si:ch211-232m10.6 (LOC108272566,LOC108439912,LOC101076817)


Basic Information

Item Value
gene id si:ch211-232m10.6
gene name LOC108272566,LOC108439912,LOC101076817
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12434972 ~ 12440347 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928355.2
ttcattcatacattcactATGCTGAAGCGCATGTCCAGACGCAGCCGCTCcctgctgtccctctgtctaACCTCTCTGGCCCTGACTCTCTCTGTACTGGCCTTCTGCACCTCCTACTGGTGTGAGGGGACACACAAAGTGGTAAAacctctctgcctgtctcctgTGAAAATGAAGAACTGTGGCCAGAACAACAGCCAGCCCTTTACCACTGACAGCCCAACTCCAGACCCCAAAAAGCCCGAGTCCAATGTGACAATTTCCCCAAAGCAGAAGGAGGAGCAAACCCTAATGAAGGCAAAGGAGCTGGCCAATGCAGTCCACTATATCTGGGAAACAGGAGAGGACAAATACATGCTTCGATACTTTCACACCGGTTTCTGGCTTTCTTGTGAGAAACACCATAACGGTCAAGGAGAGAAATGTCGAAGTTTCATTGAATTGACGCCTGGAGAAGCACAAGGGGTTCTTTGGCTCTCCTTGTTCTCAGAGTTCATGTACATCACTCTGCTGGCCATGGGATTCCTTATGATGTGGATGGAGTTGCTTTTACTTTGCTTAAATAAGGAGATGTATGCACTCAAGATCAATGCCTTTGCTGCCATTTGCACTGTTCTCTCAGGAATGATGGGGATGGTAGCACATATGATGTACACTACAGTATTTCAGTTGACTGTGAGCATTGGTCCTAAAGACTGGAGACCGCAGACCTGGGACTACGGCTGGTCATTCACTCTGGCCTGGATTTCTTTCAGCTGTTGCATGGCTGCTGCTGTCTTCACCCTCAACTCCTACACCAAGATGGTGATTGAGATGAAGCACCGCGCTCGTATTCGTCTGGAAGAAGCTGCCAATCACGCTCCCCCTTATGACGATATAATCATGGCCGATGCTAGTGGCAGCATCTACTCCATCAACCTTCCTCTTCAGCACTGTCAGGAGGGGAAGTTGATTGACACCATATGGCCTTCTAGGAAGGAGTGTCTGCCTGCAGTGATGATGGATGGAATGAACTCGGAGGGACTGGTGCTGTTAGGAAGGTGTGGGACGCAGGGGTGCGAAGACtgcgagagagagatagacaagATAAAGGATGTATTGGAGAAAGAAGGtgatgaagaggatgatgaCATATGCTGAGAGGACATGGATGGAAGGaagcacaaaagaaaaagagtagGAAGGGGTGGTGGAATAGGATGTGCATTGGAGCCCTGAAAGGCGA
>XM_026928356.2
ttcattcatacattcactATGCTGAAGCGCATGTCCAGACGCAGCCGCTCcctgctgtccctctgtctaACCTCTCTGGCCCTGACTCTCTCTGTACTGGCCTTCTGCACCTCCTACTGGTGTGAGGGGACACACAAAGTGGTAAAacctctctgcctgtctcctgTGAAAATGAAGAACTGTGGCCAGAACAACAGCCAGCCCTTTACCACTGACAGCCCAACTCCAGACCCCAAAAAGCCCGAGTCCAATGTGACAATTTCCCCAAAGCAGAAGGAGGAGCAAACCCTAATGAAGGCAAAGGAGCTGGCCAATGCAGTCCACTATATCTGGGAAACAGGAGAGGACAAATACATGCTTCGATACTTTCACACCGGTTTCTGGCTTTCTTGTGAGAAACACCATAACGGTCAAGGAGAGAAATGTCGAAGTTTCATTGAATTGACGCCTGGAGAAGCACAAGAGTTCATGTACATCACTCTGCTGGCCATGGGATTCCTTATGATGTGGATGGAGTTGCTTTTACTTTGCTTAAATAAGGAGATGTATGCACTCAAGATCAATGCCTTTGCTGCCATTTGCACTGTTCTCTCAGGAATGATGGGGATGGTAGCACATATGATGTACACTACAGTATTTCAGTTGACTGTGAGCATTGGTCCTAAAGACTGGAGACCGCAGACCTGGGACTACGGCTGGTCATTCACTCTGGCCTGGATTTCTTTCAGCTGTTGCATGGCTGCTGCTGTCTTCACCCTCAACTCCTACACCAAGATGGTGATTGAGATGAAGCACCGCGCTCGTATTCGTCTGGAAGAAGCTGCCAATCACGCTCCCCCTTATGACGATATAATCATGGCCGATGCTAGTGGCAGCATCTACTCCATCAACCTTCCTCTTCAGCACTGTCAGGAGGGGAAGTTGATTGACACCATATGGCCTTCTAGGAAGGAGTGTCTGCCTGCAGTGATGATGGATGGAATGAACTCGGAGGGACTGGTGCTGTTAGGAAGGTGTGGGACGCAGGGGTGCGAAGACtgcgagagagagatagacaagATAAAGGATGTATTGGAGAAAGAAGGtgatgaagaggatgatgaCATATGCTGAGAGGACATGGATGGAAGGaagcacaaaagaaaaagagtagGAAGGGGTGGTGGAATAGGATGTGCATTGGAGCCCTGAAAGGCGA
>XM_034301702.1
ttcattcatacattcactATGCTGAAGCGCATGTCCAGACGCAGCCGCTCcctgctgtccctctgtctaACCTCTCTGGCCCTGACTCTCTCTGTACTGGCCTTCTGCACCTCCTACTGGTGTGAGGGGACACACAAAGTGGTAAAacctctctgcctgtctcctgTGAAAATGAAGAACTGTGGCCAGAACAACAGCCAGCCCTTTACCACTGACAGCCCAACTCCAGACCCCAAAAAGCCCGAGTCCAATGTGACAATTTCCCCAAAGCAGAAGGAGGAGCAAACCCTAATGAAGGCAAAGGAGCTGGCCAATGCAGTCCACTATATCTGGGAAACAGGAGAGGACAAATACATGCTTCGATACTTTCACACCGGTTTCTGGCTTTCTTGTGAGAAACACCATAACGGTCAAGGGGTTCTTTGGCTCTCCTTGTTCTCAGAGTTCATGTACATCACTCTGCTGGCCATGGGATTCCTTATGATGTGGATGGAGTTGCTTTTACTTTGCTTAAATAAGGAGATGTATGCACTCAAGATCAATGCCTTTGCTGCCATTTGCACTGTTCTCTCAGGAATGATGGGGATGGTAGCACATATGATGTACACTACAGTATTTCAGTTGACTGTGAGCATTGGTCCTAAAGACTGGAGACCGCAGACCTGGGACTACGGCTGGTCATTCACTCTGGCCTGGATTTCTTTCAGCTGTTGCATGGCTGCTGCTGTCTTCACCCTCAACTCCTACACCAAGATGGTGATTGAGATGAAGCACCGCGCTCGTATTCGTCTGGAAGAAGCTGCCAATCACGCTCCCCCTTATGACGATATAATCATGGCCGATGCTAGTGGCAGCATCTACTCCATCAACCTTCCTCTTCAGCACTGTCAGGAGGGGAAGTTGATTGACACCATATGGCCTTCTAGGAAGGAGTGTCTGCCTGCAGTGATGATGGATGGAATGAACTCGGAGGGACTGGTGCTGTTAGGAAGGTGTGGGACGCAGGGGTGCGAAGACtgcgagagagagatagacaagATAAAGGATGTATTGGAGAAAGAAGGtgatgaagaggatgatgaCATATGCTGAGAGGACATGGATGGAAGGaagcacaaaagaaaaagagtagGAAGGGGTGGTGGAATAGGATGTGCATTGGAGCCCTGAAAGGCGA

