u2af2b (u2af2,u2af2b,LOC103026862,LOC107656609,LOC108439900)


Basic Information

Item Value
gene id u2af2b
gene name u2af2,u2af2b,LOC103026862,LOC107656609,LOC108439900
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12399540 ~ 12414792 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928271.2
TCCAGCGCAAACGCAGTGCACTTCACTGTTCCACACGGAGCCATTTTGGATCCAGCCACATTTCACTTCCGCCTGCGCAGAGAGAAACGAACCTGCTGTAAACTAGCTACGCTGAGTCGCTCGCCTAGCTGGTATTGTATTTGTGCGGAGGAttattcattaacattttatactttatttcaGCGTACACACAAGAAAGAAATTCAGttatatattcacatatttgtCTGTTATTTAGCTATAAAGGGTGGAAGGTTGTTTTTGCGCGAGCTTCGAATCAGCTAGTCAGtcttgttagctagttagctaacttagcagaacaggaaaaaaaaaaacaacaacacctCAATATAACAACGCGACTTAGAGGAAGTTTCTGTGCAGCTAATTGTGCATGCAGCTTTAATAAACCCAGGTTTCTCCGTTTGGCCGAATGTTTCATAACAGACAAAGACATCTCACTTTTGAAGTAAGATAACGTGGTCGGCTAAGCGTTCCCAGGTTTCACTCGCTCCATTCATCCGCTGCGAATTCAAAATGTCGGAGTTTGACGAATTTGAGAGACAACTGACCGAAAACAAACAAGAGCGGGACAAAGAGAATAGGCACAGGCGTCGGAGTGGCTCGCGTAGCCGTAGTCGTgaaaggaagaggaggagcaggGAGAGGAGGAGCAGGGAGCGACGCAGCAGCAGCAAAGATCGCAGGCATAGACGCAGTCGTTCCCCACcgagggagaagaagaagaaaatcaaaaaGTACTGGGATGTTCCTCCTCCAGGCTTTGAGCACATCACACCGATGCAGTACAAGGCCATGCAGGCTGCTGGGCAGATTCCTGCCACAGCACTGCTGCCCACTATGACTCCAGATGGACTGGCAGTTACACCTACACCAGTGCCTGTAGTAGGCAGCCAGATGACCCGCCAGGCTCGGAGGCTGTATGTGGGCAACATCCCCTTCGGCATCACAGAGGAATCGATGATGGACTTCTTCAACGCTCAAATGAGACTAGGGGGTCTTATTCAGGCTCCAGGAAACCCCGTCCTTGCTGTCCAGATTAACCAGGATAAGAACTTTGCCTTCCTTGAGTTGCGCTCAGTGGACGAGACCACACAGGCAATGGCGTTTGATGGCATCATATTCCAAGGCCAGAGTCTGAAGATCCGCCGGCCACACGATTACCAGCCGTTGCCAGGCATGAGCGAGAACCCCAGTGTGTATGTGCCAGGTGGGTTTACTGgAGTGGTGTCCACTGTAGTCCCTGACTCTGCTCATAAGCTTTTTATTGGAGGCCTGCCCAACTATCTCAGTGACGACCAGgtaAAAGAGTTGTTGACGTCCTTTGGGCCTTTAAAAGCATTCAACCTAGTGAAGGACAGTGCCACAGGGCTCTCCAAAGGCTATGCCTTCTGCGAATATGTTGATGTCAATCTTAACGATCAGGCTATTGCAGGACTAAATGGGATGCAGTTAGGGGATAAGAAGCTCCTGGTCCAGAGAGCAAGTGTAGGAGCCAAGAACGCAACTCTGACAAGCATAAACGAGACCCCGGTGACGCTTCAGGTACCAGGCCTGATGAACAGCTCTGTGAATCAGATGGGTGGAATTCCCACTGAGGTTCTGTGCCTGATGAACATGGTGGCTCCAGAGGAACTTCTGGATGATGACGAGTACGAAGAGATTATGGAGGACGTCAGGGACGAGTGCTCCAAATATGGTCAGGTCAAGAGCATCGAGATCCCTCGCCCTGTCGACGGCCTGGAGATCCCTGGAACTGGAAAGATCTTCGTGGAGTTCACAACAGTTTTTGACTCCCAGAAAGCCATGCAAGCCTTGACGGGGAGGAAGTTTGCCAACAGAGTGGTTGTGACCAAATACTGCGACCCTGATGCCTACCACCGCCGAGATTTTGGCTAGATCAGAATGCATGGGAGCGGAGAGAAGGGGAGTGTGCGGCGCAGGAGAAACCAGATGAAAGGCTGTATTATGACCGAGGAGTGAATGGAGGGATGGCAAAAGGGGGATCTTTTCTTGTAGTTCAAGGTGGCATTtcatgttcagtttttttttttttttttttttttttaaaagcagaaatAGCTTTGGCGCAATGagtttgcattttaataaagcGGGGATTATTGAGTTTATTAATTTGTCTAATTGCATATTGAACAAAATTGTTTAGAAGAgtgggtggggtgggggggagGAATTACAGTACATAATGCTCTAAAAGGACAGAATGTTGTCAATGGCATGAGTGAAGGAAATAAATTGCTTCCTTTCACTTTACTTTGATCCCTCTATTGTCATACAATTTTGCTGTTGGTGACCTAACCACCTTGATGCTACTACACTCTCaatttttcagtctttttatCTCCGAAATTAGTTTAGTTCAACTGTGTGTTAGTTTCTATCCAGCTCTGTCTGTCCTGTTCCCAGTACACGACTGCCTCTTATATTGGTAATGTAACTTCAAGTCTAGCATGGCACCTTTGTGTCTCTCTATGTGTGAACATAACCCTCTTTTGATAATAAACTTAGTGAGAATTTGAAAAAGTTGATCAGTGGACTGCATTCTTCTTGGTTGattacagtaaatacagtaatTTACATGTTATATTAAAAGAAGAAATGTCTTTTAGCTATTCACTTGAAAGATAAGAGCTCCAAATTCAAACTTTTCCCCTAAAACTGCAGTATATGATAGCTGTAATGGATTTGTTCTGTATCTCATATTTTTGTTCAAAAATACTTTTCATACTATTGTAATGAAGTGATGTCCAGACATTGCTTATTTGAAAccagacagagaaaaatatgGATTCTGACCTGACAGTCTtagtataatgaaataaataatagactTGCTTGATTTCCACTTTTACTTTATGTAAGTAGTTTAATGTACGTTTTAAGCACACTGTAGTATATGCTTTAACAATACTGTGTAAATAAAGATCTCACAGATTTCA
>XM_026928272.2
CAGCGCAAACGCAGTGCACTTCACTGTTCCACACGGAGCCATTTTGGATCCAGCCACATTTCACTTCCGCCTGCGCAGAGAGAAACGAACCTGCTGTAAACTAGCTACGCTGAGTCGCTCGCCTAGCTGGTATTGTATTTGTGCGGAGGAttattcattaacattttatactttatttcaGCGTACACACAAGAAAGAAATTCAGttatatattcacatatttgtCTGTTATTTAGCTATAAAGGGTGGAAGGTTGTTTTTGCGCGAGCTTCGAATCAGCTAGTCAGtcttgttagctagttagctaacttagcagaacaggaaaaaaaaaaacaacaacacctCAATATAACAACGCGACTTAGAGGAAGTTTCTGTGCAGCTAATTGTGCATGCAGCTTTAATAAACCCAGGTTTCTCCGTTTGGCCGAATGTTTCATAACAGACAAAGACATCTCACTTTTGAAGTAAGATAACGTGGTCGGCTAAGCGTTCCCAGGTTTCACTCGCTCCATTCATCCGCTGCGAATTCAAAATGTCGGAGTTTGACGAATTTGAGAGACAACTGACCGAAAACAAACAAGAGCGGGACAAAGAGAATAGGCACAGGCGTCGGAGTGGCTCGCGTAGCCGTAGTCGTgaaaggaagaggaggagcaggGAGAGGAGGAGCAGGGAGCGACGCAGCAGCAGCAAAGATCGCAGGCATAGACGCAGTCGTTCCCCACcgagggagaagaagaagaaaatcaaaaaGTACTGGGATGTTCCTCCTCCAGGCTTTGAGCACATCACACCGATGCAGTACAAGGCCATGCAGGCTGCTGGGCAGATTCCTGCCACAGCACTGCTGCCCACTATGACTCCAGATGGACTGGCAGTTACACCTACACCAGTGCCTGTAGTAGGCAGCCAGATGACCCGCCAGGCTCGGAGGCTGTATGTGGGCAACATCCCCTTCGGCATCACAGAGGAATCGATGATGGACTTCTTCAACGCTCAAATGAGACTAGGGGGTCTTATTCAGGCTCCAGGAAACCCCGTCCTTGCTGTCCAGATTAACCAGGATAAGAACTTTGCCTTCCTTGAGTTGCGCTCAGTGGACGAGACCACACAGGCAATGGCGTTTGATGGCATCATATTCCAAGGCCAGAGTCTGAAGATCCGCCGGCCACACGATTACCAGCCGTTGCCAGGCATGAGCGAGAACCCCAGTGTGTATGTGCCAGgAGTGGTGTCCACTGTAGTCCCTGACTCTGCTCATAAGCTTTTTATTGGAGGCCTGCCCAACTATCTCAGTGACGACCAGgtaAAAGAGTTGTTGACGTCCTTTGGGCCTTTAAAAGCATTCAACCTAGTGAAGGACAGTGCCACAGGGCTCTCCAAAGGCTATGCCTTCTGCGAATATGTTGATGTCAATCTTAACGATCAGGCTATTGCAGGACTAAATGGGATGCAGTTAGGGGATAAGAAGCTCCTGGTCCAGAGAGCAAGTGTAGGAGCCAAGAACGCAACTCTGACAAGCATAAACGAGACCCCGGTGACGCTTCAGGTACCAGGCCTGATGAACAGCTCTGTGAATCAGATGGGTGGAATTCCCACTGAGGTTCTGTGCCTGATGAACATGGTGGCTCCAGAGGAACTTCTGGATGATGACGAGTACGAAGAGATTATGGAGGACGTCAGGGACGAGTGCTCCAAATATGGTCAGGTCAAGAGCATCGAGATCCCTCGCCCTGTCGACGGCCTGGAGATCCCTGGAACTGGAAAGATCTTCGTGGAGTTCACAACAGTTTTTGACTCCCAGAAAGCCATGCAAGCCTTGACGGGGAGGAAGTTTGCCAACAGAGTGGTTGTGACCAAATACTGCGACCCTGATGCCTACCACCGCCGAGATTTTGGCTAGATCAGAATGCATGGGAGCGGAGAGAAGGGGAGTGTGCGGCGCAGGAGAAACCAGATGAAAGGCTGTATTATGACCGAGGAGTGAATGGAGGGATGGCAAAAGGGGGATCTTTTCTTGTAGTTCAAGGTGGCATTtcatgttcagtttttttttttttttttttttttttaaaagcagaaatAGCTTTGGCGCAATGagtttgcattttaataaagcGGGGATTATTGAGTTTATTAATTTGTCTAATTGCATATTGAACAAAATTGTTTAGAAGAgtgggtggggtgggggggagGAATTACAGTACATAATGCTCTAAAAGGACAGAATGTTGTCAATGGCATGAGTGAAGGAAATAAATTGCTTCCTTTCACTTTACTTTGATCCCTCTATTGTCATACAATTTTGCTGTTGGTGACCTAACCACCTTGATGCTACTACACTCTCaatttttcagtctttttatCTCCGAAATTAGTTTAGTTCAACTGTGTGTTAGTTTCTATCCAGCTCTGTCTGTCCTGTTCCCAGTACACGACTGCCTCTTATATTGGTAATGTAACTTCAAGTCTAGCATGGCACCTTTGTGTCTCTCTATGTGTGAACATAACCCTCTTTTGATAATAAACTTAGTGAGAATTTGAAAAAGTTGATCAGTGGACTGCATTCTTCTTGGTTGattacagtaaatacagtaatTTACATGTTATATTAAAAGAAGAAATGTCTTTTAGCTATTCACTTGAAAGATAAGAGCTCCAAATTCAAACTTTTCCCCTAAAACTGCAGTATATGATAGCTGTAATGGATTTGTTCTGTATCTCATATTTTTGTTCAAAAATACTTTTCATACTATTGTAATGAAGTGATGTCCAGACATTGCTTATTTGAAAccagacagagaaaaatatgGATTCTGACCTGACAGTCTtagtataatgaaataaataatagactTGCTTGATTTCCACTTTTACTTTATGTAAGTAGTTTAATGTACGTTTTAAGCACACTGTAGTATATGCTTTAACAATACTGTGTAAATAAAGATCTCACAGATTTCA
