,LOC107693368,LOC108439892,LOC107656603,LOC107599529,LOC103022608 coding upstream 48503 12107898 ~ 12119870 (-)
dbpa LOC108272905,LOC101068247 coding upstream 232347 12291742 ~ 12307057 (-)
znf865 znf865,LOC108272906,LOC108439897,LOC107724093,LOC107589382,LOC107599536,LOC107656606,LOC105902018 coding upstream 249400 12308795 ~ 12317891 (-)
shisa7b LOC108272955,LOC108439898 coding upstream 269763 12329158 ~ 12348572 (-)
G404243 NA non-coding downstream 27711 12000266 ~ 12000510 (-)
G404241 NA non-coding downstream 30751 11997070 ~ 11997470 (-)
G404235 NA non-coding downstream 57257 11970742 ~ 11970964 (-)
G404198 NA non-coding downstream 206795 11821050 ~ 11821426 (-)
G404060 NA non-coding downstream 262454 11763111 ~ 11765767 (-)
G404282 NA non-coding upstream 66062 12125457 ~ 12125840 (-)
G404421 NA non-coding upstream 215873 12275268 ~ 12275502 (-)
G404667 NA non-coding upstream 455076 12514471 ~ 12515210 (-)
G404681 NA non-coding upstream 515685 12575080 ~ 12577284 (-)
G404682 NA non-coding upstream 517137 12576532 ~ 12578806 (-)
si:ch73-347e22.4 NA other downstream 238042 11777369 ~ 11790179 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 2611968 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 2743728 9227395 ~ 9284493 (-)
G402673 NA other downstream 2866751 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 4110528 7869403 ~ 7917693 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 86203 12145598 ~ 12256372 (-)
G404644 NA other upstream 371600 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 455921 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 511069 12570464 ~ 12570536 (-)
trnav-cac_23 NA other upstream 512198 12571593 ~ 12571666 (-)

Expression


Co-expression Network