dbpa (LOC108272905,LOC101068247)


Basic Information

Item Value
gene id dbpa
gene name LOC108272905,LOC101068247
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12291742 ~ 12307057 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928333.2
GAGAGGTGACGTCACGAGAGCTCGCCCGTGTTCGTTCCAGCTGACCGTAGCCGCGATTCCGGGCGCtcgtctgtctcactgactcCGGAGCAGGCGATGGGTGACAACCCCGAGTAAATAACACCAGGGAAGAGAGCGCGAGCGTGACACAAggggggagaaaaagaaaaaaaaaagaaaagaaaagaaaaagcaaacgGTGCAGCAGATGATTCCTGGAGGCTACTGCGCCTCTTCCATGACAGCTGGAGTAGTGGAGCTCTGAGGACGGCGGCTTGGCGGCGGCTGCGCGTCTCAACAGCGTCGCACCGCTGGATCTAATGGACGCCTGTCGCTCGCAGCTCACTGGCTTTCTCGGGGAATATTTTCATCCGGGCCCGAAGCTCAAACTGGTGCCAAATGTCAGCAAATAAGCGGACTGAGCTCCTGCGAACACGTCAAGAGTGCCAGCTTCAATTCCCTGCCTGCAACTTTTGCTGAAAGCAGAGACAGAAGCGTCCTGGGCGCCAGGTTTAAACATTTCAACGCAGTGATAGTGAACAGGAAGATGGAGCACAGTGCTGCTGAGTAGAGATCCTATGCGtgtgcagatttattttaattattattattattttttagtttaaaaatggATTGAGTGGAAAGCACTTTGGGAAAGCCTTCTGGATGCTGGATGGTTTGAGGTTTGAGGTGTAAACCCTCTCCTATCCTCTTATCATCAATGGTCAGCTGAGGGCTTTATCCGGAAGCAGCTCCTATCTCTCACTCACtataggttttttttggtttttgtttcgAGTTGATTGTGATTTAAAAGTGGACCCTAAGCCAAGTATAGTCAGGCTATGTCCAGGCCTCTTTCTCAGCTTTTACCTCCTCCAGATCTTCCCTCTGGAGGTAGTGCACAGTTTGGCCCTACTGCTACTACAGCACCCAATGGCCACCTGGGCTCCGTGGCCAGCCTAAAATCTCTTCTTCAGCTTCCCATTAAAGGAGACAGCAGAGGGAAAGACTGCTGTGAGATGATcgATCAAGACAAACCGTTGGACTCTGATGAGGATTCACTTGGTGGAATTGGCACCGGGGCCAGTGGCTCTATGCGCACCTCTTCCCAGACGGCTTTCCTGGGGCCATTGCTGTGGGAACGCACGCTACCATGTGACGGCGGCTTATTCCAGCGGCAGTTCATGGACTTGGAGGAGTTCCTGACGGAGAACGGCATGGGGTGCATGCCACTGGGCAGTACCTCTGGTGCTCAGGCCCTCATTCCATCGCAGAGCATGCAGTCAGCCCTTCCAAGCCAGAGCTCCTCACCGTCTCCCGGCTCCTCCTCAGCCTCCTCCATCTCTTCCCTCTCATCTTCGTCATCCTCGTCCTCCCTTCTGGGACTAGACGTGCCACAGGTCCAAACCCAAGGAATGCTGGCAAGTCCTGAGTGTCTGCACGGTGGACAGGCCGTGCAGCAGGACCCGTCTCCCAGCTCCTCCTGCCCTCCTCCACCAGTGCCCAGCACTGGTGCCCCTGCGGCTGATGTCATGGTCAACTTTGACCCCGACCCTGCCGACCTGGCCTTGTCCAGCGTACCGGGCCAGGAAGCGTTCGATCCACGGCGACATTGCTTTTCTGAGGAGGATCTCAAGCCTCAGCCTATGATCAAGAAGGCTCGCAAAATGTTGGTGCCTGACGAGCAGAAGGATGAAAAGTACTGGAGCCGACGTGTAAAGAACAACGAGGCGGCGAAGCGCTCACGTGACGCACGACGCCTCAAGGAGAACCAGATATCCGTCCGTGCCGCTTTCCTCGAGCGAGAGAATGCTGCACTCCGACAGGAAGTGGCTGATATGCGCAAAGAGCTTGGCCGCTGTCgcaacatcatcaacaaatatGAGAATCGCCACGGAGACTTATGAAGAGGAGAATTTGAAAAAAGCAGTTTGGTCTCTTTGGAAAAGGCAGTTTAAGGGCAGGGCTGTCAAACCACACTCAGAAATTTCAGCAGACGGTTTTCTAAACAAGCACTACAACACTTGCGAATCATGTTTCTTTAAACGTGTGGCATTGTGCATGGCTGCAACAAATAGTTGCTTACAGATCAGTAATCCTAGTCAAAGGGAATGCTCACAAAGTCTATAAGAAACACTGTTCACTTTCATATTATTCTTTTTGGCTGTAATACTACGCTAAACCCTAACTTTTGCCATTTTAAGCTAGTGTAAATTTTTAGGGGAAGTTGTCGACTCGATATTCAGTGTTGCTCAGACTTTATGAACATTTCTTACTCTTGTTATTTTTCTTAGAAGATTATGCAGATGACACTGGTAATATTTTCTATGACAAAAAAAGACCTTGTATATTTTTGACATGGCTTTGGACAGTTACAATAACACAGAATAGAAGAAAACGGAGCGGAGGATAAGACAGCACAAAGATTTAGGCAGgaaaattgtatatttttatacctACAGGTGCAGACAGGCAAAGAGATTTTGGAActaattttttcctctatattttatacatatggGTGGGTAGGGGCACTTATGAAGAAAGAGGGCTATATGAAGATGTTTTTGAAATCAGGTTGCTTACTGTGGCTGATCGAGAAGGTCTGAAAGTGAAATTAAACTACCATGATGGACAGAACTATCAGAGCAATGATGGCCAGCTGTGCTACAATGAACAGCTGAAGTTGAAGTAAACAGCAAAATAAGTGTTTTGAAATTATGTTATGGATTTGTTACAGTACCTAATTTTATATGTTGGATTCCTTTTCTTcaatttctgtgtgttttgtcctGAGTTGAAAGCAAACAGATACAAGGAGAAAGCAGGAGGTCTGGACATTACACCCTGTCACTACATTAGAGGAATGGATGTACAAAAGATTTTCCATGTATATATTTGATTGTTGAAGCTTCtattccacataaacacacatacttaTACACAAACTGGACCTTGGATTGCATGTGCACAAACCAGATGTCTTTTAAGTCAACACACATAATCAGAGTTATTTCAGCACAGTTTTCCCTGCTCCTTcacactgtctctttctcacactccCTGAGTTTCtgatttttccaaaacattgattctggtttaaatttttgttgttgtttagttgCCAGTGAGTGGGTTGCATGGTagctcattttttttgtatattgtatGATCAGCACGGAAAAAAATACCCACATGTTGTCCTTTTGGTACAGATTCCTTGCACTAACTGTGTCTCTGTTTAAATTGTAAGAGCAATCTTAATCTATTAGAAGTGTTATGTAAATTCCCAAACTATATTCTAACAAAATGAATGCACCCTGATActactgtaaaaataatatccTATTATATAAAAGTTATAATGACCTATATGAGATTAAACTATTCTATCACTAGGTATGTCTGTAAATATCAgtatatgtgaatatgtgatTGTAgaggtaatttgcataaatgtaGTTATATACAGAAACCTATTGCTTCACAAAAAGTACCTACAGCCAGAAACCCAGAATCGAATCAATCAAACCAAAATGATGggataataataaaagaatatttttaaaaatacattattttaaagaagtgtttaaattttgtattttgtcctGGTGCaggtaaaataaattaataaaataataataaaatatacagaattcTATACAAGCCCAACTAATTTTGGGACAGTTGCTACAAAGCTACAGTACCCTCAAGAACTATTGGCATCCTTtaagaaaattagcaaaaaaaaaaaatcatatctaaAAAGTATAACATGCAATATGTGACATTTTGAGCTCACGTTGACATtgtaaagttgattttttttttaagacaaaacttttttttaagcagtgcatttttttttctacagaacaCTGATTTCAAAATGATCTGTACCCATACAATTGAAATTTTGTTAGGCCTGCCAGGACAATAACAGCACCGAGTCTCTTCCTGTAACATCTAATaaggttggagacacttgtagaggACTCTTTGTCCACatctccatgcagaacattttaagctcctttatGTTTGTAGGTTTGTACATATGGACTTCCCTCTTCAGTTTCAGTagggttcaaatccagagactgagatgATCGTGGCAAAACATTGCTTTAGTGTTTCTCTAACCATTTCTGTGTTAAAACCATTGCAAACTGTGAccttaaggctttttttttaaacgtctTTACCATCTTCCTCACTGTGTGGGGCAGACTGTGTGCTCAGTGGTTCAATTCCTGGCAAAATTTTCAACTTTTCGTGAAATATGTGAAACATTTTGTTATGGCACTAGCTgtgtttaatgatattttaattgttttgtgtAACAACCATCTGTCTCCTGTATTGAAaggtcttttttcccccatggtAATGGATGAAAaagggattttacatgtgtgcaacctcatatttatatccCAGGGAAACAGGCAGGTTTAAAACAGGTTCCAGGCAACAACAGAGTTCCTGtgcaaatgcaaaataatagaaGTTTTCAAGAATgtcaatttgtttgcatttatataaaatattcctCAATAATTTTGGCACATATATCTCtgagagaaaatactattatttaaaaataagtatgTCTAatgagaattatttttttcttagaacAAAGATAAATAGTTTCTCTGAGTCTGAGTGGaaaattattgtgtgtgatgtttattttatacaatcaattttgctaatttttatgaagggtgccaataattatggaggacactgtatatacagaagCTCTATGTTGATTTGCACATGacaatgtaaatgtgttttttttttttttttttaaaaattgttgttactcttattattattgctagTATTATCAATTTTGATAATATTCTCTATTCCTTTTCAGCATTTCTTGTGATGAGCTTTCTAACGAAACGCTCACCTTTGTAGTAATAACACCAATAACACCATCTTGGAAAACTCATATTGCCATTTGACTGTTCATAATTGGTGCCATCCACTAAGACTTGTCATTGTATGTGTGAGTTTATATAAgctgataaaaacaaacaagatttTTTCTCCTGGAAGAATTGAATCTGCTCCTTCTGCCAGCATTGACTTGGTGCTGCTTTTGCTCCCGCACATCAAAGGAGtatgatttttattacattgAAACTTTGTAGAAGCTTAAATTGAAACTTTTGGCAGTGCTATTTTTCTATATTACCCTGTACACATGTTAATGGAATTTCACAAGCACTGGTAGCTTATCCTCTTTTTCCAGTGACAAGTTTCTTACCAGTTGATATTGCGGGTATTGTATTCATCATATTTTGCCTCTTTCCATGTGGAATATTAACAGGTCCCTGGTTGTGACTGTTATTAACTACAAATACCAAGAGCATACCACTATCAAACCTAACAGAACCAATAATATCTACTGTTCTATGTGTGGAGATGCTGGGAAATGTGGTCTGGCTTTTTCCTGACACACCAATAAATGATTGCCATTATTCACCGATA