>XM_034301648.1
AAAGCAAGGCTTTCCAGCGCAAACGCAGTGCACTTCACTGTTCCACACGGAGCCATTTTGGATCCAGCCACATTTCACTTCCGCCTGCGCAGAGAGAAACGAACCTGCTGTAAACTAGCTACGCTGAGTCGCTCGCCTAGCTGACAAAGACATCTCACTTTTGAAGTAAGATAACGTGGTCGGCTAAGCGTTCCCAGGTTTCACTCGCTCCATTCATCCGCTGCGAATTCAAAATGTCGGAGTTTGACGAATTTGAGAGACAACTGACCGAAAACAAACAAGGTGACGGCGTTAACGGCCATGAGCGGGACAAAGAGAATAGGCACAGGCGTCGGAGTGGCTCGCGTAGCCGTAGTCGTgaaaggaagaggaggagcaggGAGAGGAGGAGCAGGGAGCGACGCAGCAGCAGCAAAGATCGCAGGCATAGACGCAGTCGTTCCCCACcgagggagaagaagaagaaaatcaaaaaGTACTGGGATGTTCCTCCTCCAGGCTTTGAGCACATCACACCGATGCAGTACAAGGCCATGCAGGCTGCTGGGCAGATTCCTGCCACAGCACTGCTGCCCACTATGACTCCAGATGGACTGGCAGTTACACCTACACCAGTGCCTGTAGTAGGCAGCCAGATGACCCGCCAGGCTCGGAGGCTGTATGTGGGCAACATCCCCTTCGGCATCACAGAGGAATCGATGATGGACTTCTTCAACGCTCAAATGAGACTAGGGGGTCTTATTCAGGCTCCAGGAAACCCCGTCCTTGCTGTCCAGATTAACCAGGATAAGAACTTTGCCTTCCTTGAGTTGCGCTCAGTGGACGAGACCACACAGGCAATGGCGTTTGATGGCATCATATTCCAAGGCCAGAGTCTGAAGATCCGCCGGCCACACGATTACCAGCCGTTGCCAGGCATGAGCGAGAACCCCAGTGTGTATGTGCCAGGTGGGTTTACTGgAGTGGTGTCCACTGTAGTCCCTGACTCTGCTCATAAGCTTTTTATTGGAGGCCTGCCCAACTATCTCAGTGACGACCAGgtaAAAGAGTTGTTGACGTCCTTTGGGCCTTTAAAAGCATTCAACCTAGTGAAGGACAGTGCCACAGGGCTCTCCAAAGGCTATGCCTTCTGCGAATATGTTGATGTCAATCTTAACGATCAGGCTATTGCAGGACTAAATGGGATGCAGTTAGGGGATAAGAAGCTCCTGGTCCAGAGAGCAAGTGTAGGAGCCAAGAACGCAACTCTGACAAGCATAAACGAGACCCCGGTGACGCTTCAGGTACCAGGCCTGATGAACAGCTCTGTGAATCAGATGGGTGGAATTCCCACTGAGGTTCTGTGCCTGATGAACATGGTGGCTCCAGAGGAACTTCTGGATGATGACGAGTACGAAGAGATTATGGAGGACGTCAGGGACGAGTGCTCCAAATATGGTCAGGTCAAGAGCATCGAGATCCCTCGCCCTGTCGACGGCCTGGAGATCCCTGGAACTGGAAAGATCTTCGTGGAGTTCACAACAGTTTTTGACTCCCAGAAAGCCATGCAAGCCTTGACGGGGAGGAAGTTTGCCAACAGAGTGGTTGTGACCAAATACTGCGACCCTGATGCCTACCACCGCCGAGATTTTGGCTAGATCAGAATGCATGGGAGCGGAGAGAAGGGGAGTGTGCGGCGCAGGAGAAACCAGATGAAAGGCTGTATTATGACCGAGGAGTGAATGGAGGGATGGCAAAAGGGGGATCTTTTCTTGTAGTTCAAGGTGGCATTtcatgttcagtttttttttttttttttttttttttaaaagcagaaatAGCTTTGGCGCAATGagtttgcattttaataaagcGGGGATTATTGAGTTTATTAATTTGTCTAATTGCATATTGAACAAAATTGTTTAGAAGAgtgggtggggtgggggggagGAATTACAGTACATAATGCTCTAAAAGGACAGAATGTTGTCAATGGCATGAGTGAAGGAAATAAATTGCTTCCTTTCACTTTACTTTGATCCCTCTATTGTCATACAATTTTGCTGTTGGTGACCTAACCACCTTGATGCTACTACACTCTCaatttttcagtctttttatCTCCGAAATTAGTTTAGTTCAACTGTGTGTTAGTTTCTATCCAGCTCTGTCTGTCCTGTTCCCAGTACACGACTGCCTCTTATATTGGTAATGTAACTTCAAGTCTAGCATGGCACCTTTGTGTCTCTCTATGTGTGAACATAACCCTCTTTTGATAATAAACTTAGTGAGAATTTGAAAAAGTTGATCAGTGGACTGCATTCTTCTTGGTTGattacagtaaatacagtaatTTACATGTTATATTAAAAGAAGAAATGTCTTTTAGCTATTCACTTGAAAGATAAGAGCTCCAAATTCAAACTTTTCCCCTAAAACTGCAGTATATGATAGCTGTAATGGATTTGTTCTGTATCTCATATTTTTGTTCAAAAATACTTTTCATACTATTGTAATGAAGTGATGTCCAGACATTGCTTATTTGAAAccagacagagaaaaatatgGATTCTGACCTGACAGTCTtagtataatgaaataaataatagactTGCTTGATTTCCACTTTTACTTTATGTAAGTAGTTTAATGTACGTTTTAAGCACACTGTAGTATATGCTTTAACAATACTGTGTAAATAAAGATCTCACAGATTTCA
>XM_034301649.1
AGCGCAAACGCAGTGCACTTCACTGTTCCACACGGAGCCATTTTGGATCCAGCCACATTTCACTTCCGCCTGCGCAGAGAGAAACGAACCTGCTGTAAACTAGCTACGCTGAGTCGCTCGCCTAGCTGGTATTGTATTTGTGCGGAGGAttattcattaacattttatactttatttcaGCGTACACACAAGAAAGAAATTCAGttatatattcacatatttgtCTGTTATTTAGCTATAAAGGGTGGAAGGTTGTTTTTGCGCGAGCTTCGAATCAGCTAGTCAGtcttgttagctagttagctaacttagcagaacaggaaaaaaaaaaacaacaacacctCAATATAACAACGCGACTTAGAGGAAGTTTCTGTGCAGCTAATTGTGCATGCAGCTTTAATAAACCCAGGTTTCTCCGTTTGGCCGAATGTTTCATAACAGACAAAGACATCTCACTTTTGAAGTAAGATAACGTGGTCGGCTAAGCGTTCCCAGGTTTCACTCGCTCCATTCATCCGCTGCGAATTCAAAATGTCGGAGTTTGACGAATTTGAGAGACAACTGACCGAAAACAAACAAGGTGACGGCGTTAACGGCCATGAGCGGGACAAAGAGAATAGGCACAGGCGTCGGAGTGGCTCGCGTAGCCGTAGTCGTgaaaggaagaggaggagcaggGAGAGGAGGAGCAGGGAGCGACGCAGCAGCAGCAAAGATCGCAGGCATAGACGCAGTCGTTCCCCACcgagggagaagaagaagaaaatcaaaaaGTACTGGGATGTTCCTCCTCCAGGCTTTGAGCACATCACACCGATGCAGTACAAGGCCATGCAGGCTGCTGGGCAGATTCCTGCCACAGCACTGCTGCCCACTATGACTCCAGATGGACTGGCAGTTACACCTACACCAGTGCCTGTAGTAGGCAGCCAGATGACCCGCCAGGCTCGGAGGCTGTATGTGGGCAACATCCCCTTCGGCATCACAGAGGAATCGATGATGGACTTCTTCAACGCTCAAATGAGACTAGGGGGTCTTATTCAGGCTCCAGGAAACCCCGTCCTTGCTGTCCAGATTAACCAGGATAAGAACTTTGCCTTCCTTGAGTTGCGCTCAGTGGACGAGACCACACAGGCAATGGCGTTTGATGGCATCATATTCCAAGGCCAGAGTCTGAAGATCCGCCGGCCACACGATTACCAGCCGTTGCCAGGCATGAGCGAGAACCCCAGTGTGTATGTGCCAGgAGTGGTGTCCACTGTAGTCCCTGACTCTGCTCATAAGCTTTTTATTGGAGGCCTGCCCAACTATCTCAGTGACGACCAGgtaAAAGAGTTGTTGACGTCCTTTGGGCCTTTAAAAGCATTCAACCTAGTGAAGGACAGTGCCACAGGGCTCTCCAAAGGCTATGCCTTCTGCGAATATGTTGATGTCAATCTTAACGATCAGGCTATTGCAGGACTAAATGGGATGCAGTTAGGGGATAAGAAGCTCCTGGTCCAGAGAGCAAGTGTAGGAGCCAAGAACGCAACTCTGACAAGCATAAACGAGACCCCGGTGACGCTTCAGGTACCAGGCCTGATGAACAGCTCTGTGAATCAGATGGGTGGAATTCCCACTGAGGTTCTGTGCCTGATGAACATGGTGGCTCCAGAGGAACTTCTGGATGATGACGAGTACGAAGAGATTATGGAGGACGTCAGGGACGAGTGCTCCAAATATGGTCAGGTCAAGAGCATCGAGATCCCTCGCCCTGTCGACGGCCTGGAGATCCCTGGAACTGGAAAGATCTTCGTGGAGTTCACAACAGTTTTTGACTCCCAGAAAGCCATGCAAGCCTTGACGGGGAGGAAGTTTGCCAACAGAGTGGTTGTGACCAAATACTGCGACCCTGATGCCTACCACCGCCGAGATTTTGGCTAGATCAGAATGCATGGGAGCGGAGAGAAGGGGAGTGTGCGGCGCAGGAGAAACCAGATGAAAGGCTGTATTATGACCGAGGAGTGAATGGAGGGATGGCAAAAGGGGGATCTTTTCTTGTAGTTCAAGGTGGCATTtcatgttcagtttttttttttttttttttttttttaaaagcagaaatAGCTTTGGCGCAATGagtttgcattttaataaagcGGGGATTATTGAGTTTATTAATTTGTCTAATTGCATATTGAACAAAATTGTTTAGAAGAgtgggtggggtgggggggagGAATTACAGTACATAATGCTCTAAAAGGACAGAATGTTGTCAATGGCATGAGTGAAGGAAATAAATTGCTTCCTTTCACTTTACTTTGATCCCTCTATTGTCATACAATTTTGCTGTTGGTGACCTAACCACCTTGATGCTACTACACTCTCaatttttcagtctttttatCTCCGAAATTAGTTTAGTTCAACTGTGTGTTAGTTTCTATCCAGCTCTGTCTGTCCTGTTCCCAGTACACGACTGCCTCTTATATTGGTAATGTAACTTCAAGTCTAGCATGGCACCTTTGTGTCTCTCTATGTGTGAACATAACCCTCTTTTGATAATAAACTTAGTGAGAATTTGAAAAAGTTGATCAGTGGACTGCATTCTTCTTGGTTGattacagtaaatacagtaatTTACATGTTATATTAAAAGAAGAAATGTCTTTTAGCTATTCACTTGAAAGATAAGAGCTCCAAATTCAAACTTTTCCCCTAAAACTGCAGTATATGATAGCTGTAATGGATTTGTTCTGTATCTCATATTTTTGTTCAAAAATACTTTTCATACTATTGTAATGAAGTGATGTCCAGACATTGCTTATTTGAAAccagacagagaaaaatatgGATTCTGACCTGACAGTCTtagtataatgaaataaataatagactTGCTTGATTTCCACTTTTACTTTATGTAAGTAGTTTAATGTACGTTTTAAGCACACTGTAGTATATGCTTTAACAATACTGTGTAAATAAAGATCTCACAGATTTCA

Function

symbol description
u2af2b Predicted to enable poly-pyrimidine tract binding activity and pre-mRNA 3'-splice site binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2-type prespliceosome; U2AF complex; and commitment complex. Predicted to be active in nuclear speck. Orthologous to human U2AF2 (U2 small nuclear RNA auxiliary factor 2).
