tomm40l (tomm40,LOC108272662,LOC108444390,LOC105028272,LOC106588243,LOC105902030)


Basic Information

Item Value
gene id tomm40l
gene name tomm40,LOC108272662,LOC108444390,LOC105028272,LOC106588243,LOC105902030
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11832206 ~ 11842945 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928288.2
CTCTGAGGTTCCTcctgtccaatcacagagcgCGATGTCCAAAGTAGGCGGAGCCCAGTCGGCACGCGCTGCGGTTTACTTCCGGGTGAGAACTCGTCCTCTGGCTGAAGTGCAACCATGGGTAATGTGTTGGCTGCCAGTTCTCCCAGTCCACCTCCACCAGTGCAAGCTGGGCCGGGGTTGGTTTCTGTGCCTGCTGGCTTCACCATGCCGGCCATCTCCCCGGTCTCACCTGCTTCCTCTGGGCAACAGGAGAGCGAGCCTGCGCTACCCAACCCAGGTGCTTTTGAGGAGTTCCATCGAAAATGCAAAGAGGTGTTCCCCACGCAGATGGAAGGAGTTCGGCTAACAGTCAACAAGGGCCTCAGCAGCTTTTTCCAGGTCAATCACACTATCATGCTAAGCACCATGGGAGATTCCAGTTATAGATTTGGTGCTACATATGTGGGGACCAAGCAGACAGGACCTGCAGAGGCATTTCCAGTTATGGTGGGTGACATAGACAACACTGGCAGCCTCAATGCACAGATTATTCACCAAATAAGCAACAGAGTGCGCTCGAAACTAGCCTTCCAGACGCAGCAGCAAAAGTTTGTCAACTGGCAAGGAGATGCTGAGTTTAAAGGAGACGACTTCACAGCTACAGTAACTGTAGGAAACCCAGACATGGTGGTAGGATCAGGCATTGTTGTAGCTCACTATCTCCAGTCGATCACTCCGTCCTTGGCACTGGGAGGAGAGCTCGTATACCATCGCCGACCTGGTGAAGAGGGAACAGTAATGTCTTTGGCAGGAAGATATACAGGTTCTAATTTTATTGCCACACTGACCCTAGGAGGTGCTGGTGCACATGCATCATATTATCACAAAGCCAACGAGCAGCTGCAGATTGGTGTGGAGTTTGAAGCCAGCACTCGTATGCAGGAAACAAATGTATTGTTTGGTTACCAGCTGGACATCCCCAAGGCCAATCTGCTCTTTAAAGGTTCTATAGACAGTAACTGGGTAGTAGGAgcaacactggaaaaaaagcTGCTGCCTCTTCCCCTGTCTTTGGCACTTTGTTCTTTCCTAAACCATCGTAAAAACAAGTTCCAGTGTGGGTTTGGTGTGACCATTGGTTGAGCAACCTGTTCAGAGTTTAAGTGAACAGGGGCTGACATTCACACATTGATGTTTTAGGGATCAGCAACATGTGGACACTCACACAAAGTGCACCAtcaatttatcatttttttttttatatgaatgtgtCTCAGtcactgtttatatataaagaagTATCCAGAAAGTAACtgcagtatatattatatatagcaGATATTCAACCATATTCCCTCAATGTCCATTTCATAAAGCATCttgcaaaaaaaagtaaatcagcTGATTCCTGAATGAAGAAATGTTGAGTGAAAAGTCTGAAAGGACAAACAGCGaaataatactttattttaGGTATTTGAAGAGTGATTGTAatcttgtttgttgtttttgttaagtctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgcgtgtgtgtattgtgg
>XM_034301426.1
AGATCACGTGACTTGCTCACATGGGTAATGTGTTGGCTGCCAGTTCTCCCAGTCCACCTCCACCAGTGCAAGCTGGGCCGGGGTTGGTTTCTGTGCCTGCTGGCTTCACCATGCCGGCCATCTCCCCGGTCTCACCTGCTTCCTCTGGGCAACAGGAGAGCGAGCCTGCGCTACCCAACCCAGGTGCTTTTGAGGAGTTCCATCGAAAATGCAAAGAGGTGTTCCCCACGCAGATGGAAGGAGTTCGGCTAACAGTCAACAAGGGCCTCAGCAGCTTTTTCCAGGTCAATCACACTATCATGCTAAGCACCATGGGAGATTCCAGTTATAGATTTGGTGCTACATATGTGGGGACCAAGCAGACAGGACCTGCAGAGGCATTTCCAGTTATGGTGGGTGACATAGACAACACTGGCAGCCTCAATGCACAGATTATTCACCAAATAAGCAACAGAGTGCGCTCGAAACTAGCCTTCCAGACGCAGCAGCAAAAGTTTGTCAACTGGCAAGGAGATGCTGAGTTTAAAGGAGACGACTTCACAGCTACAGTAACTGTAGGAAACCCAGACATGGTGGTAGGATCAGGCATTGTTGTAGCTCACTATCTCCAGTCGATCACTCCGTCCTTGGCACTGGGAGGAGAGCTCGTATACCATCGCCGACCTGGTGAAGAGGGAACAGTAATGTCTTTGGCAGGAAGATATACAGGTTCTAATTTTATTGCCACACTGACCCTAGGAGGTGCTGGTGCACATGCATCATATTATCACAAAGCCAACGAGCAGCTGCAGATTGGTGTGGAGTTTGAAGCCAGCACTCGTATGCAGGAAACAAATGTATTGTTTGGTTACCAGCTGGACATCCCCAAGGCCAATCTGCTCTTTAAAGGTTCTATAGACAGTAACTGGGTAGTAGGAgcaacactggaaaaaaagcTGCTGCCTCTTCCCCTGTCTTTGGCACTTTGTTCTTTCCTAAACCATCGTAAAAACAAGTTCCAGTGTGGGTTTGGTGTGACCATTGGTTGAGCAACCTGTTCAGAGTTTAAGTGAACAGGGGCTGACATTCACACATTGATGTTTTAGGGATCAGCAACATGTGGACACTCACACAAAGTGCACCAtcaatttatcatttttttttttatatgaatgtgtCTCAGtcactgtttatatataaagaagTATCCAGAAAGTAACtgcagtatatattatatatagcaGATATTCAACCATATTCCCTCAATGTCCATTTCATAAAGCATCttgcaaaaaaaagtaaatcagcTGATTCCTGAATGAAGAAATGTTGAGTGAAAAGTCTGAAAGGACAAACAGCGaaataatactttattttaGGTATTTGAAGAGTGATTGTAatcttgtttgttgtttttgttaagtctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgcgtgtgtgtattgtgg

Function

symbol description
tomm40 Predicted to enable protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to act upstream of or within protein transport and transmembrane transport. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Human ortholog(s) of this gene implicated in cerebral infarction. Orthologous to human TOMM40 (translocase of outer mitochondrial membrane 40).

NR:

description
mitochondrial import receptor subunit TOM40 homolog

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K11518 TOM40; mitochondrial import receptor subunit TOM40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928288.2 True 1567 mRNA 0.46 10 11832206 11842945
XM_034301426.1 False 1470 mRNA 0.45 10 11832206 11842609

Neighbor

gene id symbol gene type direction distance location
trnay-gua_21 NA coding downstream 8243 11823876 ~ 11823963 (-)
trnay-gua_20 NA coding downstream 9742 11822377 ~ 11822464 (-)
trnay-gua_19 NA coding downstream 11242 11820877 ~ 11820964 (-)
trnay-gua_18 NA coding downstream 12735 11819384 ~ 11819471 (-)
trnay-gua_17 NA coding downstream 14232 11817887 ~ 11817974 (-)
LOC113535038 LOC108272660,LOC108444404,LOC103037120,LOC100707815,LOC101472794,LOC103393952,LOC106588242,LOC103360126 coding upstream 1608 11844553 ~ 11863767 (-)
lipea LOC108272659,LOC108444403 coding upstream 24687 11867632 ~ 11882509 (-)
ago3b ago3b,LOC108272767,LOC103367052,LOC107379323,LOC108413244,LOC106605151,LOC100706402,LOC108444400,LOC103034630,LOC567622,LOC106582842 coding upstream 68726 11911671 ~ 11938421 (-)
usf2 usf2,LOC108273297,LOC107739527,LOC107656615,LOC107724110,LOC107693382 coding upstream 140249 11983194 ~ 11995992 (-)
LOC113535156 LOC108272362 coding upstream 158071 12001016 ~ 12004480 (-)
G404198 NA non-coding downstream 10780 11821050 ~ 11821426 (-)
G404060 NA non-coding downstream 66439 11763111 ~ 11765767 (-)
G403981 tpm3,LOC100305075,LOC107748711,LOC107693397,LOC108440886 non-coding downstream 136015 11668763 ~ 11696191 (-)
G403982 NA non-coding downstream 151210 11679255 ~ 11680996 (-)
G403893 NA non-coding downstream 299190 11531293 ~ 11533016 (-)
G404235 NA non-coding upstream 127797 11970742 ~ 11970964 (-)
G404241 NA non-coding upstream 154125 11997070 ~ 11997470 (-)
G404243 NA non-coding upstream 157321 12000266 ~ 12000510 (-)
G404282 NA non-coding upstream 282512 12125457 ~ 12125840 (-)
G404421 NA non-coding upstream 432323 12275268 ~ 12275502 (-)
si:ch73-347e22.4 NA other downstream 42027 11777369 ~ 11790179 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 2415953 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 2547713 9227395 ~ 9284493 (-)
G402673 NA other downstream 2670736 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 3914513 7869403 ~ 7917693 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 302653 12145598 ~ 12256372 (-)
G404644 NA other upstream 588050 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 672371 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 727519 12570464 ~ 12570536 (-)
trnav-cac_23 NA other upstream 728648 12571593 ~ 12571666 (-)

Expression


Co-expression Network