Function

NR:

description
PREDICTED: germ cell-specific gene 1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928355.2 True 1225 mRNA 0.49 6 12434972 12440347
XM_026928356.2 False 1198 mRNA 0.49 6 12434972 12440347
XM_034301702.1 False 1177 mRNA 0.49 5 12434972 12440347

Neighbor

gene id symbol gene type direction distance location
ccdc106b cc106,LOC108273335 coding downstream 7583 12420503 ~ 12427389 (-)
u2af2b u2af2,u2af2b,LOC103026862,LOC107656609,LOC108439900 coding downstream 20180 12399540 ~ 12414792 (-)
cnot3b LOC108272956,LOC108439899,LOC107656608,LOC107739521,LOC107599539,LOC102215018 coding downstream 43610 12355242 ~ 12391362 (-)
shisa7b LOC108272955,LOC108439898 coding downstream 86400 12329158 ~ 12348572 (-)
znf865 znf865,LOC108272906,LOC108439897,LOC107724093,LOC107589382,LOC107599536,LOC107656606,LOC105902018 coding downstream 117081 12308795 ~ 12317891 (-)
zgc:194578 LOC108273361 coding upstream 7391 12447738 ~ 12462356 (-)
styk1a LOC108273367 coding upstream 25390 12465737 ~ 12482142 (-)
si:ch211-288g17.3 LOC108273223 coding upstream 196503 12636850 ~ 12649319 (-)
kmt2ba LOC108272954,LOC107701550 coding upstream 247415 12687762 ~ 12724515 (-)
ndufv1 ndufv1,LOC108437925,LOC103023083,LOC107693353,LOC107589403,LOC107101109 coding upstream 321365 12761712 ~ 12770681 (-)
G404421 NA non-coding downstream 159470 12275268 ~ 12275502 (-)
G404282 NA non-coding downstream 309132 12125457 ~ 12125840 (-)
G404243 NA non-coding downstream 434462 12000266 ~ 12000510 (-)
G404241 NA non-coding downstream 437502 11997070 ~ 11997470 (-)
G404235 NA non-coding downstream 464008 11970742 ~ 11970964 (-)
G404667 NA non-coding upstream 74124 12514471 ~ 12515210 (-)
G404681 NA non-coding upstream 134733 12575080 ~ 12577284 (-)
G404682 NA non-coding upstream 136185 12576532 ~ 12578806 (-)
G404687 NA non-coding upstream 148925 12589272 ~ 12591533 (-)
G404692 NA non-coding upstream 161285 12601632 ~ 12635213 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other downstream 178600 12145598 ~ 12256372 (-)
si:ch73-347e22.4 NA other downstream 644793 11777369 ~ 11790179 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 3018719 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 3150479 9227395 ~ 9284493 (-)
G402673 NA other downstream 3273502 9143870 ~ 9161470 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 74969 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 130117 12570464 ~ 12570536 (-)
trnav-cac_23 NA other upstream 131246 12571593 ~ 12571666 (-)
trnav-cac_24 NA other upstream 133252 12573599 ~ 12573671 (-)
trnav-aac_24 NA other upstream 134393 12574740 ~ 12574815 (-)

Expression


Co-expression Network