u2af2 Enables enzyme binding activity and pre-mRNA 3'-splice site binding activity. Involved in mRNA splicing, via spliceosome; negative regulation of protein ubiquitination; and regulation of RNA splicing. Located in nuclear speck. Part of U2-type prespliceosome and U2AF complex. Colocalizes with Prp19 complex.

NR:

description
PREDICTED: splicing factor U2AF 65 kDa subunit isoform X1

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0046660 female sex differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12837 U2AF2; splicing factor U2AF 65 kDa subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928271.2 False 2984 mRNA 0.45 11 12399540 12414780
XM_026928272.2 False 2970 mRNA 0.44 11 12399540 12414778
XM_034301648.1 False 2701 mRNA 0.46 13 12399540 12414792
XM_034301649.1 True 2990 mRNA 0.45 12 12399540 12414777

Neighbor

gene id symbol gene type direction distance location
cnot3b LOC108272956,LOC108439899,LOC107656608,LOC107739521,LOC107599539,LOC102215018 coding downstream 8178 12355242 ~ 12391362 (-)
shisa7b LOC108272955,LOC108439898 coding downstream 50968 12329158 ~ 12348572 (-)
znf865 znf865,LOC108272906,LOC108439897,LOC107724093,LOC107589382,LOC107599536,LOC107656606,LOC105902018 coding downstream 81649 12308795 ~ 12317891 (-)
dbpa LOC108272905,LOC101068247 coding downstream 92483 12291742 ~ 12307057 (-)
cacng8a LOC108272562,LOC107724111,LOC107589386,LOC107739619,LOC107693368,LOC108439892,LOC107656603,LOC107599529,LOC103022608 coding downstream 279670 12107898 ~ 12119870 (-)
ccdc106b cc106,LOC108273335 coding upstream 5711 12420503 ~ 12427389 (-)
si:ch211-232m10.6 LOC108272566,LOC108439912,LOC101076817 coding upstream 20180 12434972 ~ 12440347 (-)
zgc:194578 LOC108273361 coding upstream 32946 12447738 ~ 12462356 (-)
styk1a LOC108273367 coding upstream 50945 12465737 ~ 12482142 (-)
si:ch211-288g17.3 LOC108273223 coding upstream 222058 12636850 ~ 12649319 (-)
G404421 NA non-coding downstream 124038 12275268 ~ 12275502 (-)
G404282 NA non-coding downstream 273700 12125457 ~ 12125840 (-)
G404243 NA non-coding downstream 399030 12000266 ~ 12000510 (-)
G404241 NA non-coding downstream 402070 11997070 ~ 11997470 (-)
G404235 NA non-coding downstream 428576 11970742 ~ 11970964 (-)
G404667 NA non-coding upstream 99679 12514471 ~ 12515210 (-)
G404681 NA non-coding upstream 160288 12575080 ~ 12577284 (-)
G404682 NA non-coding upstream 161740 12576532 ~ 12578806 (-)
G404687 NA non-coding upstream 174480 12589272 ~ 12591533 (-)
G404692 NA non-coding upstream 186840 12601632 ~ 12635213 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other downstream 143168 12145598 ~ 12256372 (-)
si:ch73-347e22.4 NA other downstream 609361 11777369 ~ 11790179 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 2983287 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 3115047 9227395 ~ 9284493 (-)
G402673 NA other downstream 3238070 9143870 ~ 9161470 (-)
G404644 NA other upstream 16203 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 100524 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 155672 12570464 ~ 12570536 (-)
trnav-cac_23 NA other upstream 156801 12571593 ~ 12571666 (-)
trnav-cac_24 NA other upstream 158807 12573599 ~ 12573671 (-)

Expression


Co-expression Network