pygo2 (LOC108273220,LOC108433763,LOC103036475,LOC107693316,LOC107729895)


Basic Information

Item Value
gene id pygo2
gene name LOC108273220,LOC108433763,LOC103036475,LOC107693316,LOC107729895
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13729127 ~ 13734761 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928285.2
TGTAAGCGTCTCGCCCGGCTGTCCCTCTTTGTCCGGCAGCGACTGTAGGCCGTAATAGTCATGGCCAATTTCGCGTTTGAGGATAAATTTTAATTGTTCCCAGATGAAAAGcccagagaaaaagaagaggaagtcTAGCACTCAGGGGGCAAGTTTCTCCCACCTCTCTGAGTTTGCGCCTCCTCCAACCCCTATGGTAGACCATCTTGTGGCCTCAAACCCATTTGATGATGACTTTGGCCCGCCGTCACGTCCCGCTGGAGCCGGGGGTCCGGGAAGCGCACCTTTTCTGCCAAGCCCAGGGGCTGGTGGCGGAGGTGGAGGATATGGAGGACCAGGTAGAATGGGAGGGGGCATGGCCTACATGGGTGGCCCTGGAGGACCAGGTGGTGGACAGCCTGGACGAAGACCCCCTTTCGGACCTCCACCACCCAACACAGGACCACATCACCCAATTGGATTTGGAGGAATGCCTGGATttggaggtggtggaggaggtggtggtggtggaggtggtttTCCTCCAGGGGGACCATCACAATTTAACATGCCACCTAATTTCAGCCCTCCTATGCACCCAGGGCAAGGTTTTAACCCTATACTGTCACCTGGTGGAATGGGTGGTGGTCCTGGAGGTGGTGGTCCTCCTCATCCACGCTTTGGGATGCAGCAGCCTCAGCATGGACAGGGTGGTCATCCTTTCAACAGTCCTCCGATGCCTGGGGGCCCTCGTGGTCCTCCCCATGGCCCAATGAATCCGATGGGTGGCATGCCGACTGGAATGAATATGATGGGTGGTATGGGGGGTGGAATGGGTGGAGGTAATATGGTAGGTGGCCACGCAGGGTTGCCCCCCCAGGGATCGTTCCCTCCCTCGCAAGATGGCCCCTATCCTGGGCCAGGCACTCCTGGTAGTGAAGAAGGCAAAAACTTTGTTGGTGGACCAGGCGGTGGTCCACCAGGTCCACCTCAGCAGCCACCAAACCTCAACCCATCTGGCCCTCCGTCCAACAATGCCACCCCAGGTCCATCCCCAGCTTCTGGACCTCCACAGACTGGGGGAGGGTTTCCTGGTCACCCTGATGTTCAGCAATCAACACCCAACACACCTGGGCAACCTTCATCAGCACCTCCTCCACCCAATCCTAATTCCTCCCCTACTGGTCCACTAAACGGTCCACAACCCCAGCAAGTCCCACCAAATCAGCACACTCCAGTTAACTCCGCAAGTGGCCCTGCTCCCAACACTCCATCCAATCAGCAGCAGCCAACGCCACCCAACTCCAACCCAGGCTCTGCCCCATACAATCAGCAGAACAGTGCTCCTGGTGGTGGACCTATGGCAAGCCAGCCACCTAATACCAATCAAAACAATCTAAACAACACCGGTGGcagtaaccctaaccctccATCTAACTCAGCTTCCACACCTAACACGCAGTCTCCACTTCCCACTGGCCAAGCTCCACCTTCGGTTGGTCCAGGTTCTGGACCGCCAAAACTGGGAAGTGGCATGGTGTTCCATTGTGGCTTCTGCTTGTTAGAGGTACATGATGACCAGGAGGCCATTCTTTGTGAGGCATCATGCCAACGCTGGTTCCACAGAGACTGCACAGGCCTGACTGAGCCTGCATATGGCCTGTTAACCAGAGAGAGTGCTGCGGTATGGGCTTGCGATTTCTGCCTCAAGACCAAGGAGATTCAGGCAGTATATGTACGCCAGAGCCTGGGACAGCTGGTGGCTGCCAATGAAGGCTAAGCGACCAGGAACAGCAAGTAGGCTAAGGAAAGTGGACAGAGTAGGAAATGTAGGGAAACCAATGGATGGAACACGAATGGAAAATGTGGACTCTGTACTTCCTGTGTTGAGTGCTCTTGCAAACCACACAAGCACTTTTAAAGCTTACATTTCTTGATTGGGGGAAGTTTGAGCATGGTTTTTCAAGAACACTATGATAACCAGTAATGAATCATATTACCAGTACGATTTGGCTCGCATTTAAGGGaaagaaaatatttctgttattgCTTCAATTGAACACATGGTTGTAAAAGTGCAGAAGaatttttgtaatattgtcgtatttaaaagtaattaacTAATATCCAGTATAGATTCCAGTCAGAGTAAACTTTCCCTCCAAAAGCAGCTTGTCTACCAGCAAAGCACTGACAACAACTCACTACCTCACAGATTTAACAGTTGTACACATGCTTTGGCACAGATTGACTGCTATCTAAAGCTAGAGTGAGGTCTCCCTACACCACCTCCTCTAGTCCATGGTTTCCATTTCAGTGTGTCCAAAGGAAACAAGTACCTTTCTTCACCTTTGAGAGAAATGGTGTATACACATGTATATAATGAATATTAGTCACAATTTTTCTGTTCCTTTTGGGAAGAGTTGTCCTGTAAACAGAAAGATCCCTGACATTTAATCATGCTGTTGCCAAGTTTTTGTCTGAATATACATTCATtcaccatttttatttaaaactgaacacTGAGAGGTCAGTGTGGATGGTTGGCTACATAGGCAGTAGTGCTACATAACCATATCAGATGTGTATAGTCTTTGGATTGCATGTGAACCAAATGCAGTAATTTGTCCACTGTTTGTAATGTATTGTTTCTTTCTAGGCCTCAGTGAGGGGTGTGAAGTAGACCAAATAACAGAATGAAATCAAATCAGCTCATGTTTCTGTTGCTGAAAAAGATGTTATTTTCTTGTTTCCACATTTCTGTCCAGGTTGCCTTTTTTTCTTAGCAATTATCCATTTTTGTACTGATGTCTAGTGTGCAGACTCTAGTGCCCTCTGTTGTCCAGAATTGTGCAGTAAAGTTTGAGGTGGGCAGAAGTAAGGTAATGTTGTGAAAGAAGTAAaggaaaatgtatttgtatttttacttgCCATTTTTTGTAGACTATTGTTGCATTAAATTTGGGTTTGACTACCCAGTAAACCAAGTCATGAA
>XM_034301670.1
ATCCAGTGTAAGCGTCTCGCCCGGCTGTCCCTCTTTGTCCGGCAGCGACTGTAGGCCGTAATAGTCATGGCCAATTTCGCGTTTGAGGATAAATTTTAATTCAGGAGAATCTCAGTCCTGAGTAAGGTTAGTCTGTTCACTGCGAAACAAAACCCCAGATGAAGGCAGATCCGCTACCTGCTCAGTACTCTGTGAGGGATTCTGCGATCTTAGCTGTCAGCCTGTAGTGCTGCGCTGCCGTTACTTGGACCTGAGGACACGTCcgtctgcttcttttttttatgtgtgaacGGTGACATGGCAGCGCGCCGCCGATCGTTTTAATGGCTGCCGAATCGGGGAGACTGCAGGCGGGACAAGGTCAAGGGAAGCGTGGCAAAGGTTCCCAGATGAAAAGcccagagaaaaagaagaggaagtcTAGCACTCAGGGGGCAAGTTTCTCCCACCTCTCTGAGTTTGCGCCTCCTCCAACCCCTATGGTAGACCATCTTGTGGCCTCAAACCCATTTGATGATGACTTTGGCCCGCCGTCACGTCCCGCTGGAGCCGGGGGTCCGGGAAGCGCACCTTTTCTGCCAAGCCCAGGGGCTGGTGGCGGAGGTGGAGGATATGGAGGACCAGGTAGAATGGGAGGGGGCATGGCCTACATGGGTGGCCCTGGAGGACCAGGTGGTGGACAGCCTGGACGAAGACCCCCTTTCGGACCTCCACCACCCAACACAGGACCACATCACCCAATTGGATTTGGAGGAATGCCTGGATttggaggtggtggaggaggtggtggtggtggaggtggtttTCCTCCAGGGGGACCATCACAATTTAACATGCCACCTAATTTCAGCCCTCCTATGCACCCAGGGCAAGGTTTTAACCCTATACTGTCACCTGGTGGAATGGGTGGTGGTCCTGGAGGTGGTGGTCCTCCTCATCCACGCTTTGGGATGCAGCAGCCTCAGCATGGACAGGGTGGTCATCCTTTCAACAGTCCTCCGATGCCTGGGGGCCCTCGTGGTCCTCCCCATGGCCCAATGAATCCGATGGGTGGCATGCCGACTGGAATGAATATGATGGGTGGTATGGGGGGTGGAATGGGTGGAGGTAATATGGTAGGTGGCCACGCAGGGTTGCCCCCCCAGGGATCGTTCCCTCCCTCGCAAGATGGCCCCTATCCTGGGCCAGGCACTCCTGGTAGTGAAGAAGGCAAAAACTTTGTTGGTGGACCAGGCGGTGGTCCACCAGGTCCACCTCAGCAGCCACCAAACCTCAACCCATCTGGCCCTCCGTCCAACAATGCCACCCCAGGTCCATCCCCAGCTTCTGGACCTCCACAGACTGGGGGAGGGTTTCCTGGTCACCCTGATGTTCAGCAATCAACACCCAACACACCTGGGCAACCTTCATCAGCACCTCCTCCACCCAATCCTAATTCCTCCCCTACTGGTCCACTAAACGGTCCACAACCCCAGCAAGTCCCACCAAATCAGCACACTCCAGTTAACTCCGCAAGTGGCCCTGCTCCCAACACTCCATCCAATCAGCAGCAGCCAACGCCACCCAACTCCAACCCAGGCTCTGCCCCATACAATCAGCAGAACAGTGCTCCTGGTGGTGGACCTATGGCAAGCCAGCCACCTAATACCAATCAAAACAATCTAAACAACACCGGTGGcagtaaccctaaccctccATCTAACTCAGCTTCCACACCTAACACGCAGTCTCCACTTCCCACTGGCCAAGCTCCACCTTCGGTTGGTCCAGGTTCTGGACCGCCAAAACTGGGAAGTGGCATGGTGTTCCATTGTGGCTTCTGCTTGTTAGAGGTACATGATGACCAGGAGGCCATTCTTTGTGAGGCATCATGCCAACGCTGGTTCCACAGAGACTGCACAGGCCTGACTGAGCCTGCATATGGCCTGTTAACCAGAGAGAGTGCTGCGGTATGGGCTTGCGATTTCTGCCTCAAGACCAAGGAGATTCAGGCAGTATATGTACGCCAGAGCCTGGGACAGCTGGTGGCTGCCAATGAAGGCTAAGCGACCAGGAACAGCAAGTAGGCTAAGGAAAGTGGACAGAGTAGGAAATGTAGGGAAACCAATGGATGGAACACGAATGGAAAATGTGGACTCTGTACTTCCTGTGTTGAGTGCTCTTGCAAACCACACAAGCACTTTTAAAGCTTACATTTCTTGATTGGGGGAAGTTTGAGCATGGTTTTTCAAGAACACTATGATAACCAGTAATGAATCATATTACCAGTACGATTTGGCTCGCATTTAAGGGaaagaaaatatttctgttattgCTTCAATTGAACACATGGTTGTAAAAGTGCAGAAGaatttttgtaatattgtcgtatttaaaagtaattaacTAATATCCAGTATAGATTCCAGTCAGAGTAAACTTTCCCTCCAAAAGCAGCTTGTCTACCAGCAAAGCACTGACAACAACTCACTACCTCACAGATTTAACAGTTGTACACATGCTTTGGCACAGATTGACTGCTATCTAAAGCTAGAGTGAGGTCTCCCTACACCACCTCCTCTAGTCCATGGTTTCCATTTCAGTGTGTCCAAAGGAAACAAGTACCTTTCTTCACCTTTGAGAGAAATGGTGTATACACATGTATATAATGAATATTAGTCACAATTTTTCTGTTCCTTTTGGGAAGAGTTGTCCTGTAAACAGAAAGATCCCTGACATTTAATCATGCTGTTGCCAAGTTTTTGTCTGAATATACATTCATtcaccatttttatttaaaactgaacacTGAGAGGTCAGTGTGGATGGTTGGCTACATAGGCAGTAGTGCTACATAACCATATCAGATGTGTATAGTCTTTGGATTGCATGTGAACCAAATGCAGTAATTTGTCCACTGTTTGTAATGTATTGTTTCTTTCTAGGCCTCAGTGAGGGGTGTGAAGTAGACCAAATAACAGAATGAAATCAAATCAGCTCATGTTTCTGTTGCTGAAAAAGATGTTATTTTCTTGTTTCCACATTTCTGTCCAGGTTGCCTTTTTTTCTTAGCAATTATCCATTTTTGTACTGATGTCTAGTGTGCAGACTCTAGTGCCCTCTGTTGTCCAGAATTGTGCAGTAAAGTTTGAGGTGGGCAGAAGTAAGGTAATGTTGTGAAAGAAGTAAaggaaaatgtatttgtatttttacttgCCATTTTTTGTAGACTATTGTTGCATTAAATTTGGGTTTGACTACCCAGTAAACCAAGTCATGAA

