lipea (LOC108272659,LOC108444403)


Basic Information

Item Value
gene id lipea
gene name LOC108272659,LOC108444403
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11867632 ~ 11882509 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928241.2
gagtgtgtgaggatgtatgttggagtgtgtgagtgagtgtgtgtttgtgtgtgtcagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgacagcaggTAAGCCAATGAGCCTGGAGGTTCAGATGTCTCTCTGTAGGAAATGCAGTACACTGCACAGGGCGTGAGCGCTGTTCTGTCCCAGCCGGTGTAGTGCACTTGTGGAGGAAGTGTGGAAACatttcagctttgtacatccgCCTTCCTTCTGAACGCTTTCTTGAGTGGTCTGTTTTTCGGTTGTGACGCGAGTCTGTTggatatttgtacatttttaaagtgtaaGTTTTGCGGAAGttctcagcagcagcagtgttggtggtgctggtggtgttgGGAGATGGTGTGAAAGCTACACGTCAGGACTCGGCTTACCCGAGAACATCTTCACCTGCTCACACGGTCAGAGCTGTACACTCTGCAGTCACCTAAGCATGGATCATCGCCATGTATTCAATACCCTGGAGACAGTGTGTGAGGAAACCATCTCTGCCATCTCTATGCATTCAAGTTTGCTACAGAATGATGCCACCAGTCAACTGCTGGCAACAATGAGACGCATTCATGAGCATGGGCAAGCTGTCAATGCCCTGGTCAGTGGCTTTGCCGCTGTGTATCACCATTTTGATTTTAACACAGACACACCTGCAAATGGCTACCGCACCTTAGTCAAGGTGGTCCTTTCCTGTGTACTCTATATAATCCAGAAGGGCCGCTACATTGCCTCCAACTGCGGGGGGATGTTTTTTCGTGTGGAGCACAATGCTGGCGAGATGGAGGCGTACTGCATGGCGCTTTGTCAGCTGCGTGCACTGCTCTACCTGGCACAGCGTTTACTCAGCAATAACAAACATGGGCAGCTCCACTCGCTGGAAGACGAAGGTCTGAGCAGGAGGTTCGTCAACGAGTACACATCTATGCACAAGGCTTGTTTCTATGGGCGTTGCCTGGGCTTTCAGttctctccttctctcaggCCTTTCCTACAGACAGTGGTCATCAGTATGGTGTCATTTGGAGAGAACTACAAGAAACAGCAGACTAGATTAGgaaGGGCAGCACTCTCGGTCATTACTTCGGGGAAGTACGTGGTGGATCCTGAGCTGAGGGGGGCGGAGTTTGAACGCATCACTCAGAACCTGGATATGCATTTCTGGAAGACCTTTTGGAACATCACTGAGACAGAACTGATATCAAGTTTAGCGAGCATCAGGTCACATGCTGTGCAGGTGAATTTCACTCTAACTATTCCAGGTGAGCCACTGAGTTTACCTCTAGCCTCAGACACAAGTCTCTCAGTCACAGTGTCGCCTCCCATTGCTCACTGGGGGCCGGGACCTGTTCACGTACGCCTCATCTCTCACATGCTGCGTCAGGGACAGGATAGTGCTGAGTTGCTCTCGTTCTCTCGATCTCAGCTACCTCTTTCTGTAGGCTTCAGGACTCAGAGTGGCCCTCTCTCTCCATGGCTTCTCATCCACTTTCATGGGGGCGGATTTGTGGCCCAGACCTCTAAATCTCACGAAAGTTACCTAAAGAGCTGGTCAAAGGATTTGAATGTACCCATTCTATCCGTGGATTACTCACTGGCTCCTGAAGCCCCCTTTCCTCGGGCTCTGGAAGAATGTTTCTATGCTTACTGCTGGGCTCTAAAGAACTGTCGATTACTGgGCTCGACAGCAGAACGTGTGTGTCTAGCAGGAGACAGTGCTGGTGGGAACCTGTGCATCACTGTCTCTATGAAGGCCATGTCTCATGGAGTAAGAACCCCCGATGGCATCATGGCTGCCTACCCAGCGACACTCCTGACAACTGACGCCTCACCGTCACGGTTTCTTACGCTCATCGACCCAGTGCTGCCTCTTAGTGTGCTTTATAAGTGTGTCAGTGCATACACTGGTATGGATTGTGTGTCGGTGCAGCCCAGGCAGCAGCTGGACAGTCTGAGCACTCTGGGACGGGACACTGCGCTTTTTCTTGAGAACATCACACAAGGAGCTTCCAACTGGCTGCAGTCGCTCCTTGACCGCACGTCTACCTCACCCGCTAGATCATCTGATGGTTCTCAAAATGCCGTGCCTCATTCTGCTGACATGGTGCAGGGCCCAAGGGAATTCCCAGAAGGCTTTGAACCACTGCGCTCTGGGTGTCTGGCAGAGATTCATACCCCCTGCACTCCTATCATGAAGAACCCATTTGTGTCTCCTCTACTTGCACCTGACAGTCTCCTCAGGGGACTGCCACCTGTACATCTAGTGGCTTCAGCTTTGGATGCTCTGTTGGATGATTCTGTGATGTTTGCCAAAAAGCTGAAGAGCATTGGCCAACCAGTGACCTTGACTGTAGTGGAGGACATCCCACATGGCTTCCTCAGCCTTTCACAGCTCTGCAAAGAGACTAAGGATGCATCGGACATTTGCGTAGCACGAATCAGAGAAGTCTTTGAGCTAGATGCACCACAGTAAAGCTCTCTTATCGAATAAGCCTAATGATCACACATTAAATAGTCCTAATAAACTGACAAAGCAGTGTTATGAGAAGGAAAGAGGTTGATAAGAAAAAATGTAAGGAactgtgggaaaaaaattagaaaaacacAGTTCATTAGACTAAAGATACCTCAAAATGGCACAGTTTCATGTTGTAACTTGAAGTACCGAAGTTAGGAACCTCTGCACTGTGAAAGTACAGCAAAAGAGAGACTGTGTTTACTGTGCAAATGTCGGAACAAACTAACTTaggttttatgtttatttatttcttaatgttCTACAAATTCACCACATGTGCCTCTTTGGTCATTTCAGACCTTTCAGAACTTTGTGTtttgccatccctcccacccaaagaGTACGGCCAGTTTAGCTCCCTTGACACTCAATACTTTTCCCCTGCACCACTTGAGAGTCTACTTGCCTTAAGCAAAACATGTGCTGTTTAAGTGTCCCTGTGTTATAATTAGGCATTTTTCAACTCCAGTTTGATTTGGTATTCATGGAAATCCCTTTAATTCAGAAAAACATTCGTATGCTACTCGtgcttctgagtgtgtgtaaatttacacgtaagaagactaactaatgtaaacctcgacttgatggacttcaaatcatatcatttgcatggcttactgcatttttatatatggaatatactgtcgaggttaaatttttattacatttacagcatttagcagatgtccttatccagagcgacttatagaagGGCTTGTCTCTATCAAAagcacatcctcatgctagtttaCTAGgccagggactaagaataccatcgagaacattttgttaaaaccagttgttttatattattggtatttattaaagaacataaaaaataaagaaagcaagctagcacaaacccataaatttagacaaataaaatgaatcattcaattattacaaaagaaatggtgcAGTATAAACAGAGGATGGACCAGTCTGTCTGCACAGAGCCGTAAGCCTTAAACAAACACCTCAGCTAACGAAAGATTTAGcacttgcttattattattaatattatatatttaaaaatatttttattggcatagaaatTAGTCAAAATAACCtccacttctgtctttcagcctttaccctgattattcatttcatgttcctagctgtctgtgcacttgaccttttatgggGTTTTGTGGGCGGCACTAAATGCAACATTCAACTCAATGTCTTTGAAGGCCAAACTGCCTCTTTTGATTTAAGACATTGATGAATAATGTGCAATGTGTAAATCTGGTATTAACACTTCAACTTGGAGAGTTTGTCCATTTTTGGCTGGTGTagagttaataaaaaataatctctgTGTCTTTGTGGATTTTAAGTATATTGAAAACAAACTCAGTAGGTGCTTTCATTTGAATAGGTGATGGTTTTGAGGAAAGCTCCAAATTCACATGAATTTTCACAAATAAAGAGATGtctgaattaattaattcatcattaatgTCTGAATTATAACTGACAAAATTTGGATGCATCcgctttaaatgttttacatgtgCAAAAGAAATCTGTATATTAGGGCACAGCTACTTTGGTATGGCATTAATAATGAATGCTGTGTATTTTACTACCACTTAACAGCctttttataacattataacagcCACTTATTTCTAATCAGCTGTCAATAGACCacttgtgtttgtatttatatttcttcatatttttaagGATTCAGGACAACTTCAGAGTGTTTCAACTTTTCAGGAATGTTTTTTCCTGTCTCacagctaataaatataattttggaCATGCTTTGAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016298 lipase activity molecular_function

