zbtb22b (zbtb22b,LOC108272665,LOC101073910,LOC103355711,LOC104955937,LOC101155366)


Basic Information

Item Value
gene id zbtb22b
gene name zbtb22b,LOC108272665,LOC101073910,LOC103355711,LOC104955937,LOC101155366
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14598495 ~ 14614761 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928370.2
GTttaggaagtgtgtgtgcactacacACTGGGCTCAGACCGGTTTTGTGATTTgctaataaacacaaaatgtaaactGAAAAACAATTTCTCAGaatgacccacatgCGGCTGTCTGGGATTTTCTTAAAGGGATAACATGCAGCTGCTGGTCTCTGGAGCTAAGCGAGCGTTTTATTCCTGATGTTAGCTTTCCTCATGCCGTGAAGATGGACGCTTTGCTGCGCGAATACACTCATGTTGGTCCTTGAAAAAGCTTTTTCAGGGGAATGCAGTCAGCAACAGAGGAGAACAGTTGTGATGGCGCCTCGGCTGTGCCCACGGGTTCGGTGGTGCAGGTGTGTTTCCCCAACGTGCAGACATCTGTGCTGGACAGCCTTAATCGCCAGCGTGAGGACGGGCAGCTGTGTGACCTCTCCATACATGTGCAGGGACATGTTTTTAAAGCCCATCGCTGCGTGTTAGCTGCCTCCTCACCTTACTTCCATGACCAGGTGCTACTGAAGAACATGTCCACAGTGTCCATCCCAGCTGTTATGGACCCACTGGCGTTTGAGAGGGTCCTAAGCTGTGCCTACACTGGCCAGCTGCAGATGCTGCGTGAAGACATTGTCAACTACCTCACCATTGGGAGTGTGCTCCAGATGTGGCACATCGTGGACAAGTGCACGGAACTActcagagaggacagaggaggttcCTCTGGGCCACAGGGTACAGCTCCATCCTCAGAGAGCACGAGATGCAGCAGTATTGCTAACAGGGACGCCTGTGGAGGAGAAGAACACACGCAGTCTATGGTGCAACCTCTGAACCGTCCCTCACTGATCGAGAGTCAGTCCCCCAGCAGTACTAACTACTTCAGCCCCAAAGACGCTAGTTTTGGTGGAGCAATGGCAAGTACTGGAACAGTGGGAGATGGAGGCATACATTCCACTCCTAACTACTGCATGCCGTCCAGTCGAGAAGATGCTTTCCTAattgatgaggaggaggaagatgatgagCTTGTGTACCCAAGGAAACAGGAACAGGGGAGCGGCAGGAGGAAGAAGTTTACGCCTGCCTCTGACCAAGAAATCGGAGTGAGTGACAGTTTCGGGGTTTCGTCCTACCAGGATATAGAGTCGTCTCCACCGCAGAAGCGCCCCGTGTACAGTCAGCCGAGCATCATGCCTCGCAAGCAGTGGGTGGTGGTAAAAACCGAGCGCTCCAGGGATGATGACTTCATCGTGGTCTCTGGAGAAGAAGGAGGTGAAAATGAAGATGAGCAGGAGTTAGAGATTGccaaggagagagaaagggagaggacGTTTAATATTTCTAACGTTAGGACTCTTTCTGCAGACCTCAGCAGCAGGGAGGAAATTGAAGCACAGGTTGACTACTGCCAATCACCTGAAGACTACCTCAAGTTTGAAAGTGGTTTGATGGACCAAACATCATCACAACACACTTTGGAGAACCCCAGCCAGAGCACCAGTCGAGCAGTTACTGCGTTACTGAGCTCAGTCCAGACAGCCGCTGCCAGAACACAGCTCTTCCCACTGGACATGCAGGGGAACCAGATTCTTCTCTACAACCAAGCTTCTCCTACAGTTGGGCTGCAAGAAGCTTTGCCTGGGGCGTCACTAAAAGGAACTTCGGAGCATGGAACAGTCCACCTGACTGGGCAGGGTGGAATGGACAGCGGCTTAGACGGGTTAGACGGCAGCGGGGCTGGCGCTAAAGTGTTTATGTGCCACTGTGGCAAAAGGTTTACTCACAAGAGCATGCGAGACCGCCACATAAACATGCATCTAGATCTGCGGCCTTTCCACTGTCCGGTTTGCTCCAAGAAGTTCAAGATGAAGCACCATCTAACAGAGCACATGAAGACACACACAGGTTTGAAGCCCTACGACTGCCTTAGCTGTGGGAAAAAGTTCATGTGGCGTGACAGCTTCATGAGGCATCGCTCTCACTGTGAAAGGCACGGTGGCATCAGTGGTACTGCCGAGGCCCAGGGTTCAGAAGGGTCAGTTATTTCCCCTCAAAATCCTCTTCAGCACCAGCCTTCAGGCAACAAAGGTACTCAAGGCAGCGCTGGAGGCAGAAGTGGAATTCCAGTTTTGTCTCCACACCACtccagtagtagcagcagcagtagtagtagtagaagtggTTTGAGCATGGCAGTCCCTGCGTCTCTTTTAGGGATAAATCCCCAGAGTGGAATGTATGGCCATGGCTCTGGTGTTCTGGGGCTAGAGGTAAGCCAGAGTGAATGTGGGGAAGATATAAGTGAGGTTTGTATAGGTGAAAACAGTGTCACTTAAGCATCACTTCAGCATCCTTTCAAAAAGCAAAGTATTGCCACGTGGGACCGTGTGTACAGTCGTCCGGTTGTGATAGTGTCCGTGAGCATGATCCATGTAACAAGATAGGAAAGAAATAATTTATCGATCTTAGAGCATTTATAGTCTGCATTAAAGTAAAATCGTGCACAGTCCACAGAATGTTAGAAAACTTGCTAATTGAATTGATCTTTTGGACAAATTTCAtcactaaaagaaaaaaatatatttcttaatatttttgtagGGCAACACTTCACATTACCTCAAAGAGGGAAATATCACACATGGGCTCTTATTTACACATTTGATGATGCTCTGTGTGTAAGAGCCCACAACTTCAGGCAGTTTGCACTCACAGCGTATAACGAGAGGACGCAtcctttcatttcatcatcTGCGCCGTTACACCCAACTTCAGGCAGTACATTGATCTGAAGCACACCAGGGggtgtattcagagtcggccACTTAACTCCAAACATTacgtcaatatttacacaaggAAAGTTCCTCCTGTTCAGAGATGCTTTACGCACCAGGTTGAGTTGATTTTCTGGGTGTGCCATTTAGATTATGCACATCACCTGCGTGCAGCTCACGCCTCCGGAGCTGCTAGATTGTTCTTGAGTAGACACGttaagagacttttttttttccagtaagcGTCTttaaaacacaagcacttgcctttaagctccccaaaaaatcagggatagaaaatgcagactgaagacggaaaaatgtttttttccccctcgcTTTCAAATTTAAAACCATGTAACAGAAAAGCGtggaacaatttaaaaatagaagataaaaaaagactaatatgatgtatgtgtggcagcctggaaaacaaacccttcacatggtcaacatatatatatatatatatatatacttatatatttctgaaaaccaCAAGTTTTCCTGCACTTAAATATGATTCTCTTTCGCACATATTTCATCCAGAAGTAACATTTAAAGTCTGGCTAACcccaaaaaaggagaaaatttcATCTTCAAAATTTCATTCAAATTCCATGCCACTGAAAGACACCTTCCTCTAAATTTATAACTTTCCACCGAAAATTGGTACCCTTccaccttttaaaaaaaaaaagaacagaaaaaagaaaaaaaagctatttttctCTACATTAAGTTGAAACTTACATAAGTGCATGatattcaatattatttattttacatcgAATAGAATAGAAACTATACTATTGATTTATGATTTAACATATTATttcaaataagaaaacaaatgaaaatggcatggaCAAAAATATTGGTACCTTGAACTTAATATGTTGTAGCACAGCCTTTGGAGGCAGTGACAGCAGCTTTCTGTAGTTCGGAATAAGGTTCCTGCATTTCTCTGCTGCTAGTTTGACCCGCTCTTCTTCCGTCTCTCCCCTGCGAGTTTCAGATCTTTCCACAAATGTTCAGTGCTCTGGGTCGTGATCCTGCTgtccagtctggccttctgtGAGTTGCTTTGAAACAACTTCTTAAACTTCTTTATAGTATTGGCAGCTGCGTTCACAGGAAGAAGCTCAAGCTCTTTAGAAATGATTTTGTAACCTTTACGTTGAACATGCTTGGCTATGACCTTCTTCCCTCCTCTCCTCAGACACTGTCTGCTTTTCCTTCTGTTTGTGTGCTCAGTATGATCTCCACAGTGGAAGACGGCTAGACGAGTAACTACATCCGGAACTACCTTTAACCTGGCTGCATGAGTGATTATAAGATTGGAAGCACCTGTAATACTAATTAATGGTCTGCTCAAATTATCACTACAATGCAACTTTTTTCTTACAACTTTCAAAGGGTACCAATAATTTTGGTCACGTCTGTAATCTACTGATTGGAAAAACAACGTAACTGACAAATTGCAGAGTTATAAGTTTACAATATGAAATGCTAATTATCActttatcagcatcatccacgtCAGTCTCTGTCTCGTCACTTGAAGTGAGATTTACTCGAGGCATTTGATCTATCAGAGCCTCATCATTTCTTCACTCGACTGATCTCTCTGTGCTCTTACATCGAGGAAATAACCGCTGATTCGTTCACTCAGCTCTGATCTGTTAATGTCTTAATGTCTTTATTAGGCCGTTTAAACGTTTTAAAGCTGTACAGCgggctcttctctgttttgatgatgatgtgatggcacAGGAGCATTTTAACATCCAACTTTTTAACTTCTGGTATCTGAACATGAACTGGAGCAAGTCTGTTTCACTATGGTGCGTAACTTTGCAAAAAACCTGACCAAAATTGTAAGAAAATCACTCTTCACTAGCAAGGCTTTAGACGTCTCTCGGCagactgtttgtttttatctgtgtgtttgttaaactgatgtgatctttgcaggaagatgccaaggcaaggttagaaaataacctaaacaaaaacatgtccatcattttaaaatcagatttttgtctttttggctGGTTTTATGCATTCAGTAGCCGTGACTTCCAGCGAGTTGCTGCATGAGTAGTCCTAGGTGTAATCATCACAGGGCTtccacattcattcattattcagcagcttataaaatagcacttgatccagcacatgctgttgtgtgatttttaatttttaatattgtgcTTGGACAGTTACTCGTgcacacaacttaatgaagGCGCAAGACGCTAAAccgaggtcatgaaatcataatgtgagTGTGGGATGTAAGCTATTTTATCTCACTTTTAAATTGCTGTTTTGAgttgttaaattaataaataatgctaatatttttgtttgtctgtagtCGGTCCAGCATACAGCCCTCCAGCCGTCATGACacagtatatttattaaacatgcttcatttattaaacatcatttatttattaaacacaca