Function

NR:

description
PREDICTED: pygopus homolog 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928285.2 False 2974 mRNA 0.49 3 13729127 13734755
XM_034301670.1 True 3260 mRNA 0.49 4 13729127 13734761

Neighbor

gene id symbol gene type direction distance location
cgnb LOC108272895 coding downstream 2972 13689122 ~ 13726155 (-)
tuft1b LOC108272645 coding downstream 50836 13646267 ~ 13678291 (-)
ubap2l ubap2l,LOC107599491 coding downstream 91002 13603327 ~ 13638125 (-)
hax1 hax1 coding downstream 129507 13591039 ~ 13599620 (-)
aqp10b LOC108272648,LOC108433769,LOC107599561 coding downstream 142577 13575684 ~ 13586550 (-)
s100s s100s,LOC108272970,LOC108433762,LOC103039105,LOC107716593,LOC107670010,LOC107559723 coding upstream 12117 13746878 ~ 13750502 (-)
s100u LOC108272971,LOC108433761 coding upstream 18052 13752813 ~ 13758428 (-)
pbxip1a LOC108273227 coding upstream 26894 13761655 ~ 13771533 (-)
LOC113535216 LOC108272677,LOC108433755,LOC107727734,LOC103040142,LOC107754022,LOC107549876,LOC107563022,LOC107666341,LOC107665170 coding upstream 48201 13782962 ~ 13804588 (-)
oxnad1 oxnad1 coding upstream 191074 13925835 ~ 14000665 (-)
G405368 NA non-coding downstream 22585 13655405 ~ 13706542 (-)
G405353 NA non-coding downstream 123235 13601027 ~ 13605892 (-)
LOC113535067 NA non-coding downstream 165178 13559889 ~ 13563949 (-)
G405206 LOC108273195,LOC108437913,LOC103394518,LOC103356295 non-coding downstream 274330 13452399 ~ 13454797 (-)
G405144 NA non-coding downstream 362351 13366437 ~ 13366776 (-)
G405386 NA non-coding upstream 775 13735536 ~ 13735748 (-)
G405419 NA non-coding upstream 73722 13808483 ~ 13814892 (-)
G405420 NA non-coding upstream 81137 13815898 ~ 13872428 (-)
G405575 NA non-coding upstream 341681 14076442 ~ 14077150 (-)
LOC117596429 NA non-coding upstream 448725 14183486 ~ 14191755 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 170496 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 184622 13542003 ~ 13544505 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other downstream 336294 13389916 ~ 13392833 (-)
G404999 NA other downstream 588012 13140694 ~ 13141115 (-)
trnav-cac_26 NA other downstream 1149476 12579580 ~ 12579651 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 25000 13759761 ~ 13761557 (-)
npy npy other upstream 346611 14081372 ~ 14083846 (-)
G405588 NA other upstream 379858 14114619 ~ 14119658 (-)
tpbga LOC108272337 other upstream 740715 14475476 ~ 14479077 (-)
G405961 NA other upstream 1232715 14967476 ~ 15013988 (-)

Expression


Co-expression Network