Function

NR:

description
PREDICTED: hepatic leukemia factor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928333.2 True 5517 mRNA 0.41 4 12291742 12307057

Neighbor

gene id symbol gene type direction distance location
cacng8a LOC108272562,LOC107724111,LOC107589386,LOC107739619,LOC107693368,LOC108439892,LOC107656603,LOC107599529,LOC103022608 coding downstream 171872 12107898 ~ 12119870 (-)
si:dkey-14o18.2 si:dkey-14o18.2,LOC108272430,LOC108439891,LOC107589391,LOC107693367,LOC107599522,LOC107724105 coding downstream 207579 12072924 ~ 12084163 (-)
slc2a3a slc2a3a,LOC108273342,LOC108439890,LOC107739512,LOC107693366,LOC107724104,LOC107665492,LOC107589470 coding downstream 232347 12028221 ~ 12059395 (-)
LOC113535156 LOC108272362 coding downstream 287262 12001016 ~ 12004480 (-)
usf2 usf2,LOC108273297,LOC107739527,LOC107656615,LOC107724110,LOC107693382 coding downstream 295750 11983194 ~ 11995992 (-)
znf865 znf865,LOC108272906,LOC108439897,LOC107724093,LOC107589382,LOC107599536,LOC107656606,LOC105902018 coding upstream 1738 12308795 ~ 12317891 (-)
shisa7b LOC108272955,LOC108439898 coding upstream 22101 12329158 ~ 12348572 (-)
cnot3b LOC108272956,LOC108439899,LOC107656608,LOC107739521,LOC107599539,LOC102215018 coding upstream 48185 12355242 ~ 12391362 (-)
u2af2b u2af2,u2af2b,LOC103026862,LOC107656609,LOC108439900 coding upstream 92483 12399540 ~ 12414792 (-)
ccdc106b cc106,LOC108273335 coding upstream 113446 12420503 ~ 12427389 (-)
G404421 NA non-coding downstream 16240 12275268 ~ 12275502 (-)
G404282 NA non-coding downstream 165902 12125457 ~ 12125840 (-)
G404243 NA non-coding downstream 291232 12000266 ~ 12000510 (-)
G404241 NA non-coding downstream 294272 11997070 ~ 11997470 (-)
G404235 NA non-coding downstream 320778 11970742 ~ 11970964 (-)
G404667 NA non-coding upstream 207414 12514471 ~ 12515210 (-)
G404681 NA non-coding upstream 268023 12575080 ~ 12577284 (-)
G404682 NA non-coding upstream 269475 12576532 ~ 12578806 (-)
G404687 NA non-coding upstream 282215 12589272 ~ 12591533 (-)
G404692 NA non-coding upstream 294575 12601632 ~ 12635213 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other downstream 35370 12145598 ~ 12256372 (-)
si:ch73-347e22.4 NA other downstream 501563 11777369 ~ 11790179 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 2875489 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 3007249 9227395 ~ 9284493 (-)
G402673 NA other downstream 3130272 9143870 ~ 9161470 (-)
G404644 NA other upstream 123938 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 208259 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 263407 12570464 ~ 12570536 (-)
trnav-cac_23 NA other upstream 264536 12571593 ~ 12571666 (-)
trnav-cac_24 NA other upstream 266542 12573599 ~ 12573671 (-)

Expression


Co-expression Network