Function

symbol description
zbtb22b Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB22 (zinc finger and BTB domain containing 22).

NR:

description
PREDICTED: zinc finger and BTB domain-containing protein 22-like

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K10502 ZBTB22, BING1; zinc finger and BTB domain-containing protein 22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928370.2 True 5243 mRNA 0.44 5 14598495 14614761

Neighbor

gene id symbol gene type direction distance location
epb41a epb41,LOC107712606 coding downstream 12253 14552044 ~ 14586242 (-)
trnat-ugu_15 NA coding downstream 52317 14546106 ~ 14546178 (-)
trnat-ugu_14 NA coding downstream 55206 14543217 ~ 14543289 (-)
tmem222b tmem222,tmem222b,LOC108273317,LOC103043641,LOC105903612,LOC107550652,LOC107754919 coding downstream 107232 14481937 ~ 14491263 (-)
kdf1b LOC108273298 coding downstream 127677 14460392 ~ 14470818 (-)
ctdp1 ctdp1,LOC107552301,LOC107550068 coding upstream 7920 14622681 ~ 14637333 (-)
daxx daxx coding upstream 37583 14652344 ~ 14670040 (-)
gnb3b gnb3b,LOC108433753,LOC107666347,LOC107665150,LOC107753988,LOC107727720,LOC107563025 coding upstream 245493 14860254 ~ 14867598 (-)
si:ch211-264f5.6 NA coding upstream 282849 14897610 ~ 14917917 (-)
cica LOC108272903,LOC108433746 coding upstream 316382 14931143 ~ 14964811 (-)
G405707 NA non-coding downstream 212845 14378892 ~ 14385650 (-)
G405681 NA non-coding downstream 269295 14256524 ~ 14329200 (-)
G405701 NA non-coding downstream 283661 14313739 ~ 14314834 (-)
LOC117596429 NA non-coding downstream 406740 14183486 ~ 14191755 (-)
G405575 NA non-coding downstream 521345 14076442 ~ 14077150 (-)
G405900 NA non-coding upstream 3888 14618649 ~ 14686310 (-)
G405901 NA non-coding upstream 4577 14619338 ~ 14654751 (-)
G405906 NA non-coding upstream 30092 14644853 ~ 14966111 (-)
G405909 NA non-coding upstream 73262 14688023 ~ 14720906 (-)
G405917 NA non-coding upstream 85507 14700268 ~ 14704312 (-)
tpbga LOC108272337 other downstream 119418 14475476 ~ 14479077 (-)
G405588 NA other downstream 478837 14114619 ~ 14119658 (-)
npy npy other downstream 514649 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 836938 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 1039864 13556156 ~ 13558631 (-)
G405961 NA other upstream 352715 14967476 ~ 15013988 (-)

Expression


Co-expression Network