KEGG:

id description
K07188 LIPE, HSL; hormone-sensitive lipase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928241.2 True 4334 mRNA 0.44 11 11867632 11882509

Neighbor

gene id symbol gene type direction distance location
LOC113535038 LOC108272660,LOC108444404,LOC103037120,LOC100707815,LOC101472794,LOC103393952,LOC106588242,LOC103360126 coding downstream 3865 11844553 ~ 11863767 (-)
tomm40l tomm40,LOC108272662,LOC108444390,LOC105028272,LOC106588243,LOC105902030 coding downstream 24687 11832206 ~ 11842945 (-)
trnay-gua_21 NA coding downstream 43669 11823876 ~ 11823963 (-)
trnay-gua_20 NA coding downstream 45168 11822377 ~ 11822464 (-)
trnay-gua_19 NA coding downstream 46668 11820877 ~ 11820964 (-)
ago3b ago3b,LOC108272767,LOC103367052,LOC107379323,LOC108413244,LOC106605151,LOC100706402,LOC108444400,LOC103034630,LOC567622,LOC106582842 coding upstream 29162 11911671 ~ 11938421 (-)
usf2 usf2,LOC108273297,LOC107739527,LOC107656615,LOC107724110,LOC107693382 coding upstream 100685 11983194 ~ 11995992 (-)
LOC113535156 LOC108272362 coding upstream 118507 12001016 ~ 12004480 (-)
slc2a3a slc2a3a,LOC108273342,LOC108439890,LOC107739512,LOC107693366,LOC107724104,LOC107665492,LOC107589470 coding upstream 145712 12028221 ~ 12059395 (-)
si:dkey-14o18.2 si:dkey-14o18.2,LOC108272430,LOC108439891,LOC107589391,LOC107693367,LOC107599522,LOC107724105 coding upstream 190415 12072924 ~ 12084163 (-)
G404198 NA non-coding downstream 46206 11821050 ~ 11821426 (-)
G404060 NA non-coding downstream 101865 11763111 ~ 11765767 (-)
G403981 tpm3,LOC100305075,LOC107748711,LOC107693397,LOC108440886 non-coding downstream 171441 11668763 ~ 11696191 (-)
G403982 NA non-coding downstream 186636 11679255 ~ 11680996 (-)
G403893 NA non-coding downstream 334616 11531293 ~ 11533016 (-)
G404235 NA non-coding upstream 88233 11970742 ~ 11970964 (-)
G404241 NA non-coding upstream 114561 11997070 ~ 11997470 (-)
G404243 NA non-coding upstream 117757 12000266 ~ 12000510 (-)
G404282 NA non-coding upstream 242948 12125457 ~ 12125840 (-)
G404421 NA non-coding upstream 392759 12275268 ~ 12275502 (-)
si:ch73-347e22.4 NA other downstream 77453 11777369 ~ 11790179 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 2451379 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 2583139 9227395 ~ 9284493 (-)
G402673 NA other downstream 2706162 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 3949939 7869403 ~ 7917693 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 263089 12145598 ~ 12256372 (-)
G404644 NA other upstream 548486 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 632807 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 687955 12570464 ~ 12570536 (-)
trnav-cac_23 NA other upstream 689084 12571593 ~ 12571666 (-)

Expression


Co-expression Network